Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005823

Physical Location & Seq

Genomic Coordinates Forward (+)

18002383 .. 18003621

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGTTTGATTCTGCTGGTAATATCAAGACTCAGATTTTCCGGTCTCCTTTTGTTCAGCCACTTGGAGTCACAGAGGACAGACTTATTGGTTCTGTTGAGGTTGAAGAGTCTGTGAAAACAGGAACCACTGTTTTCCAGCCAGGCAAAGCTCATCGAGGTGTATTATACGTTGATCAAATTAATCTTTTGGATGAGGGTATGAGTAATTTGCTTCTTAACGTACTAACTGAAGGAGTTAATATCGTGGAAAGAGAGGGAATCGGCTTTAGACACCCATGCAAGCCTCTCTTGATTGCTACTTATAACCCGGAAGAGGGAGCTGTTCGTGAACACTTACTAGATCGCATTGCAATTAATTTGAGATTTGAAATGGGTTTCGATGATCGTGTTGCAGCTGTGGCGATTGCAACACAATTTCAGGAGCACAGTCCTGAAGTCTTTATAATGGTTGAAGAAGAAACGGAATCTGTGAAAACTCAGATCATTTTAGCAAGAGAGTATCTAAAGGATGTCACTATAAGCAGAGAACAATTAAAGAACCTGGTTTTGGAAGGTCTTCGAGGTGGTTGCCAGGTATTTTCTGTGGCCTCATTAAGATCAGAAAGATTTTGCCTGAGTTTTTCTCTCCTCTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0010007 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase VWA_2

Protein Analysis

214

Amino Acids

23.81

Weight (kDa)

