Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005823

Physical Location & Seq

Genomic Coordinates Forward (+)

26390915 .. 26392618

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1187400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCTTGAATAGAATGCAGAATGCAAAAGGTGCGGCACGCAAGTTACTAGCAGAAAGTTATACAAGCAGGGATCAGGTTTCTATCATTCCTTTCCAGGGAGATTCAGCAGAAGTTCTTCTGCCTCCTTCTAGATCAATTTCAATGGCACGAAACCGTCTTGAGAGACTTCCATGCGGCGGAGGTTCTCCCCTTGCTCATGGTCTGACCAGGGCTGTTAGGGTTGGAATAAATGCAGAGATGAGTGGTGATGTTGGACGTATAATGATTGTTGCAATAACGGATGGTAGAGCCAATATCTCTCTAAAGAGATCCACTGACCCTGAAGCTGCTGCTGCTACTGACGTTCCAAAACCTTCGTCACAGGAGTTGAAGGATGAGATTCTCGAGGTTGCTGGTAAAATCTACAAAGCAGGGATGTGTCTCCTCGTCATTGACACCGAAAATAAGTTTGTTTCAACTGGTTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0010007 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase VWA_2

Protein Analysis

158

Amino Acids

16.71

Weight (kDa)

9.03

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VWA_2	PF13519	4 - 96	8.3e-08	von Willebrand factor type A domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08520
fragaria_vesca	FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280
malus_domestica	MD03G1170000.v1.1 MD11G1187400.v1.1
prunus_persica	Prupe.4G257100_v2.0.a1 Prupe.4G257100_v2.0.a1
pyrus_communis	pycom11g16410 pycom11g16420
rosa_chinensis	RchiOBHm_Chr5g0051161
rosa_laevigata	RLG00000034758
rosa_multiflora	Rmu_sc0000446.1_g000012
rosa_roxburghii	Rroxscaffold_1G00029290
rosa_samantha	Rh5AG338500 Rh5BG348400 Rh5CG375500 Rh5DG361300
rosa_wichuraiana	Rw0G023660 Rw5G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	35, 177, 180
AclWI	GGATC	2 cut(s)	81, 306
AcuI	CTGAAG	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	98, 179
AgsI	TTSAA	4 cut(s)	10, 144, 373, 459
AjnI	CCWGG	2 cut(s)	96, 209
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	160, 428
AlwI	GGATC	2 cut(s)	81, 306
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	329, 332, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	316, 319, 322
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	98, 211
BcoDI	GTCTC	2 cut(s)	160, 428
BfaI	CTAG	2 cut(s)	50, 132
BisI	GCNGC	5 cut(s)	36, 178, 330, 333, 336
BlsI	GCNGC	5 cut(s)	37, 179, 331, 334, 337
Bme1390I	CCNGG	2 cut(s)	98, 211
BmeT110I	CYCGRG	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	98, 211
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	97, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 179
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	2 cut(s)	98, 211
BseDI	CCNNGG	2 cut(s)	97, 210
BseGI	GGATG	3 cut(s)	289, 382, 423
BseLI	CCNNNNNNNGG	2 cut(s)	98, 179
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	316, 319, 322
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	98, 179
BsmAI	GTCTC	2 cut(s)	160, 428
BsmI	GAATGC	2 cut(s)	21, 28
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	73, 134, 311
BspACI	CCGC	3 cut(s)	35, 177, 180
BspANI	GGCC	1 cut(s)	5
BspPI	GGATC	2 cut(s)	81, 306
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	2 cut(s)	97, 210
BssMI	GATC	3 cut(s)	73, 134, 311
Bst2UI	CCWGG	2 cut(s)	98, 211
Bst4CI	ACNGT	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	471
BstF5I	GGATG	3 cut(s)	289, 382, 423
BstKTI	GATC	3 cut(s)	76, 137, 314
BstMAI	GTCTC	2 cut(s)	160, 428
BstMBI	GATC	3 cut(s)	73, 134, 311
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 335
BstNI	CCWGG	2 cut(s)	98, 211
BstSCI	CCNGG	2 cut(s)	96, 209
BstV1I	GCAGC	3 cut(s)	316, 319, 322
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	289, 382, 423
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	40
CviAII	CATG	2 cut(s)	174, 200
CviJI	RGCY	4 cut(s)	5, 215, 293, 329
CviKI_1	RGCY	4 cut(s)	5, 215, 293, 329
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	3 cut(s)	75, 136, 313
DpnII	GATC	3 cut(s)	73, 134, 311
EciI	GGCGGA	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	96, 209
FaeI	CATG	2 cut(s)	177, 203
FaiI	YATR	4 cut(s)	63, 175, 201, 263
FatI	CATG	2 cut(s)	173, 199
Fnu4HI	GCNGC	5 cut(s)	36, 178, 330, 333, 336
FokI	GGATG	3 cut(s)	296, 389, 430
Fsp4HI	GCNGC	5 cut(s)	36, 178, 330, 333, 336
FspBI	CTAG	2 cut(s)	50, 132
GluI	GCNGC	5 cut(s)	36, 178, 330, 333, 336
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	177, 203
HinfI	GANTC	2 cut(s)	104, 382
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	132, 161, 386
HpyAV	CCTTC	3 cut(s)	138, 366, 367
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	259, 345
HpyCH4V	TGCA	4 cut(s)	19, 26, 236, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 335
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	2 cut(s)	259, 345
Hsp92II	CATG	2 cut(s)	177, 203
Kzo9I	GATC	3 cut(s)	73, 134, 311
Lsp1109I	GCAGC	3 cut(s)	316, 319, 322
MaeI	CTAG	2 cut(s)	50, 132
MaeII	ACGT	2 cut(s)	259, 345
MaeIII	GTNAC	2 cut(s)	45, 360
MalI	GATC	3 cut(s)	75, 136, 313
MboI	GATC	3 cut(s)	73, 134, 311
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	205, 235
MnlI	CCTC	4 cut(s)	135, 176, 382, 437
MroXI	GAANNNNTTC	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	98, 211
Mva1269I	GAATGC	2 cut(s)	21, 28
MvaI	CCWGG	2 cut(s)	98, 211
MwoI	GCNNNNNNNGC	2 cut(s)	32, 335
NdeII	GATC	3 cut(s)	73, 134, 311
NlaIII	CATG	2 cut(s)	177, 203
NmuCI	GTSAC	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	386
PctI	GAATGC	2 cut(s)	21, 28
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	104, 382
PkrI	GCNGC	5 cut(s)	37, 179, 331, 334, 337
Psp6I	CCWGG	2 cut(s)	96, 209
PspGI	CCWGG	2 cut(s)	96, 209
PsuI	RGATCY	1 cut(s)	311
SatI	GCNGC	5 cut(s)	36, 178, 330, 333, 336
Sau3AI	GATC	3 cut(s)	73, 134, 311
ScrFI	CCNGG	2 cut(s)	98, 211
SetI	ASST	8 cut(s)	34, 81, 187, 262, 331, 348, 358, 393
Sfr274I	CTCGAG	1 cut(s)	386
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	161, 386
SmoI	CTYRAG	2 cut(s)	161, 386
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	3 cut(s)	35, 177, 180
SspMI	CTAG	2 cut(s)	50, 132
StyD4I	CCNGG	2 cut(s)	96, 209
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	262, 348
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	138
TauI	GCSGC	2 cut(s)	38, 180
TfiI	GAWTC	2 cut(s)	104, 382
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	3 cut(s)	329, 332, 335
Tsp45I	GTSAC	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	50, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.