Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014306

Physical Location & Seq

Genomic Coordinates Forward (+)

34196536 .. 34204904

Gene Structure 8369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGCTCGACCCCATGGACCTGCTCCGATCCAATCTCTCCCGGGTACGGATCCCGGAACCCACCAACCGCATCTACAAGCAAGAATGCTGCATCTCTTTCGACACTCCGAGATCAGAAGGTGGTTTGTTTGTGGATATGAACACATTTCTTGCTTTTGGGAAGGATTGTGTGGGCTGGAACTACGAAAAAACTGGAAATCCAGTTTATTTGCATATAAGGCAAACTAAAGTGTTGGTTCCTGAAGATAGGCCTTTGAAGAAACCAACACTCATGGCTATAGGTGTCGATGGGGGATTTGATAACAATGAACCTGAATATGAAGAAACGCACAGTATAGTCCTATTGCCTGATTATGTAACTCTTCCATTCCCATCTGTCGAATTACCAGAGAAGGTAAGATTGGCAGTTGATGCTATTTTATTGGCTGAGGGTGCTGAGAGGAAAGAACAACTTGCAGCATGGACAGCTGAGAAGAAGCAAGTTAGTGCTTATGCAACGAATTTGCAGCAGATTGACAATGGTATTATTATTCCTTCATCTGGCTGGAAATGTTGCAAGTGTGATAAAAGGGAAAATCTTTGGTTAAATCTAACTGATGGAATGATCCTCTGTGGGAGAAAAAATTGGGATGGAACTGGTGGCAACAACCATGCCATTGAACACTATAAGGAGACGGGCTATCCTCTTGCTGTAAAGCTGGGGACAATTACAGCTGATCTGGAAGGAGCAGATGTTTTTTCATACCCAGAGGATGATAGTGTATTAGACCCGCTTTTAGCGCAACATCTGGCATTTTTTGGCATTGATTTCTCATCGTTACAGAAGACAGAAATGACAACTGCCGAAAGAGAGCTTGACCAGAATACCAATTTTGACTGGAACCGGATTCAAGAAAGTGGACAGGAAGTCGAACCGATATTTGGACCCGGTTACACTGGACTTGTGAATCTTGGAAACAGCTGCTATATGGCAGCGACTATGCAAGTCGTGTTTTCAACGCACTCTTTCTATTCCGGATACTTCAAGAATCAAAGTTTGAAAATGGCTTTTGAGAAAGCACCAGCTGACCCCACTGTAGACCTGAACATGCAGTTAACAAAGTTGGCACATGGTTTGCTGTCTGGTAAATACTCTGTTCCTGTAACCGAGGAAAAAGATCATACAAATGCTGCTGCCCCTACAACAAAATCAAAACAGGAAGGCATACCCCCTCGTATGTTTAAAGCAGTTATAGCTGCCAGCCATCCGGAATTTTCCTCCATGAGACAACAGGATGCCTTGGAGTTCTTCCTTCATTTTCTTGACCAAGTTGAACGAGTTCATTCTGGAAGACCTGAGGTGGATCCTGCTAGGAGCTTTAAGTTTGGCATTGAAGATCGTATTATGTGTTCATCTGGGAAAGTTGCTTACCATAGAAGGCTCGACTACATTCTCTCATTAAACATTCCACTTCATGCAGCCACTAATAAAGAAGAACTTGAAGCATTTCAGAAATTGAAAGCTGAAAAGATTACGGAAGGCAAGGAAGTATCCAGTGATGAGATTGTACGTCCAAGGGTTCCTCTAGAAGCATGCCTTGCAAACTTTTCATCTCCAGAAGAAATACAGGATTTTTACAGCACTGCCTTGAAGGCCAAGACAACTGCTGTGAAGAGTACAGGTCTAACTTCATTCCCCGATTATCTGGTGTTGCACATGCGAAAGTTTGTAATGGAAGTGGGCTGGGTGCCAAAAAAACTTGATGTGTATATAGATGTTCCTGATATCATCGATATCAGTCACATGCGGAGCAAGGGACTCCAACCTGGTGAAGAGTTGTTGCCGGAGGGTGGAGAAGAGGAGGAACCGAATAAGCCTGTCGCCAACGAGAGTATTGTTTCCCAGCTTGTTTCAATGGGTTTCAACCATTTACACTGTCAGAAAGCTGCCATTAATACGTCGAATGCCGGAGTGGAAGAGGCAATGAATTGGCTACTTTCTCACATGGATGATGCAGATATAGATACTCCTATTTCTCAAGGAGGACAGTGTGTGGTTGACCAATCAAAAGTGGATATGTTGATTTCATTTGGTTTTCAAGAAGACATTGCTCGGAAGGCACTGAAAGCATCGGGTGGTGACATCGAGAAAGCCACAGATTGGATATTCAACAATCCTGATGCTTCTGTTTCATCGGACATGGATGCGACGACATCTGATGGTGCACCTACTGCGATTGATGCTGGACTGCCTGATGGAGCAGGGAGATATAGACTCATGGGAATTGTAAGCCACATCGGAACATCTACTCAATGTGGTCATTACGTTGCGCACATCTTAAAAGATGGCAGATGGGTTATTTTCAATGACAGCAAAGTTGGAGCTTCCGTTAATCCTCCCAAGGACATGGGATACCTTTACTTCTTTGAGAGACTTAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

