Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014306

Physical Location & Seq

Genomic Coordinates Forward (+)

63546836 .. 63555067

Gene Structure 8232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGCTAGACCCCATGGACCTACTCCGATCCAACCTCTCCCGGGTTCGGATCCCGGAGCCCACTAACCGCATCTACAAGCAAGAATGCTGCGTTTCTTTCGACACTCCGAGATCAGACGGTGGCTTGTTCGTTGACATGAGCACATTTCTTGCTTTTGGGAAGGATCATGTAGGATGGAACTATGAAAAGAGTGGAAATCCTGTTTATCTGCATATAAAGCAAACTAAAGTGTTGGTTCCTGAAGATAGGCCTTTAAAGAAACCAACGCTCATGGCTTTAGGTGTTGATGGTGGATTTGACAACAATGAACCTGAATATGAAGAAACTCACAGTATTGTTTTGTTGCCTGATTATGTGACTCTACCATTTCCTTCTGTTGAGCTGCCAGAGAAGGTAAGATTGGCGGTTGACAGCATTTTAATGGCTGAGGGTGCAGAGAAGAAAGAACAACTTGCAGCATGGACAGCCGATAAGAAGCAAACGAGTGTGTATGCAATGAATTTGCAACAAATTGACAATGGTATTGTTGTTCCTTCATCTGGGTGGAAATGTTCCAAGTGTGATAAAAGAGACAACCTTTGGATGAATCTAACTGATGGAACAATCCTTTGTGGGAGAAAAAATTGGGATGGTACTGGTGGAAATAACCATGCCATTGAACACTATAAGGATACAGGATTTCCTCTTGCTGTAAAGCTGGGGACAATTACAGCTGATCTGGAAGCAGCAGATGTTTTCTCTTACCCGGAGGATGATAGTGTTTTAGATCCACTTTTAGCACAGCATCTGGCATTTTTTGGCATTGATTTCTCCTCATTACAGAAGACAGAGATGACTACTGCTGAAAGAGAGCTTGACCAGAATACCAATTTTGACTGGAACCGAATTCAAGAAAGTGGACAGGAAGTCGAACCGATATTTGGACCTGGTTACACTGGCCTCGTTAATCTTGGAAACAGCTGCTACATGGCAGCAACCATGCAAGTAGTGTTCTCAACACATTCTTTCTATTCCAGGTACTACAAGAATCAAAGTTTGAAAACAGCATTTGACAAGGCTCCAGCTGATCCTACTGTAGATCTGAACATGCAGCTAACAAAGCTGGGACATGGTTTGCTATCTGGTAAATACTCTGTTCCTGTATCAGAGAAACAGGATGGAATACCTCCTCGTATGTTCAAGGCGGTTATTGCTGCCAGTCATCCTGAATTTTCTTCCATGAGACAACAGGATGCCTTGGAGTTCTTCCTGCACTTTCTTGACCAAGTTGAACGGGCTCATGGTGGAAATCCTGAAATTGATCCTGCAAGGAGTTTCAAGTTTGAAGAGCTTGCAGCATTTCAGAAACTGAAAGCTGAAAAGATTTCGGAAGGCAAGGAAGTATCCAATGATGAAATTGTACGTCCAAGGGTTCCTCTAGAAGCTTGCCTTGCAAGCTTTTCATCACCAGAAGAGATACAGGATTTTTACAGCACTGCCTTGAAGGCCAAGACAACAGCCGTGAAGAGTGCAGGTCTAACTTCATTCCCTGACTATTTGGTGCTGCACATGCGAAAATTTGTAATGGAGGCAGGCTGGGTGCCAAAAAAGCTTGATGTCTATATAGATGTTCCTGATATCATAGATATTAGTCACATGCGCAGTAAGGGACTTCAACACGGAGAAGAGTTGCTACCAGAGAGTGTTCCTGGAGAAGAGGAGGAACCAACTAAGCCTGTGGCCGATGAGAATATTGTTACCCAACTTGTTTCAATGGGATTTAATCATCTTCACTGTCAGAAAGCTGCCATTAATACCTCAAATGTCGGAGTGGAAGAGGCAATGAATTGGCTACTTTCTCACATGGATGATCCAGATATAGACGCACCCATCTCTCAAGGCAGACAAATTGCGGTTGACCAATCAAAAGTTGATATGTTGATATCATTTGGTTTTCAGGAAGATTTCGCTCGGACTGCATTAAAAGCATCGATTGCAACTACTGAAGAGTTGGCAGCCTTTTCTTCTTCTTACACTATTATTTTACTTTTACAGGGTGGTGACATTGAGAAAGCCACAGATTGGATATTCAACAATCCTTTGGCTCCTATCTCAACTGATATGGATGCAACATCATCAGAAACTATAGCTACTGCTGCTGAAGCTGGACTTCCTGATGGAGGAGGGAGATATAGACTTATTGGAATAGTAAGCCATATTGGAACGTCTACACTATGTGGTCACTATGTCGCACACATCTTTAAAGATGGTAGATGGGCTATTTTCAATGATGCGAAGGTTGGGGCTTCTGTCAATCCCCCGAAGGACATGGGATATCTTTATTTCTTTGAGAGACTAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