4.96

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08520
fragaria_vesca	FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280 FvH4_3g28280
malus_domestica	MD03G1170000.v1.1 MD11G1187400.v1.1
prunus_persica	Prupe.4G257100_v2.0.a1 Prupe.4G257100_v2.0.a1
pyrus_communis	pycom11g16410 pycom11g16420
rosa_chinensis	RchiOBHm_Chr5g0051161
rosa_laevigata	RLG00000034758
rosa_multiflora	Rmu_sc0000446.1_g000012
rosa_roxburghii	Rroxscaffold_1G00029290
rosa_samantha	Rh5AG338500 Rh5BG348400 Rh5CG375500 Rh5DG361300
rosa_wichuraiana	Rw0G023660 Rw5G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	306, 446
AcuI	CTGAAG	2 cut(s)	252, 456
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	316, 317, 550
AgsI	TTSAA	3 cut(s)	107, 371, 455
AjnI	CCWGG	3 cut(s)	142, 543, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	3 cut(s)	152, 323, 398
AluI	AGCT	3 cut(s)	152, 323, 398
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	395
AseI	ATTAAT	2 cut(s)	183, 357
Asp700I	GAANNNNTTC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	407
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BciT130I	CCWGG	3 cut(s)	144, 545, 575
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	4 cut(s)	144, 311, 545, 575
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	4 cut(s)	144, 311, 545, 575
BpiI	GAAGAC	1 cut(s)	551
BplI	GAGNNNNNCTC	2 cut(s)	610, 642
BpuMI	CCSGG	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 317, 550
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	144, 545, 575
BseGI	GGATG	2 cut(s)	199, 517
BseLI	CCNNNNNNNGG	3 cut(s)	316, 317, 550
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	47, 494, 608
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	43, 311
BslI	CCNNNNNNNGG	3 cut(s)	316, 317, 550
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	590
Bso31I	GGTCTC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	5 cut(s)	175, 343, 385, 483, 599
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	3 cut(s)	46, 493, 609
BspLI	GGNNCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	348
BssMI	GATC	5 cut(s)	175, 343, 385, 483, 599
Bst2UI	CCWGG	3 cut(s)	144, 545, 575
Bst4CI	ACNGT	2 cut(s)	133, 431
Bst6I	CTCTTC	2 cut(s)	102, 309
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	4 cut(s)	33, 480, 617, 634
BstF5I	GGATG	2 cut(s)	199, 517
BstKTI	GATC	5 cut(s)	178, 346, 388, 486, 602
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	5 cut(s)	175, 343, 385, 483, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	3 cut(s)	144, 545, 575
BstSCI	CCNGG	4 cut(s)	142, 309, 543, 573
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	199, 517
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	8 cut(s)	61, 142, 152, 267, 286, 323, 398, 590
CviKI_1	RGCY	8 cut(s)	61, 142, 152, 267, 286, 323, 398, 590
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	4 cut(s)	33, 480, 617, 634
DpnI	GATC	5 cut(s)	177, 345, 387, 485, 601
DpnII	GATC	5 cut(s)	175, 343, 385, 483, 599
Eam1104I	CTCTTC	2 cut(s)	102, 309
EarI	CTCTTC	2 cut(s)	102, 309
Eco31I	GGTCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	252, 456
EcoRII	CCWGG	3 cut(s)	142, 543, 573
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	169, 203, 280, 306, 446, 521
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	206, 524
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	590
HapII	CCGG	2 cut(s)	43, 311
Hin1II	CATG	1 cut(s)	282
HinfI	GANTC	6 cut(s)	11, 31, 69, 110, 261, 467
HpaII	CCGG	2 cut(s)	43, 311
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	36, 483, 604
Hpy188III	TCNNGA	5 cut(s)	28, 292, 329, 422, 434
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	227, 548
HpyCH4III	ACNGT	2 cut(s)	133, 431
HpyCH4IV	ACGT	2 cut(s)	171, 222
HpyCH4V	TGCA	4 cut(s)	282, 353, 395, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	33, 480, 617, 634
HpySE526I	ACGT	2 cut(s)	171, 222
Hsp92II	CATG	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	175, 343, 385, 483, 599
LmnI	GCTCC	2 cut(s)	320, 424
Lsp1109I	GCAGC	1 cut(s)	407
MabI	ACCWGGT	1 cut(s)	543
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	171, 222
MaeIII	GTNAC	2 cut(s)	70, 514
MalI	GATC	5 cut(s)	177, 345, 387, 485, 601
MboI	GATC	5 cut(s)	175, 343, 385, 483, 599
MboII	GAAGA	5 cut(s)	119, 326, 467, 470, 551
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	6 cut(s)	180, 208, 354, 358, 416, 533
MlyI	GAGTC	3 cut(s)	25, 78, 119
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	7 cut(s)	183, 219, 240, 357, 536, 596, 640
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	43, 311
MspR9I	CCNGG	4 cut(s)	144, 311, 545, 575
MvaI	CCWGG	3 cut(s)	144, 545, 575
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	5 cut(s)	175, 343, 385, 483, 599
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	70, 514
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	11, 261, 467
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	25, 77, 118
PpsI	GAGTC	3 cut(s)	25, 77, 118
PshBI	ATTAAT	2 cut(s)	183, 357
PsiI	TTATAA	2 cut(s)	306, 446
Psp6I	CCWGG	3 cut(s)	142, 543, 573
PspGI	CCWGG	3 cut(s)	142, 543, 573
PspN4I	GGNNCC	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	7 cut(s)	183, 219, 240, 357, 536, 596, 640
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	5 cut(s)	175, 343, 385, 483, 599
SchI	GAGTC	3 cut(s)	25, 78, 119
ScrFI	CCNGG	4 cut(s)	144, 311, 545, 575
SduI	GDGCHC	1 cut(s)	429
SexAI	ACCWGGT	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	6 cut(s)	180, 208, 354, 358, 416, 533
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	4 cut(s)	142, 309, 543, 573
TaaI	ACNGT	2 cut(s)	133, 431
TaiI	ACGT	2 cut(s)	174, 225
TaqI	TCGA	3 cut(s)	157, 381, 562
TasI	AATT	6 cut(s)	180, 208, 354, 358, 416, 533
TfiI	GAWTC	3 cut(s)	11, 261, 467
Tru1I	TTAA	7 cut(s)	183, 219, 240, 357, 536, 596, 640
Tru9I	TTAA	7 cut(s)	183, 219, 240, 357, 536, 596, 640
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	70, 514
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	70, 514
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	136
VspI	ATTAAT	2 cut(s)	183, 357
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.