808

Amino Acids

89.61

Weight (kDa)

5.07

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP_var	PF17807	15 - 76	7.3e-22	Variant UBP zinc finger
zf-UBP	PF02148	184 - 257	1.1e-17	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	312 - 802	1.3e-45	Ubiquitin carboxyl-terminal hydrolase
UBA_7	PF22562	622 - 668	2e-20	UBA-like domain
UBA	PF00627	622 - 658	1.8e-07	UBA/TS-N domain
UBA	PF00627	679 - 715	4.7e-09	UBA/TS-N domain
UBA_7	PF22562	680 - 722	8.8e-11	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20630
fragaria_vesca	FvH4_3g21160 FvH4_3g21160
malus_domestica	MD03G1217200.v1.1 MD11G1234900.v1.1
prunus_persica	Prupe.4G192200_v2.0.a1
pyrus_communis	pycom11g20650
rosa_chinensis	RchiOBHm_Chr5g0036241
rosa_laevigata	RLG00000033681
rosa_multiflora	Rmu_sc0000247.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044540
rosa_rugosa	Rorug05G0154300
rosa_samantha	Rh5AG248000 Rh5BG248600 Rh5CG279900 Rh5DG256900
rosa_wichuraiana	Rw5G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2310
Acc36I	ACCTGC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	1726
AccB7I	CCANNNNNTGG	1 cut(s)	2139
AccI	GTMKAC	1 cut(s)	1077
AccIII	TCCGGA	2 cut(s)	1013, 1246
AciI	CCGC	3 cut(s)	67, 770, 1786
AclWI	GGATC	6 cut(s)	21, 43, 56, 598, 1337, 1350
AcsI	RAATTY	2 cut(s)	499, 1250
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	45, 1548, 1657
AfiI	CCNNNNNNNGG	5 cut(s)	45, 539, 920, 1829, 2139
AhdI	GACNNNNNGTC	1 cut(s)	905
AjnI	CCWGG	1 cut(s)	1804
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 903, 935
Alw21I	GWGCWC	1 cut(s)	2206
Alw26I	GTCTC	3 cut(s)	665, 1258, 2404
Alw44I	GTGCAC	1 cut(s)	2202
AlwI	GGATC	6 cut(s)	21, 43, 56, 598, 1337, 1350
Ama87I	CYCGRG	1 cut(s)	39
Aor13HI	TCCGGA	2 cut(s)	1013, 1246
AoxI	GGCC	2 cut(s)	248, 1632
ApaLI	GTGCAC	1 cut(s)	2202
ApoI	RAATTY	2 cut(s)	499, 1250
AseI	ATTAAT	1 cut(s)	1932
Asp700I	GAANNNNTTC	2 cut(s)	1317, 1485
AspLEI	GCGC	2 cut(s)	781, 2311
AspS9I	GGNCC	2 cut(s)	16, 923
AsuC2I	CCSGG	4 cut(s)	40, 41, 53, 927
AsuHPI	GGTGA	2 cut(s)	1820, 2129
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	16, 923
AxyI	CCTNAGG	1 cut(s)	1335
BaeGI	GKGCMC	1 cut(s)	2206
BamHI	GGATCC	2 cut(s)	48, 1342
BanI	GGYRCC	1 cut(s)	1726
BbsI	GAAGAC	3 cut(s)	830, 1336, 2088
Bbv12I	GWGCWC	1 cut(s)	2206
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	9 cut(s)	281, 379, 590, 623, 1251, 2192, 2228, 2318, 2325
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	1806