781

Amino Acids

86.62

Weight (kDa)

4.94

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP_var	PF17807	15 - 76	1.1e-21	Variant UBP zinc finger
zf-UBP	PF02148	184 - 257	8.5e-18	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	312 - 776	1.2e-42	Ubiquitin carboxyl-terminal hydrolase
UBA_7	PF22562	575 - 622	1.6e-20	UBA-like domain
UBA	PF00627	575 - 611	1.6e-06	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20630
fragaria_vesca	FvH4_3g21160 FvH4_3g21160
malus_domestica	MD03G1217200.v1.1 MD11G1234900.v1.1
prunus_persica	Prupe.4G192200_v2.0.a1
pyrus_communis	pycom11g20650
rosa_chinensis	RchiOBHm_Chr5g0036241
rosa_laevigata	RLG00000033681
rosa_multiflora	Rmu_sc0000247.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044540
rosa_rugosa	Rorug05G0154300
rosa_samantha	Rh5AG248000 Rh5BG248600 Rh5CG279900 Rh5DG256900
rosa_wichuraiana	Rw5G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1640
Acc36I	ACCTGC	1 cut(s)	1502
AccB1I	GGYRCC	1 cut(s)	1579
AccB7I	CCANNNNNTGG	1 cut(s)	2061
AccI	GTMKAC	1 cut(s)	2207
AciI	CCGC	4 cut(s)	67, 404, 1184, 1892
AclWI	GGATC	8 cut(s)	21, 43, 56, 171, 761, 1061, 1295, 1844
AcoI	YGGCCR	1 cut(s)	1719
AcsI	RAATTY	4 cut(s)	499, 885, 1208, 1556
AcuI	CTGAAG	3 cut(s)	261, 2004, 2160
AdeI	CACNNNGTG	1 cut(s)	2216
AfaI	GTAC	3 cut(s)	634, 1019, 1401
AfiI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2061, 2159
AhdI	GACNNNNNGTC	1 cut(s)	905
AjnI	CCWGG	3 cut(s)	925, 1013, 1687
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 903, 935
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	3 cut(s)	564, 1216, 2326
AlwI	GGATC	8 cut(s)	21, 43, 56, 171, 761, 1061, 1295, 1844
AlwNI	CAGNNNCTG	2 cut(s)	787, 1348
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	4 cut(s)	248, 937, 1485, 1719
ApoI	RAATTY	4 cut(s)	499, 885, 1208, 1556
AseI	ATTAAT	1 cut(s)	1791
AspLEI	GCGC	1 cut(s)	1641
AspS9I	GGNCC	2 cut(s)	16, 923
AsuC2I	CCSGG	4 cut(s)	40, 41, 53, 746
AsuHPI	GGTGA	2 cut(s)	1437, 2051
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	16, 923
BamHI	GGATCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	1579
BanII	GRGCYC	2 cut(s)	60, 1279
BarI	GAAGNNNNNNTAC	2 cut(s)	1656, 1688
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	9 cut(s)	168, 281, 590, 623, 1151, 1877, 2150, 2240, 2247
BceAI	ACGGC	1 cut(s)	1484
BciT130I	CCWGG	3 cut(s)	927, 1015, 1689
BciVI	GTATCC	2 cut(s)	664, 1393
BcnI	CCSGG	4 cut(s)	40, 41, 53, 746
BcoDI	GTCTC	3 cut(s)	564, 1216, 2326
BfaI	CTAG	2 cut(s)	5, 1418
BfmI	CTRYAG	2 cut(s)	1074, 2124
BfuAI	ACCTGC	1 cut(s)	1502
BfuI	GTATCC	2 cut(s)	664, 1393
BglI	GCCNNNNNGGC	1 cut(s)	1484
BglII	AGATCT	1 cut(s)	1078
Bme1390I	CCNGG	7 cut(s)	40, 41, 53, 746, 927, 1015, 1689
Bme18I	GGWCC	2 cut(s)	16, 923
BmeRI	GACNNNNNGTC	1 cut(s)	905
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	16, 923
BmiI	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1413, 1581, 1704, 2085
