Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014306

Physical Location & Seq

Genomic Coordinates Reverse (-)

30426293 .. 30434675

Gene Structure 8383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGCTAGACGCCATGGACCTGCTCCGATCCAACCTCTCCCGGGTTCGGATCCCGGAGCCCACTAACCGCATCTACAAGCAAGAATGCTGCGTTTCTTTCGACACTCCGAGATCAGACGGTGGCTTGTTCGTTGACATGAGCACATTTCTTGCTTTTGGGAAGGATCATGTAGGATGGAACTATGAAAAGAGTGGAAATCCTGTTTATCTGCATATAAAGCAAACTAAAGTGTTGGTTCCTGAAGATAGGCCTTTAAAGAAACCAACGCTCATGGCTATAGGTGTTGATGGTGGATTTGACAACAATGAACCTGAATATGAAGAAACTCACAGTATTGTTTTGTTGCCTGATTATGTGACTCTACCATTTCCTTCTGTTGAGCTGCCAGAGAAGGTAAGATTGGCGGTTGACAGCATTTTAATGGCTGAGGGTGCAGAGAAGAAAGAACAACTTGCAGCATGGACAGCCGATAAGAAGCAAACGAGTGTGTATGCAATGAATTTGCAACAAATTGACAATGGTATTGTTGTTCCTTCATCTGGGTGGAAATGTACCAAGTGTGATAAAAGAGACAACCTTTGGATGAATCTAACTGATGGAACGATCCTTTGTGGGAGAAAAAATTGGGATGGTACTGGTGGAAATAACCATGCCATTGAACACTATAAGGATACAGGATTTCCTCTTGCTGTAAAGCTAGGGACAATTACAGCTGATCTGGAAGCAGCAGATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTAGATCCACTTTTAGCACAACATCTGGCATTTTTTGGCATTGATTTCTCCTCATTACAGAAGACAGAGATGACTACTGCTGAAAGAGAGCTTGACCAGAATACCAATTTTGACTGGAACCGAATTCAAGAAAGTGGACAGGAAGTCGAACCGATATTTGGACCTGGTTACACTGGCCTCGTCAATCTTGGAAACAGCTGCTACATGGCAGCAACCATGCAAGTAGTGTTCTCAACACATTCTTTCTATTCCAGGTACTACAAGAATCAAAGTTTGAAAACAGCATTTGAGAAGGCTCCAGCTGACCCTACTGTAGATCTGAACATGCAGCTAACAAAGCTGGGACATGGTTTGCTATCTGGTAAATACTCTGTTCCTGTATCAGAGGAAAAAGATCAGACAAATTCTATCACCCCTACCACAAATTCAAAACAGGATGGAATACCTCCTCGTATGTTCAAGGCGGTCATTGCTGCTAGTCATCCTGAATTTTCTTCCATGAGACAACAGGATGCCTTGGAGTTCTTCCTGCACTTTCTTGACCAAGTTGAACGGGCTCATGGTGGAAGTCCTGAAATTGATCCTGCAAGGAGTTTCAAGTTTGGTATTGAAGATCGTATTCTTTGTTCATCTGGAAAAGTTGCTTACAATAGGAGACTGGACTACATTCTTTCCTTAAACATCCCGCTGCATGAAGCTACTAATAAAGTAGAGCTCGCAGCATTTCAGAAACTGAAAGCTGAAAAGATTTCGGAAGGCAAGGAAGTATCCAATGATGAAATTGTACGTCCAAGGGTTCCTCTTGAAGCTTGCCTTGCAAGCTTTTCATCACCAGAAGAGATACAGGATTTTTACAGCACTGCCTTGAAGGCCAAGACAACAGCTGTGAAGAGTGCAGGTCTAACTTCATTCCCTGACTATTTGGTGTTGCACATGCGAAAATTTGTAATGGAGGCAGGCTGGGTGCCAAAAAAGCTTGATGTCTATATAGATGTTCCTGATATCATAGATATTAGTCACATGCGCAGTAAGGGACTTCAACATGGAGAGGAGTTGCTACCAGAGAGTGTTCCTGGAGAAGAGGAGGAACCAACTAAGCCTGTGGCCGATGAGAATATTGTTACCCAACTTTTTTCAATGGGATTTAGTCATCTTTACTGTCAGAAAGCTGCCATTAATACCTCAAATGTCGGAGTGGAAGAGGCAATGAATTGGCTACTTTCTCACATGGATGATCCAGATATGGACGCACCCATCTCTCAAGGCAGACAAATTGCGGTTGACCAATCAAAAGTTGATACGTTGATATCATTTGGTTTTCAGGAAGATATCGCTCGGGCTGCATTAAAAGCATCGGGTGGTGACATTGAGAAAGCCACAGATTGGATATTCAACAATCCTGATGCTTCTGTCTCAACTGATATGGACGCAACATCATCAGAAACTATACCTACTGCTGCTGAAGCTGGACTGCCTGATGGAGGAGGGAGATATAGACTTATTGGAATAGTAAGCCATATTGGAACGTCTACACTATGTGGTCACTATGTCGCACACATCTTTAAAGATGGTAGATGGGTTATTTTCAATGATGCGAAGGTTGGGGCCTCTGTCAATCCCCCGAAGGACATGGGATATCTTTATTTCTTTGAGAGACTAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0016049 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0036211 GO:0036459 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070011 GO:0070646 GO:0070647 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0101005 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA UCH zf-UBP