BciVI	GTATCC	3 cut(s)	1010, 1540, 2384
BcnI	CCSGG	4 cut(s)	40, 41, 53, 927
BcoDI	GTCTC	3 cut(s)	665, 1258, 2404
BfaI	CTAG	2 cut(s)	1350, 1565
BfmI	CTRYAG	2 cut(s)	276, 1074
BfuAI	ACCTGC	1 cut(s)	27
BfuI	GTATCC	3 cut(s)	1010, 1540, 2384
BglI	GCCNNNNNGGC	1 cut(s)	1631
Bme1390I	CCNGG	5 cut(s)	40, 41, 53, 927, 1806
Bme18I	GGWCC	2 cut(s)	16, 923
BmeRI	GACNNNNNGTC	1 cut(s)	905
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	16, 923
BmiI	GGNNCC	9 cut(s)	50, 57, 237, 881, 925, 1344, 1560, 1728, 1845
BmrFI	CCNGG	5 cut(s)	40, 41, 53, 927, 1806
BmsI	GCATC	9 cut(s)	78, 99, 400, 1264, 1981, 2117, 2149, 2173, 2209
BpiI	GAAGAC	3 cut(s)	830, 1336, 2088
BpmI	CTGGAG	1 cut(s)	1578
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	2001
BpuMI	CCSGG	4 cut(s)	40, 41, 53, 927
Bsa29I	ATCGAT	1 cut(s)	1770
BsaJI	CCNNGG	6 cut(s)	12, 39, 1146, 1278, 1553, 2379
BsaWI	WCCGGW	3 cut(s)	882, 1013, 1246
BsaXI	ACNNNNNCTCC	4 cut(s)	717, 747, 2352, 2382
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 539, 920, 1829, 2139
Bse1I	ACTGG	6 cut(s)	196, 200, 640, 881, 940, 1533
Bse21I	CCTNAGG	1 cut(s)	1335
Bse3DI	GCAATG	2 cut(s)	1968, 2085
BseAI	TCCGGA	2 cut(s)	1013, 1246
BseBI	CCWGG	1 cut(s)	1806
BseCI	ATCGAT	1 cut(s)	1770
BseDI	CCNNGG	6 cut(s)	12, 39, 1146, 1278, 1553, 2379
BseGI	GGATG	6 cut(s)	634, 757, 1243, 1279, 1993, 2188
BseLI	CCNNNNNNNGG	5 cut(s)	45, 539, 920, 1829, 2139
BseMI	GCAATG	2 cut(s)	1968, 2085
BseMII	CTCAG	4 cut(s)	417, 426, 459, 1326
BseNI	ACTGG	6 cut(s)	196, 200, 640, 881, 940, 1533
BseRI	GAGGAG	1 cut(s)	1853
BseSI	GKGCMC	1 cut(s)	2206
BseYI	CCCAGC	3 cut(s)	697, 1722, 1881
BshFI	GGCC	2 cut(s)	250, 1634
BshNI	GGYRCC	1 cut(s)	1726
BshVI	ATCGAT	1 cut(s)	1770
BsiHKAI	GWGCWC	1 cut(s)	2206
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	8 cut(s)	40, 53, 883, 927, 1014, 1247, 1823, 1947
BslFI	GGGAC	2 cut(s)	715, 1809
BslI	CCNNNNNNNGG	5 cut(s)	45, 539, 920, 1829, 2139
BsmAI	GTCTC	3 cut(s)	665, 1258, 2404
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	2 cut(s)	715, 1809
BsmI	GAATGC	2 cut(s)	89, 1948
BsnI	GGCC	2 cut(s)	250, 1634
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	2206
Bsp13I	TCCGGA	2 cut(s)	1013, 1246
Bsp143I	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	3 cut(s)	67, 770, 1786
BspANI	GGCC	2 cut(s)	250, 1634
BspCNI	CTCAG	4 cut(s)	418, 427, 460, 1327
BspDI	ATCGAT	1 cut(s)	1770
BspEI	TCCGGA	2 cut(s)	1013, 1246
BspLI	GGNNCC	9 cut(s)	50, 57, 237, 881, 925, 1344, 1560, 1728, 1845
BspMI	ACCTGC	1 cut(s)	27
BspPI	GGATC	6 cut(s)	21, 43, 56, 598, 1337, 1350
BspT107I	GGYRCC	1 cut(s)	1726