BmrFI	CCNGG	7 cut(s)	40, 41, 53, 746, 927, 1015, 1689
BmsI	GCATC	6 cut(s)	78, 793, 1222, 1976, 2095, 2260
BpiI	GAAGAC	1 cut(s)	830
BpmI	CTGGAG	2 cut(s)	1044, 1710
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	1860
BpuMI	CCSGG	4 cut(s)	40, 41, 53, 746
Bsa29I	ATCGAT	1 cut(s)	1970
BsaJI	CCNNGG	4 cut(s)	12, 39, 1236, 1406
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2061, 2159
Bse1I	ACTGG	4 cut(s)	640, 881, 940, 1197
Bse3DI	GCAATG	2 cut(s)	501, 1827
BseBI	CCWGG	3 cut(s)	927, 1015, 1689
BseCI	ATCGAT	1 cut(s)	1970
BseDI	CCNNGG	4 cut(s)	12, 39, 1236, 1406
BseGI	GGATG	9 cut(s)	179, 588, 634, 757, 1162, 1201, 1237, 1852, 2110
BseLI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2061, 2159
BseMI	GCAATG	2 cut(s)	501, 1827
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	640, 881, 940, 1197
BseRI	GAGGAG	4 cut(s)	802, 1158, 1712, 2175
BseYI	CCCAGC	3 cut(s)	697, 1102, 1575
BsgI	GTGCAG	4 cut(s)	453, 1235, 1529, 1530
BshFI	GGCC	4 cut(s)	250, 939, 1487, 1721
BshNI	GGYRCC	1 cut(s)	1579
BshVI	ATCGAT	1 cut(s)	1970
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	40, 53, 746
BslFI	GGGAC	3 cut(s)	715, 1119, 1662
BslI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2061, 2159
BsmAI	GTCTC	3 cut(s)	564, 1216, 2326
BsmFI	GGGAC	3 cut(s)	715, 1119, 1662
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	250, 939, 1487, 1721
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	60, 143, 1279
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	67, 404, 1184, 1892
BspANI	GGCC	4 cut(s)	250, 939, 1487, 1721
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	1970
BspLI	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1413, 1581, 1704, 2085
BspMI	ACCTGC	1 cut(s)	1502
BspPI	GGATC	8 cut(s)	21, 43, 56, 171, 761, 1061, 1295, 1844
BspQI	GCTCTTC	1 cut(s)	1320
BspT107I	GGYRCC	1 cut(s)	1579
BsrDI	GCAATG	2 cut(s)	501, 1827
BsrI	ACTGG	4 cut(s)	640, 881, 940, 1197
BssECI	CCNNGG	4 cut(s)	12, 39, 1236, 1406
BssT1I	CCWWGG	3 cut(s)	12, 1236, 1406
Bst2UI	CCWGG	3 cut(s)	927, 1015, 1689
Bst4CI	ACNGT	5 cut(s)	119, 332, 1075, 1775, 2342
Bst6I	CTCTTC	7 cut(s)	1320, 1446, 1499, 1659, 1689, 1809, 1980
BstAPI	GCANNNNNTGC	1 cut(s)	1973
BstC8I	GCNNGC	4 cut(s)	1332, 1426, 1435, 1573
BstDEI	CTNAG	2 cut(s)	426, 1710
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	2157
BstF5I	GGATG	9 cut(s)	179, 588, 634, 757, 1162, 1201, 1237, 1852, 2110
BstHHI	GCGC	1 cut(s)	1641
BstMAI	GTCTC	3 cut(s)	564, 1216, 2326
BstNI	CCWGG	3 cut(s)	927, 1015, 1689
BstNSI	RCATGY	3 cut(s)	1090, 1552, 1639
BstSCI	CCNGG	7 cut(s)	38, 39, 51, 744, 925, 1013, 1687
BstSFI	CTRYAG	2 cut(s)	1074, 2124
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	3 cut(s)	48, 766, 1078
BstYI	RGATCY	3 cut(s)	48, 766, 1078
Bsu15I	ATCGAT	1 cut(s)	1970
BsuI	GTATCC	2 cut(s)	664, 1393
BsuRI	GGCC	4 cut(s)	250, 939, 1487, 1721
BsuTUI	ATCGAT	1 cut(s)	1970