Protein Analysis

809

Amino Acids

89.78

Weight (kDa)

5.0

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP_var	PF17807	15 - 76	1.1e-21	Variant UBP zinc finger
zf-UBP	PF02148	184 - 257	1.3e-17	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	312 - 804	1.5e-43	Ubiquitin carboxyl-terminal hydrolase
UBA_7	PF22562	624 - 671	2e-19	UBA-like domain
UBA	PF00627	681 - 717	4.9e-09	UBA/TS-N domain
UBA_7	PF22562	682 - 724	2.7e-09	UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20630
fragaria_vesca	FvH4_3g21160 FvH4_3g21160
malus_domestica	MD03G1217200.v1.1 MD11G1234900.v1.1
prunus_persica	Prupe.4G192200_v2.0.a1
pyrus_communis	pycom11g20650
rosa_chinensis	RchiOBHm_Chr5g0036241
rosa_laevigata	RLG00000033681
rosa_multiflora	Rmu_sc0000247.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044540
rosa_rugosa	Rorug05G0154300
rosa_samantha	Rh5AG248000 Rh5BG248600 Rh5CG279900 Rh5DG256900
rosa_wichuraiana	Rw5G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1787
Acc36I	ACCTGC	2 cut(s)	27, 1649
AccB1I	GGYRCC	1 cut(s)	1726
AccB7I	CCANNNNNTGG	1 cut(s)	2145
AccI	GTMKAC	1 cut(s)	2291
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	5 cut(s)	67, 404, 1226, 1448, 2039
AclWI	GGATC	8 cut(s)	21, 43, 56, 171, 598, 761, 1337, 1991
AcoI	YGGCCR	1 cut(s)	1866
AcsI	RAATTY	6 cut(s)	499, 885, 1165, 1186, 1250, 1703
AcuI	CTGAAG	2 cut(s)	261, 2244
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	2300
AfaI	GTAC	4 cut(s)	553, 634, 1019, 1548
AfiI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2145, 2243
AhdI	GACNNNNNGTC	1 cut(s)	905
AjnI	CCWGG	3 cut(s)	925, 1013, 1834
AjuI	GAANNNNNNNTTGG	4 cut(s)	383, 415, 903, 935
Alw21I	GWGCWC	2 cut(s)	143, 1479
Alw26I	GTCTC	5 cut(s)	564, 1258, 1411, 2179, 2410
AlwI	GGATC	8 cut(s)	21, 43, 56, 171, 598, 761, 1337, 1991
AlwNI	CAGNNNCTG	1 cut(s)	1495
Ama87I	CYCGRG	2 cut(s)	39, 2097
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	5 cut(s)	248, 937, 1632, 1866, 2367
ApoI	RAATTY	6 cut(s)	499, 885, 1165, 1186, 1250, 1703
AseI	ATTAAT	1 cut(s)	1938
AspLEI	GCGC	1 cut(s)	1788
AspS9I	GGNCC	3 cut(s)	16, 923, 2367
AsuC2I	CCSGG	3 cut(s)	40, 41, 53
AsuHPI	GGTGA	3 cut(s)	1165, 1584, 2135
AvaI	CYCGRG	2 cut(s)	39, 2097
AvaII	GGWCC	2 cut(s)	16, 923
BamHI	GGATCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	1726
BanII	GRGCYC	3 cut(s)	60, 1321, 1479
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	2 cut(s)	143, 1479