BsrDI	GCAATG	2 cut(s)	1968, 2085
BsrI	ACTGG	6 cut(s)	196, 200, 640, 881, 940, 1533
BssECI	CCNNGG	6 cut(s)	12, 39, 1146, 1278, 1553, 2379
BssMI	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
BssT1I	CCWWGG	4 cut(s)	12, 1278, 1553, 2379
Bst2UI	CCWGG	1 cut(s)	1806
Bst4CI	ACNGT	4 cut(s)	332, 1075, 1916, 2028
Bst6I	CTCTTC	5 cut(s)	366, 1646, 1806, 1830, 1950
BstAPI	GCANNNNNTGC	3 cut(s)	410, 1577, 2210
BstC8I	GCNNGC	2 cut(s)	1240, 1573
BstDEI	CTNAG	4 cut(s)	426, 435, 468, 1335
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	6 cut(s)	634, 757, 1243, 1279, 1993, 2188
BstHHI	GCGC	2 cut(s)	781, 2311
BstKTI	GATC	8 cut(s)	29, 51, 113, 606, 718, 1159, 1345, 1378
BstMAI	GTCTC	3 cut(s)	665, 1258, 2404
BstMBI	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
BstNI	CCWGG	1 cut(s)	1806
BstNSI	RCATGY	4 cut(s)	1090, 1575, 1699, 1786
BstSCI	CCNGG	5 cut(s)	38, 39, 51, 925, 1804
BstSFI	CTRYAG	2 cut(s)	276, 1074
BstSLI	GKGCMC	1 cut(s)	2206
BstV2I	GAAGAC	3 cut(s)	830, 1336, 2088
BstX2I	RGATCY	2 cut(s)	48, 1342
BstXI	CCANNNNNNTGG	1 cut(s)	2386
BstYI	RGATCY	2 cut(s)	48, 1342
Bsu15I	ATCGAT	1 cut(s)	1770
Bsu36I	CCTNAGG	1 cut(s)	1335
BsuI	GTATCC	3 cut(s)	1010, 1540, 2384
BsuRI	GGCC	2 cut(s)	250, 1634
BsuTUI	ATCGAT	1 cut(s)	1770
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	6 cut(s)	634, 757, 1243, 1279, 1993, 2188
BtsI	GCAGTG	1 cut(s)	1620
BtsIMutI	CAGTG	7 cut(s)	933, 1071, 1540, 1620, 1912, 2033, 2099
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	1240, 1573
CfoI	GCGC	2 cut(s)	781, 2311
Cfr13I	GGNCC	2 cut(s)	16, 923
Cfr9I	CCCGGG	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	1770
CsiI	ACCWGGT	1 cut(s)	1804
Csp6I	GTAC	3 cut(s)	44, 1547, 1656
CviQI	GTAC	3 cut(s)	44, 1547, 1656
DdeI	CTNAG	4 cut(s)	426, 435, 468, 1335
DpnI	GATC	8 cut(s)	28, 50, 112, 605, 717, 1158, 1344, 1377
DpnII	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
DraI	TTTAAA	1 cut(s)	1222
DriI	GACNNNNNGTC	1 cut(s)	905
Eam1104I	CTCTTC	5 cut(s)	366, 1646, 1806, 1830, 1950
Eam1105I	GACNNNNNGTC	1 cut(s)	905
EarI	CTCTTC	5 cut(s)	366, 1646, 1806, 1830, 1950
Eco130I	CCWWGG	4 cut(s)	12, 1278, 1553, 2379
Eco147I	AGGCCT	1 cut(s)	250
Eco32I	GATATC	2 cut(s)	1765, 1774
Eco47I	GGWCC	2 cut(s)	16, 923
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	1335
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	1804
EcoRV	GATATC	2 cut(s)	1765, 1774
EcoT14I	CCWWGG	4 cut(s)	12, 1278, 1553, 2379
ErhI	CCWWGG	4 cut(s)	12, 1278, 1553, 2379
Esp3I	CGTCTC	1 cut(s)	665
FalI	AAGNNNNNCTT	6 cut(s)	435, 467, 1461, 1493, 1560, 1592
FaqI	GGGAC	2 cut(s)	715, 1809