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	9 cut(s)	179, 588, 634, 757, 1162, 1201, 1237, 1852, 2110
BtsI	GCAGTG	1 cut(s)	1473
BtsIMutI	CAGTG	3 cut(s)	933, 1473, 1771
BveI	ACCTGC	1 cut(s)	1502
Cac8I	GCNNGC	4 cut(s)	1332, 1426, 1435, 1573
CaiI	CAGNNNCTG	2 cut(s)	787, 1348
CfoI	GCGC	1 cut(s)	1641
Cfr13I	GGNCC	2 cut(s)	16, 923
Cfr9I	CCCGGG	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	1970
CseI	GACGC	1 cut(s)	1871
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	3 cut(s)	633, 1018, 1400
CviQI	GTAC	3 cut(s)	633, 1018, 1400
DdeI	CTNAG	2 cut(s)	426, 1710
DraI	TTTAAA	2 cut(s)	255, 2242
DraIII	CACNNNGTG	1 cut(s)	2216
DriI	GACNNNNNGTC	1 cut(s)	905
EaeI	YGGCCR	1 cut(s)	1719
Eam1104I	CTCTTC	7 cut(s)	1320, 1446, 1499, 1659, 1689, 1809, 1980
Eam1105I	GACNNNNNGTC	1 cut(s)	905
EarI	CTCTTC	7 cut(s)	1320, 1446, 1499, 1659, 1689, 1809, 1980
Eco130I	CCWWGG	3 cut(s)	12, 1236, 1406
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	60, 1279
Eco32I	GATATC	3 cut(s)	1618, 1923, 2315
Eco47I	GGWCC	2 cut(s)	16, 923
Eco57I	CTGAAG	3 cut(s)	261, 2004, 2160
Eco88I	CYCGRG	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	2157
EcoRI	GAATTC	1 cut(s)	885
EcoRII	CCWGG	3 cut(s)	925, 1013, 1687
EcoRV	GATATC	3 cut(s)	1618, 1923, 2315
EcoT14I	CCWWGG	3 cut(s)	12, 1236, 1406
EcoT38I	GRGCYC	2 cut(s)	60, 1279
ErhI	CCWWGG	3 cut(s)	12, 1236, 1406
FalI	AAGNNNNNCTT	6 cut(s)	435, 467, 1413, 1445, 2133, 2165
FaqI	GGGAC	3 cut(s)	715, 1119, 1662
FblI	GTMKAC	1 cut(s)	2207
FokI	GGATG	9 cut(s)	186, 595, 641, 764, 1169, 1188, 1244, 1859, 2117
FriOI	GRGCYC	2 cut(s)	60, 1279
FspBI	CTAG	2 cut(s)	5, 1418
FspI	TGCGCA	1 cut(s)	1640
GlaI	GCGC	1 cut(s)	1640
GsaI	CCCAGC	3 cut(s)	701, 1106, 1579
GsuI	CTGGAG	2 cut(s)	1044, 1710
HaeIII	GGCC	4 cut(s)	250, 939, 1487, 1721
HapII	CCGG	3 cut(s)	40, 53, 746
HgaI	GACGC	1 cut(s)	1871
HhaI	GCGC	1 cut(s)	1641
Hin6I	GCGC	1 cut(s)	1639
HinP1I	GCGC	1 cut(s)	1639
HincII	GTYRAC	3 cut(s)	133, 409, 1897
HindII	GTYRAC	3 cut(s)	133, 409, 1897
HindIII	AAGCTT	3 cut(s)	1422, 1435, 1589
HinfI	GANTC	3 cut(s)	358, 586, 1027
HpaII	CCGG	3 cut(s)	40, 53, 746
HphI	GGTGA	2 cut(s)	1437, 2051
Hpy166II	GTNNAC	5 cut(s)	133, 409, 899, 1897, 2208
Hpy8I	GTNNAC	5 cut(s)	133, 409, 899, 1897, 2208
HpyAV	CCTTC	8 cut(s)	154, 381, 385, 543, 1364, 1477, 2269, 2296
HpyCH4III	ACNGT	5 cut(s)	119, 332, 1075, 1775, 2342
HpyCH4IV	ACGT	2 cut(s)	1402, 2204
HpyF3I	CTNAG	2 cut(s)	426, 1710
HpySE526I	ACGT	2 cut(s)	1402, 2204
HspAI	GCGC	1 cut(s)	1639
LguI	GCTCTTC	1 cut(s)	1320
LmnI	GCTCC	3 cut(s)	55, 1063, 2089
LweI	GCATC	6 cut(s)	78, 793, 1222, 1976, 2095, 2260
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	2 cut(s)	5, 1418
MaeII	ACGT	2 cut(s)	1402, 2204
MaeIII	GTNAC	6 cut(s)	355, 929, 1631, 1735, 2039, 2219
MflI	RGATCY	3 cut(s)	48, 766, 1078
MhlI	GDGCHC	3 cut(s)	60, 143, 1279
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	54, 1786
MseI	TTAA	7 cut(s)	254, 419, 945, 1761, 1791, 1961, 2241