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	9 cut(s)	168, 281, 590, 623, 1193, 2024, 2234, 2324, 2331
BciT130I	CCWGG	3 cut(s)	927, 1015, 1836
BciVI	GTATCC	2 cut(s)	664, 1540
BcnI	CCSGG	3 cut(s)	40, 41, 53
BcoDI	GTCTC	5 cut(s)	564, 1258, 1411, 2179, 2410
BfaI	CTAG	3 cut(s)	5, 698, 1239
BfmI	CTRYAG	2 cut(s)	276, 1074
BfuAI	ACCTGC	2 cut(s)	27, 1649
BfuI	GTATCC	2 cut(s)	664, 1540
BglI	GCCNNNNNGGC	1 cut(s)	1631
BglII	AGATCT	1 cut(s)	1078
Bme1390I	CCNGG	6 cut(s)	40, 41, 53, 927, 1015, 1836
Bme18I	GGWCC	2 cut(s)	16, 923
BmeRI	GACNNNNNGTC	1 cut(s)	905
BmeT110I	CYCGRG	2 cut(s)	39, 2097
BmgT120I	GGNCC	3 cut(s)	16, 923, 2367
BmiI	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1560, 1728, 1851, 2368
BmrFI	CCNGG	6 cut(s)	40, 41, 53, 927, 1015, 1836
BmsI	GCATC	5 cut(s)	78, 1264, 2123, 2155, 2344
BpiI	GAAGAC	1 cut(s)	830
BpmI	CTGGAG	2 cut(s)	1044, 1857
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	2007
BpuMI	CCSGG	3 cut(s)	40, 41, 53
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	4 cut(s)	12, 39, 1278, 1553
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2145, 2243
Bse1I	ACTGG	4 cut(s)	640, 881, 940, 1425
Bse3DI	GCAATG	3 cut(s)	501, 1230, 1974
BseAI	TCCGGA	1 cut(s)	745
BseBI	CCWGG	3 cut(s)	927, 1015, 1836
BseDI	CCNNGG	4 cut(s)	12, 39, 1278, 1553
BseGI	GGATG	9 cut(s)	179, 588, 634, 757, 1204, 1243, 1279, 1443, 1999
BseLI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2145, 2243
BseMI	GCAATG	3 cut(s)	501, 1230, 1974
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	640, 881, 940, 1425
BseRI	GAGGAG	5 cut(s)	802, 1200, 1826, 1859, 2259
BseYI	CCCAGC	2 cut(s)	1102, 1722
BsgI	GTGCAG	3 cut(s)	453, 1277, 1677
BshFI	GGCC	5 cut(s)	250, 939, 1634, 1868, 2369
BshNI	GGYRCC	1 cut(s)	1726
BsiHKAI	GWGCWC	2 cut(s)	143, 1479
BsiHKCI	CYCGRG	2 cut(s)	39, 2097
BsiSI	CCGG	3 cut(s)	40, 53, 746
BslFI	GGGAC	3 cut(s)	715, 1119, 1809
BslI	CCNNNNNNNGG	6 cut(s)	40, 45, 539, 920, 2145, 2243
BsmAI	GTCTC	5 cut(s)	564, 1258, 1411, 2179, 2410
BsmFI	GGGAC	3 cut(s)	715, 1119, 1809
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	5 cut(s)	250, 939, 1634, 1868, 2369
BsoBI	CYCGRG	2 cut(s)	39, 2097
Bsp1286I	GDGCHC	4 cut(s)	60, 143, 1321, 1479
Bsp13I	TCCGGA	1 cut(s)	745
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	5 cut(s)	67, 404, 1226, 1448, 2039
BspANI	GGCC	5 cut(s)	250, 939, 1634, 1868, 2369
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	745