FauI	CCCGC	1 cut(s)	777
FblI	GTMKAC	1 cut(s)	1077
FokI	GGATG	6 cut(s)	641, 764, 1230, 1286, 2000, 2195
FspBI	CTAG	2 cut(s)	1350, 1565
FspI	TGCGCA	1 cut(s)	2310
GlaI	GCGC	2 cut(s)	780, 2310
GsaI	CCCAGC	3 cut(s)	701, 1726, 1885
GsuI	CTGGAG	1 cut(s)	1578
HaeIII	GGCC	2 cut(s)	250, 1634
HapII	CCGG	8 cut(s)	40, 53, 883, 927, 1014, 1247, 1823, 1947
HhaI	GCGC	2 cut(s)	781, 2311
Hin6I	GCGC	2 cut(s)	779, 2309
HinP1I	GCGC	2 cut(s)	779, 2309
HincII	GTYRAC	2 cut(s)	1095, 2038
HindII	GTYRAC	2 cut(s)	1095, 2038
HinfI	GANTC	5 cut(s)	886, 946, 1027, 1797, 2253
HpaI	GTTAAC	1 cut(s)	1095
HpaII	CCGG	8 cut(s)	40, 53, 883, 927, 1014, 1247, 1823, 1947
HphI	GGTGA	2 cut(s)	1820, 2129
Hpy166II	GTNNAC	5 cut(s)	899, 1078, 1095, 2038, 2204
Hpy188I	TCNGA	9 cut(s)	26, 108, 115, 1491, 1920, 2094, 2176, 2197, 2279
Hpy8I	GTNNAC	5 cut(s)	899, 1078, 1095, 2038, 2204
Hpy99I	CGWCG	2 cut(s)	1942, 2191
HpyCH4III	ACNGT	4 cut(s)	332, 1075, 1916, 2028
HpyCH4IV	ACGT	3 cut(s)	1549, 1937, 2304
HpyF3I	CTNAG	4 cut(s)	426, 435, 468, 1335
HpySE526I	ACGT	3 cut(s)	1549, 1937, 2304
HspAI	GCGC	2 cut(s)	779, 2309
Kpn2I	TCCGGA	2 cut(s)	1013, 1246
KspAI	GTTAAC	1 cut(s)	1095
Kzo9I	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
LmnI	GCTCC	6 cut(s)	27, 725, 1353, 1788, 2237, 2360
LweI	GCATC	9 cut(s)	78, 99, 400, 1264, 1981, 2117, 2149, 2173, 2209
MabI	ACCWGGT	1 cut(s)	1804
MaeI	CTAG	2 cut(s)	1350, 1565
MaeII	ACGT	3 cut(s)	1549, 1937, 2304
MaeIII	GTNAC	6 cut(s)	355, 816, 929, 1141, 1778, 2117
MalI	GATC	8 cut(s)	28, 50, 112, 605, 717, 1158, 1344, 1377
MboI	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
MflI	RGATCY	2 cut(s)	48, 1342
MhlI	GDGCHC	1 cut(s)	2206
MluCI	AATT	9 cut(s)	380, 499, 622, 705, 868, 1250, 1493, 1966, 2262
MlyI	GAGTC	2 cut(s)	1791, 2247
MmeI	TCCRAC	2 cut(s)	1825, 2338
MroI	TCCGGA	2 cut(s)	1013, 1246
MroXI	GAANNNNTTC	2 cut(s)	1317, 1485
MseI	TTAA	9 cut(s)	584, 1094, 1221, 1359, 1439, 1932, 2318, 2370, 2415
MslI	CAYNNNNRTG	2 cut(s)	1164, 1986
MspA1I	CMGCKG	5 cut(s)	467, 713, 960, 1064, 2421
MspI	CCGG	8 cut(s)	40, 53, 883, 927, 1014, 1247, 1823, 1947
MspR9I	CCNGG	5 cut(s)	40, 41, 53, 927, 1806
Mva1269I	GAATGC	2 cut(s)	89, 1948
MvaI	CCWGG	1 cut(s)	1806
NciI	CCSGG	4 cut(s)	40, 41, 53, 927
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
NlaIV	GGNNCC	9 cut(s)	50, 57, 237, 881, 925, 1344, 1560, 1728, 1845
NmuCI	GTSAC	2 cut(s)	1778, 2117
NsbI	TGCGCA	1 cut(s)	2310
NspI	RCATGY	4 cut(s)	1090, 1575, 1699, 1786
PaeI	GCATGC	1 cut(s)	1575
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	2 cut(s)	89, 1948
PdmI	GAANNNNTTC	2 cut(s)	1317, 1485
