Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014306

Physical Location & Seq

Genomic Coordinates Reverse (-)

14344647 .. 14345472

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTCAAACACCCCCTCCAACTCCAATTCCAACTCCAACTCCAACTCCAACTCCTAGTCCTACTTCAATTAGAACAGTACTACTTCGTCACCAAAACCCTCCTGATCATGATATAAATCCACCCCCTCATGATCTCAATGTTATGATCATTTTGGCAGCCATTTGCTGCGCTTTTGTTTGTGCCCTCGGCCTCAATTCCATGCTCCAATGCGTTTTTCAGTGCGTAAATCGTGCCATAACCGAACCAGTCCGATGGGTCGCTTCACGTAGGCTAAATTCAGGTCTAAAGAAGAAGGAAATGGTAGCTTTGCCAACTTCAACTTATTCGAACTCATCAAGCTCTTCTCCATCACCATCATCATCTCCGGGCTGTGCTATTTGTCTCGTGGACTTCTCCGATGGGGACAAGATTCGGGTGCTGCCCAAATGCAACCATCGGTTTCATGTTGTGTGCATTGACAAGTGGTTGCAGTCTCACTCATCCTGCCCTACTTGCCGGCAGAGACTCAAGTCTTCCAGTGATTCCATGCTCTCTCTATCTGAGATTGTCACAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

186

Amino Acids

20.23

Weight (kDa)

8.84

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	125 - 167	4.1e-15	Ring finger domain
zf-RING_11	PF17123	125 - 153	1.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	125 - 166	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	125 - 166	4.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	135 - 171	1.6e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	138 - 167	2.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20630
fragaria_vesca	FvH4_3g21160 FvH4_3g21160
malus_domestica	MD03G1217200.v1.1 MD11G1234900.v1.1
prunus_persica	Prupe.4G192200_v2.0.a1
pyrus_communis	pycom11g20650
rosa_chinensis	RchiOBHm_Chr5g0036241
rosa_laevigata	RLG00000033681
rosa_multiflora	Rmu_sc0000247.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044540
rosa_rugosa	Rorug05G0154300
rosa_samantha	Rh5AG248000 Rh5BG248600 Rh5CG279900 Rh5DG256900
rosa_wichuraiana	Rw5G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	69, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	308, 342
AluI	AGCT	2 cut(s)	308, 342
Alw26I	GTCTC	3 cut(s)	389, 480, 499
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	158, 168, 421
ApoI	RAATTY	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	83, 345
AsuII	TTCGAA	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	155, 170, 408
BccI	CCATC	5 cut(s)	249, 358, 364, 395, 444
BclI	TGATCA	2 cut(s)	106, 147
BcnI	CCSGG	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	389, 480, 499
BfaI	CTAG	2 cut(s)	57, 559
BisI	GCNGC	3 cut(s)	159, 169, 422
BlsI	GCNGC	3 cut(s)	160, 170, 423
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	369
BoxI	GACNNNNGTC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	7 cut(s)	25, 31, 31, 37, 55, 61, 67
Bse118I	RCCGGY	1 cut(s)	498
Bse1I	ACTGG	2 cut(s)	248, 519
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	482
BseJI	GATNNNNATC	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	248, 519
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	155, 170, 408
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	368, 499
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	389, 480, 499
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	106, 133, 147
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	535
BspHI	TCATGA	2 cut(s)	109, 130
BspQI	GCTCTTC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	248, 519
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	106, 133, 147
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	349
BstBAI	YACGTR	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	109, 136, 150
BstMAI	GTCTC	3 cut(s)	389, 480, 499
BstMBI	GATC	3 cut(s)	106, 133, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstPAI	GACNNNNGTC	1 cut(s)	511
BstSCI	CCNGG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	155, 170, 408
BstV2I	GAAGAC	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	227, 526
Cac8I	GCNNGC	1 cut(s)	500
CciI	TCATGA	2 cut(s)	109, 130
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	110, 131, 202, 446, 529
CviJI	RGCY	7 cut(s)	5, 161, 192, 274, 308, 342, 372
CviKI_1	RGCY	7 cut(s)	5, 161, 192, 274, 308, 342, 372
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	3 cut(s)	108, 135, 149
DpnII	GATC	3 cut(s)	106, 133, 147
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
FaeI	CATG	5 cut(s)	113, 134, 205, 449, 532
FaiI	YATR	8 cut(s)	111, 116, 132, 146, 203, 239, 447, 530
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	5 cut(s)	109, 130, 201, 445, 528
FbaI	TGATCA	2 cut(s)	106, 147
Fnu4HI	GCNGC	3 cut(s)	159, 169, 422
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	3 cut(s)	159, 169, 422
FspBI	CTAG	2 cut(s)	57, 559
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	159, 169, 422
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	368, 499
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	113, 134, 205, 449, 532
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	3 cut(s)	412, 507, 524
HpaII	CCGG	2 cut(s)	368, 499
HphI	GGTGA	2 cut(s)	83, 345
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	3 cut(s)	254, 400, 544
Hpy188III	TCNNGA	3 cut(s)	104, 110, 131
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	432, 456, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	113, 134, 205, 449, 532
HspAI	GCGC	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	498
KroNI	GCCGGC	1 cut(s)	500
Ksp22I	TGATCA	2 cut(s)	106, 147
Kzo9I	GATC	3 cut(s)	106, 133, 147
LguI	GCTCTTC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	117, 261, 267, 381, 499, 512, 532
Lsp1109I	GCAGC	3 cut(s)	155, 170, 408
MaeI	CTAG	2 cut(s)	57, 559
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	2 cut(s)	89, 550
MalI	GATC	3 cut(s)	108, 135, 149
MboI	GATC	3 cut(s)	106, 133, 147
MboII	GAAGA	3 cut(s)	304, 336, 507
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	4 cut(s)	27, 69, 196, 277
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	5 cut(s)	44, 56, 62, 68, 74
MnlI	CCTC	5 cut(s)	27, 111, 138, 197, 203
MroNI	GCCGGC	1 cut(s)	498
MspI	CCGG	2 cut(s)	368, 499
MspR9I	CCNGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	495
NaeI	GCCGGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	3 cut(s)	106, 133, 147
NgoMIV	GCCGGC	1 cut(s)	498
NlaIII	CATG	5 cut(s)	113, 134, 205, 449, 532
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	89, 550
NspV	TTCGAA	1 cut(s)	329
PagI	TCATGA	2 cut(s)	109, 130
PciSI	GCTCTTC	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	412, 524
PkrI	GCNGC	3 cut(s)	160, 170, 423
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	269
PshAI	GACNNNNGTC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	349
SatI	GCNGC	3 cut(s)	159, 169, 422
Sau3AI	GATC	3 cut(s)	106, 133, 147
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	5 cut(s)	271, 286, 310, 344, 560
SfuI	TTCGAA	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	27, 69, 196, 277
SspMI	CTAG	2 cut(s)	57, 559
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	329
TasI	AATT	4 cut(s)	27, 69, 196, 277
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	412, 524
TscAI	CASTG	2 cut(s)	227, 526
TseFI	GTSAC	2 cut(s)	89, 550
TseI	GCWGC	3 cut(s)	158, 168, 421
Tsp45I	GTSAC	2 cut(s)	89, 550
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	2 cut(s)	227, 526
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	2 cut(s)	57, 559
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.