BspLI	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1560, 1728, 1851, 2368
BspMI	ACCTGC	2 cut(s)	27, 1649
BspPI	GGATC	8 cut(s)	21, 43, 56, 171, 598, 761, 1337, 1991
BspT107I	GGYRCC	1 cut(s)	1726
BsrDI	GCAATG	3 cut(s)	501, 1230, 1974
BsrI	ACTGG	4 cut(s)	640, 881, 940, 1425
BssECI	CCNNGG	4 cut(s)	12, 39, 1278, 1553
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	3 cut(s)	12, 1278, 1553
Bst2UI	CCWGG	3 cut(s)	927, 1015, 1836
Bst4CI	ACNGT	5 cut(s)	119, 332, 1075, 1922, 2426
Bst6I	CTCTTC	4 cut(s)	1593, 1646, 1836, 1956
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	4 cut(s)	1479, 1573, 1582, 1720
BstDEI	CTNAG	2 cut(s)	426, 1857
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	2241
BstF5I	GGATG	9 cut(s)	179, 588, 634, 757, 1204, 1243, 1279, 1443, 1999
BstHHI	GCGC	1 cut(s)	1788
BstMAI	GTCTC	5 cut(s)	564, 1258, 1411, 2179, 2410
BstNI	CCWGG	3 cut(s)	927, 1015, 1836
BstNSI	RCATGY	3 cut(s)	1090, 1699, 1786
BstSCI	CCNGG	6 cut(s)	38, 39, 51, 925, 1013, 1834
BstSFI	CTRYAG	2 cut(s)	276, 1074
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	3 cut(s)	48, 766, 1078
BstYI	RGATCY	3 cut(s)	48, 766, 1078
BsuI	GTATCC	2 cut(s)	664, 1540
BsuRI	GGCC	5 cut(s)	250, 939, 1634, 1868, 2369
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	9 cut(s)	179, 588, 634, 757, 1204, 1243, 1279, 1443, 1999
BtsI	GCAGTG	1 cut(s)	1620
BtsIMutI	CAGTG	2 cut(s)	933, 1620
BveI	ACCTGC	2 cut(s)	27, 1649
Cac8I	GCNNGC	4 cut(s)	1479, 1573, 1582, 1720
CaiI	CAGNNNCTG	1 cut(s)	1495
CfoI	GCGC	1 cut(s)	1788
Cfr13I	GGNCC	3 cut(s)	16, 923, 2367
Cfr9I	CCCGGG	1 cut(s)	39
CseI	GACGC	3 cut(s)	17, 2018, 2198
CsiI	ACCWGGT	1 cut(s)	925
Csp6I	GTAC	4 cut(s)	552, 633, 1018, 1547
CviQI	GTAC	4 cut(s)	552, 633, 1018, 1547
DdeI	CTNAG	2 cut(s)	426, 1857
DraI	TTTAAA	2 cut(s)	255, 2326
DraIII	CACNNNGTG	1 cut(s)	2300
DriI	GACNNNNNGTC	1 cut(s)	905
EaeI	YGGCCR	1 cut(s)	1866
Eam1104I	CTCTTC	4 cut(s)	1593, 1646, 1836, 1956
Eam1105I	GACNNNNNGTC	1 cut(s)	905
EarI	CTCTTC	4 cut(s)	1593, 1646, 1836, 1956
Ecl136II	GAGCTC	1 cut(s)	1477
Eco130I	CCWWGG	3 cut(s)	12, 1278, 1553
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	3 cut(s)	60, 1321, 1479
Eco32I	GATATC	4 cut(s)	1765, 2070, 2092, 2399
Eco47I	GGWCC	2 cut(s)	16, 923
Eco53kI	GAGCTC	1 cut(s)	1477
Eco57I	CTGAAG	2 cut(s)	261, 2244
Eco88I	CYCGRG	2 cut(s)	39, 2097
EcoICRI	GAGCTC	1 cut(s)	1477
EcoNI	CCTNNNNNAGG	1 cut(s)	2241