PfeI	GAWTC	3 cut(s)	886, 946, 1027
PflMI	CCANNNNNTGG	1 cut(s)	2139
PfoI	TCCNGGA	1 cut(s)	51
PleI	GAGTC	2 cut(s)	1791, 2247
PpsI	GAGTC	2 cut(s)	1791, 2247
PshBI	ATTAAT	1 cut(s)	1932
Psp6I	CCWGG	1 cut(s)	1804
PspFI	CCCAGC	3 cut(s)	697, 1722, 1881
PspGI	CCWGG	1 cut(s)	1804
PspN4I	GGNNCC	9 cut(s)	50, 57, 237, 881, 925, 1344, 1560, 1728, 1845
PspPI	GGNCC	2 cut(s)	16, 923
PsrI	GAACNNNNNNTAC	2 cut(s)	1372, 1404
PsuI	RGATCY	2 cut(s)	48, 1342
PvuII	CAGCTG	5 cut(s)	467, 713, 960, 1064, 2421
RsaI	GTAC	3 cut(s)	45, 1548, 1657
RsaNI	GTAC	3 cut(s)	44, 1547, 1656
RseI	CAYNNNNRTG	2 cut(s)	1164, 1986
SaqAI	TTAA	9 cut(s)	584, 1094, 1221, 1359, 1439, 1932, 2318, 2370, 2415
Sau3AI	GATC	8 cut(s)	26, 48, 110, 603, 715, 1156, 1342, 1375
Sau96I	GGNCC	2 cut(s)	16, 923
SchI	GAGTC	2 cut(s)	1791, 2247
ScrFI	CCNGG	5 cut(s)	40, 41, 53, 927, 1806
SduI	GDGCHC	1 cut(s)	2206
SexAI	ACCWGGT	1 cut(s)	1804
SfaNI	GCATC	9 cut(s)	78, 99, 400, 1264, 1981, 2117, 2149, 2173, 2209
SfcI	CTRYAG	2 cut(s)	276, 1074
SinI	GGWCC	2 cut(s)	16, 923
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	1164, 1986
SmlI	CTYRAG	1 cut(s)	2016
SmoI	CTYRAG	1 cut(s)	2016
SphI	GCATGC	1 cut(s)	1575
Sse9I	AATT	9 cut(s)	380, 499, 622, 705, 868, 1250, 1493, 1966, 2262
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	3 cut(s)	67, 770, 1786
SspMI	CTAG	2 cut(s)	1350, 1565
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	5 cut(s)	38, 39, 51, 925, 1804
StyI	CCWWGG	4 cut(s)	12, 1278, 1553, 2379
TaaI	ACNGT	4 cut(s)	332, 1075, 1916, 2028
TaiI	ACGT	3 cut(s)	1552, 1940, 2307
TaqI	TCGA	9 cut(s)	6, 99, 285, 378, 909, 1422, 1770, 1940, 2124
TasI	AATT	9 cut(s)	380, 499, 622, 705, 868, 1250, 1493, 1966, 2262
TatI	WGTACW	1 cut(s)	1655
TfiI	GAWTC	3 cut(s)	886, 946, 1027
Tru1I	TTAA	9 cut(s)	584, 1094, 1221, 1359, 1439, 1932, 2318, 2370, 2415
Tru9I	TTAA	9 cut(s)	584, 1094, 1221, 1359, 1439, 1932, 2318, 2370, 2415
TscAI	CASTG	7 cut(s)	940, 1078, 1540, 1627, 1919, 2033, 2106
TseFI	GTSAC	2 cut(s)	1778, 2117
Tsp45I	GTSAC	2 cut(s)	1778, 2117
TspGWI	ACGGA	3 cut(s)	61, 1529, 2356
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	7 cut(s)	940, 1078, 1540, 1627, 1919, 2033, 2106
Van91I	CCANNNNNTGG	1 cut(s)	2139
VneI	GTGCAC	1 cut(s)	2202
VpaK11BI	GGWCC	2 cut(s)	16, 923
VspI	ATTAAT	1 cut(s)	1932
XapI	RAATTY	2 cut(s)	499, 1250
XbaI	TCTAGA	1 cut(s)	1564
XceI	RCATGY	4 cut(s)	1090, 1575, 1699, 1786
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	1077
XmnI	GAANNNNTTC	2 cut(s)	1317, 1485
XspI	CTAG	2 cut(s)	1350, 1565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.