MslI	CAYNNNNRTG	3 cut(s)	419, 541, 1845
MspA1I	CMGCKG	3 cut(s)	713, 960, 1064
MspI	CCGG	3 cut(s)	40, 53, 746
MspR9I	CCNGG	7 cut(s)	40, 41, 53, 746, 927, 1015, 1689
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	3 cut(s)	927, 1015, 1689
NciI	CCSGG	4 cut(s)	40, 41, 53, 746
NcoI	CCATGG	1 cut(s)	12
NlaIV	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1413, 1581, 1704, 2085
NmuCI	GTSAC	4 cut(s)	355, 1631, 2039, 2219
NsbI	TGCGCA	1 cut(s)	1640
NspI	RCATGY	3 cut(s)	1090, 1552, 1639
PceI	AGGCCT	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	1320
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	586, 1027
PflMI	CCANNNNNTGG	1 cut(s)	2061
PfoI	TCCNGGA	2 cut(s)	51, 1687
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	1791
Psp6I	CCWGG	3 cut(s)	925, 1013, 1687
PspFI	CCCAGC	3 cut(s)	697, 1102, 1575
PspGI	CCWGG	3 cut(s)	925, 1013, 1687
PspN4I	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1413, 1581, 1704, 2085
PspPI	GGNCC	2 cut(s)	16, 923
PstNI	CAGNNNCTG	2 cut(s)	787, 1348
PsuI	RGATCY	3 cut(s)	48, 766, 1078
PvuII	CAGCTG	3 cut(s)	713, 960, 1064
RsaI	GTAC	3 cut(s)	634, 1019, 1401
RsaNI	GTAC	3 cut(s)	633, 1018, 1400
RseI	CAYNNNNRTG	3 cut(s)	419, 541, 1845
SapI	GCTCTTC	1 cut(s)	1320
SaqAI	TTAA	7 cut(s)	254, 419, 945, 1761, 1791, 1961, 2241
Sau96I	GGNCC	2 cut(s)	16, 923
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	7 cut(s)	40, 41, 53, 746, 927, 1015, 1689
SduI	GDGCHC	3 cut(s)	60, 143, 1279
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	6 cut(s)	78, 793, 1222, 1976, 2095, 2260
SfcI	CTRYAG	2 cut(s)	1074, 2124
SinI	GGWCC	2 cut(s)	16, 923
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	3 cut(s)	419, 541, 1845
SmlI	CTYRAG	1 cut(s)	1875
SmoI	CTYRAG	1 cut(s)	1875
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	4 cut(s)	67, 404, 1184, 1892
SspI	AATATT	1 cut(s)	1732
SspMI	CTAG	2 cut(s)	5, 1418
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	7 cut(s)	38, 39, 51, 744, 925, 1013, 1687
StyI	CCWWGG	3 cut(s)	12, 1236, 1406
TaaI	ACNGT	5 cut(s)	119, 332, 1075, 1775, 2342
TaiI	ACGT	2 cut(s)	1405, 2207
TaqI	TCGA	3 cut(s)	99, 909, 1970
TfiI	GAWTC	2 cut(s)	586, 1027
Tru1I	TTAA	7 cut(s)	254, 419, 945, 1761, 1791, 1961, 2241
Tru9I	TTAA	7 cut(s)	254, 419, 945, 1761, 1791, 1961, 2241
TscAI	CASTG	3 cut(s)	940, 1480, 1778
TseFI	GTSAC	4 cut(s)	355, 1631, 2039, 2219
Tsp45I	GTSAC	4 cut(s)	355, 1631, 2039, 2219
TspGWI	ACGGA	1 cut(s)	1674
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	3 cut(s)	940, 1480, 1778
Van91I	CCANNNNNTGG	1 cut(s)	2061
VpaK11BI	GGWCC	2 cut(s)	16, 923
VspI	ATTAAT	1 cut(s)	1791
XagI	CCTNNNNNAGG	1 cut(s)	2157
XapI	RAATTY	4 cut(s)	499, 885, 1208, 1556
XbaI	TCTAGA	1 cut(s)	1417
XceI	RCATGY	3 cut(s)	1090, 1552, 1639
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	2207
XspI	CTAG	2 cut(s)	5, 1418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.