EcoO109I	RGGNCCY	1 cut(s)	2367
EcoRI	GAATTC	1 cut(s)	885
EcoRII	CCWGG	3 cut(s)	925, 1013, 1834
EcoRV	GATATC	4 cut(s)	1765, 2070, 2092, 2399
EcoT14I	CCWWGG	3 cut(s)	12, 1278, 1553
EcoT38I	GRGCYC	3 cut(s)	60, 1321, 1479
ErhI	CCWWGG	3 cut(s)	12, 1278, 1553
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 1560, 1592
FaqI	GGGAC	3 cut(s)	715, 1119, 1809
FauI	CCCGC	1 cut(s)	1455
FblI	GTMKAC	1 cut(s)	2291
FokI	GGATG	9 cut(s)	186, 595, 641, 764, 1211, 1230, 1286, 1430, 2006
FriOI	GRGCYC	3 cut(s)	60, 1321, 1479
FspBI	CTAG	3 cut(s)	5, 698, 1239
FspI	TGCGCA	1 cut(s)	1787
GlaI	GCGC	1 cut(s)	1787
GsaI	CCCAGC	2 cut(s)	1106, 1726
GsuI	CTGGAG	2 cut(s)	1044, 1857
HaeIII	GGCC	5 cut(s)	250, 939, 1634, 1868, 2369
HapII	CCGG	3 cut(s)	40, 53, 746
HgaI	GACGC	3 cut(s)	17, 2018, 2198
HhaI	GCGC	1 cut(s)	1788
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	1786
HinP1I	GCGC	1 cut(s)	1786
HincII	GTYRAC	3 cut(s)	133, 409, 2044
HindII	GTYRAC	3 cut(s)	133, 409, 2044
HindIII	AAGCTT	3 cut(s)	1569, 1582, 1736
HinfI	GANTC	3 cut(s)	358, 586, 1027
HpaII	CCGG	3 cut(s)	40, 53, 746
HphI	GGTGA	3 cut(s)	1165, 1584, 2135
Hpy166II	GTNNAC	5 cut(s)	133, 409, 899, 2044, 2292
Hpy8I	GTNNAC	5 cut(s)	133, 409, 899, 2044, 2292
HpyAV	CCTTC	9 cut(s)	154, 381, 385, 543, 1048, 1511, 1624, 2353, 2380
HpyCH4III	ACNGT	5 cut(s)	119, 332, 1075, 1922, 2426
HpyCH4IV	ACGT	3 cut(s)	1549, 2063, 2288
HpyF3I	CTNAG	2 cut(s)	426, 1857
HpySE526I	ACGT	3 cut(s)	1549, 2063, 2288
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	1 cut(s)	1786
Kpn2I	TCCGGA	1 cut(s)	745
LmnI	GCTCC	3 cut(s)	27, 55, 1063
LweI	GCATC	5 cut(s)	78, 1264, 2123, 2155, 2344
MabI	ACCWGGT	1 cut(s)	925
MaeI	CTAG	3 cut(s)	5, 698, 1239
MaeII	ACGT	3 cut(s)	1549, 2063, 2288
MaeIII	GTNAC	6 cut(s)	355, 929, 1778, 1882, 2123, 2303
MflI	RGATCY	3 cut(s)	48, 766, 1078
MhlI	GDGCHC	4 cut(s)	60, 143, 1321, 1479
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	54, 1933
MroI	TCCGGA	1 cut(s)	745
MseI	TTAA	6 cut(s)	254, 419, 1439, 1938, 2108, 2325
MslI	CAYNNNNRTG	3 cut(s)	419, 541, 1992
MspA1I	CMGCKG	5 cut(s)	713, 960, 1064, 1450, 1646
MspI	CCGG	3 cut(s)	40, 53, 746
MspR9I	CCNGG	6 cut(s)	40, 41, 53, 927, 1015, 1836
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	3 cut(s)	927, 1015, 1836
NciI	CCSGG	3 cut(s)	40, 41, 53
NcoI	CCATGG	1 cut(s)	12
NlaIV	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1560, 1728, 1851, 2368
NmuCI	GTSAC	4 cut(s)	355, 1778, 2123, 2303
NsbI	TGCGCA	1 cut(s)	1787
NspI	RCATGY	3 cut(s)	1090, 1699, 1786
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	586, 1027
PflMI	CCANNNNNTGG	1 cut(s)	2145
PfoI	TCCNGGA	2 cut(s)	51, 1834
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	1938
Psp124BI	GAGCTC	1 cut(s)	1479
Psp6I	CCWGG	3 cut(s)	925, 1013, 1834
PspFI	CCCAGC	2 cut(s)	1102, 1722
PspGI	CCWGG	3 cut(s)	925, 1013, 1834
PspN4I	GGNNCC	9 cut(s)	50, 57, 237, 881, 1059, 1560, 1728, 1851, 2368
PspPI	GGNCC	3 cut(s)	16, 923, 2367
PsrI	GAACNNNNNNTAC	2 cut(s)	1372, 1404
PstNI	CAGNNNCTG	1 cut(s)	1495
PsuI	RGATCY	3 cut(s)	48, 766, 1078
PvuII	CAGCTG	4 cut(s)	713, 960, 1064, 1646
RsaI	GTAC	4 cut(s)	553, 634, 1019, 1548
RsaNI	GTAC	4 cut(s)	552, 633, 1018, 1547
RseI	CAYNNNNRTG	3 cut(s)	419, 541, 1992
SacI	GAGCTC	1 cut(s)	1479
SaqAI	TTAA	6 cut(s)	254, 419, 1439, 1938, 2108, 2325
Sau96I	GGNCC	3 cut(s)	16, 923, 2367
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	6 cut(s)	40, 41, 53, 927, 1015, 1836
SduI	GDGCHC	4 cut(s)	60, 143, 1321, 1479
SexAI	ACCWGGT	1 cut(s)	925
SfaNI	GCATC	5 cut(s)	78, 1264, 2123, 2155, 2344
SfcI	CTRYAG	2 cut(s)	276, 1074
SinI	GGWCC	2 cut(s)	16, 923
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	3 cut(s)	419, 541, 1992
SmlI	CTYRAG	1 cut(s)	2022
SmoI	CTYRAG	1 cut(s)	2022
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	5 cut(s)	67, 404, 1226, 1448, 2039
SspI	AATATT	1 cut(s)	1879
SspMI	CTAG	3 cut(s)	5, 698, 1239
SstI	GAGCTC	1 cut(s)	1479
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	6 cut(s)	38, 39, 51, 925, 1013, 1834
StyI	CCWWGG	3 cut(s)	12, 1278, 1553
TaaI	ACNGT	5 cut(s)	119, 332, 1075, 1922, 2426
TaiI	ACGT	3 cut(s)	1552, 2066, 2291
TaqI	TCGA	2 cut(s)	99, 909
TfiI	GAWTC	2 cut(s)	586, 1027
Tru1I	TTAA	6 cut(s)	254, 419, 1439, 1938, 2108, 2325
Tru9I	TTAA	6 cut(s)	254, 419, 1439, 1938, 2108, 2325
TscAI	CASTG	2 cut(s)	940, 1627
TseFI	GTSAC	4 cut(s)	355, 1778, 2123, 2303
Tsp45I	GTSAC	4 cut(s)	355, 1778, 2123, 2303
TspMI	CCCGGG	1 cut(s)	39
TspRI	CASTG	2 cut(s)	940, 1627
Van91I	CCANNNNNTGG	1 cut(s)	2145
VpaK11BI	GGWCC	2 cut(s)	16, 923
VspI	ATTAAT	1 cut(s)	1938
XagI	CCTNNNNNAGG	1 cut(s)	2241
XapI	RAATTY	6 cut(s)	499, 885, 1165, 1186, 1250, 1703
XceI	RCATGY	3 cut(s)	1090, 1699, 1786
XmaI	CCCGGG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	2291
XspI	CTAG	3 cut(s)	5, 698, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.