Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005602

Physical Location & Seq

Genomic Coordinates Forward (+)

1067607 .. 1073622

Gene Structure 6016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1010500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGGTTTATTGGGTGATTCAAAAGGGGGAGGGGGCGACGGAGGAAGTGGAAGAAACGGCGGTTCATGGGGCGGCCGGCATAGTTTGATACGGCGGAAACAGGTGGATTCTGTTCATGTGAAGTCACGGGGTCATCAATTGGCCAAGGAGTTGACTGTTCCCCATCTTGTTGCAATTGGGGTTGGCTCAACGATAGGAGCAGGAGTCTATATTCTTGTTGGAACAGTTGCTAGAGAGCATTCTGGACCAGCACTAGCAATTTCCTTTCTAATAGCTGGAATTGCGGCAGCCCTTTCTGCCTTTTGTTATGCTGAACTTGCAAGTCGGTGCCCTTCTGCAGGGAGTGCCTATCACTATACATATATATGCATTGGAGAAGGTGTCGCTTGGTTAGTCGGTTGGGCTTTGATTCTAGAATATACAATTGGTGGCTCTGCAGTTGCTCGGGGCATATCACCTAATCTGGCATTACTTTTTGGAGGAGAGGACAGTCTGCCTGCTATTATAGCCCGGCAACATATTCCTGCACTTGGTCTAGTGGTTGACCCATGTGCAGCAATTCTAGTATTTATTGTTACAGGGCTCTTGTGTGTTGGAATCAAGGAGAGTACAGTAGCACAAGGCATTGTGACGATAGCGAATGTATGTGCAATGATATTTGTTGTAGTAGCTGGTACTTATTTGGGTTTCAAGTCTGGCTGGACTGGATATGAACTTCCTACTGGGTACTTTCCCTTTGGGGTGAATGGTATGCTTGCTGGGTCTGCGACTGTCTTCTTTGCATACATTGGTTTTGATTCAGTTGCCAGCACTGCTGAAGAGGTGAAGAATCCTCAACGAGATTTGCCACTTGGTATTGGTGCTGCACTATCTATTTGCTGTGCGTTGTATATGTTGGTTTCGATGGTCATTGTTGGTTTAGTGCCTTATTATGCAATGGATCCTGATACACCAATTTCCAGTGCATTTGCTAGTCATGGGATGCAATGGGCAGCGTATGTGATAACTGTTGGAGCTGTGACTGCTCTCTGCTCAACATTGATGGGCTCTATTCTTCCTCAGCCACGAATCCTGATGGCCATGTCTAGAGATGGATTGCTGCCACCATTTTTCGCAGATATTAGTGAAAAAACTCAGGTTCCTGTCAAGAGTACAATAGCAACTGGGATGTGTTCTGCAGTCTTGGCCTTCTTTATGGATGTTTCACAGCTGGCAGGAATGGTTAGTGTGGGTACACTTGTTGCATTCACTATGGTAGCAGTATCTGTACTGATACTCAGATATGTTCCGCCAGATGAGGTGCCTATGCCTTCGTCTCTTCGGGAGTCAATTGATTCAGTGTGGTTACGACGTGGAAGGAATTCTCAAGAGATCAATGTGGAAGATCCTAAGACTGGTGTTAGTTCTTCAAAGGAGAGTACCAAGCCTCTACTCGAGGAAGTGGATATCATGGTTGAACTTCCTCTGATTAAAAGGCAACTGCCTCTTATTAACTACACAATAAGTGAAGATAAAAGGCGTAAAATTGCTGGCTGGACCATAATGTTCACATGTGTCGGTGTGCTTCTCCTGACATATTCAGCTTCAGATTTGGCCATTCCCAGCTTTTTTCGCTATACATTTTGTGGAGGTGGCGGTATTCTTCTTTTATTAGGTCTGATTGTGCTCACATGTATTGATCAAGATGATGCACGGCACACCTTTGGGCACACAGGAGGTTTCTTATGCCCATTTGTCCCATTGCTACCTATCATCTGTATTCTCATCAACGTCTACCTACTGATAAATCTTGGAGCGGACACGTGGGCGCGTGTTGCTGTATGGCTGCTAATAGGAGTGGTTGTTTATATATTTTATGGCCGATCACACAGCTCATTGGAGGATGCAGTTTACGTGCCAGTAGCTCACGCTGATGAGATCTTTCGGAGCTCAGAAAATTATGTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

650

Amino Acids

68.83

Weight (kDa)

5.96

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	53 - 433	3.4e-52	Amino acid permease
AA_permease	PF00324	55 - 425	4.8e-40	Amino acid permease
AA_permease_C	PF13906	574 - 624	7.7e-22	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58030 AT5G36940
fragaria_vesca	FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560
malus_domestica	MD12G1010500.v1.1 MD14G1007600.v1.1
prunus_persica	Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1
pyrus_communis	pycom12g00820 pycom14g00610
rosa_chinensis	RchiOBHm_Chr3g0496211
rosa_laevigata	RLG00000022551
rosa_roxburghii	Rroxscaffold_6G00389450
rosa_rugosa	Rorug03G0280500
rosa_samantha	Rh3AG327600 Rh3BG363200 Rh3BG363600 Rh3CG360600 Rh3DG363600
rosa_wichuraiana	Rw3G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	327, 1300
AccBSI	CCGCTC	1 cut(s)	1796
AccI	GTMKAC	1 cut(s)	1773
AccII	CGCG	1 cut(s)	1810
AciI	CCGC	7 cut(s)	60, 72, 94, 284, 1289, 1635, 1796
AclWI	GGATC	3 cut(s)	935, 948, 1379
AcoI	YGGCCR	5 cut(s)	73, 141, 1077, 1593, 1858
AcsI	RAATTY	1 cut(s)	1360
AcuI	CTGAAG	2 cut(s)	837, 1569
AcvI	CACGTG	1 cut(s)	1803
AfaI	GTAC	7 cut(s)	610, 676, 728, 1153, 1234, 1269, 1420
AfiI	CCNNNNNNNGG	3 cut(s)	338, 530, 1394
AflIII	ACRYGT	3 cut(s)	1550, 1670, 1800
AgsI	TTSAA	4 cut(s)	21, 691, 1410, 1457
AjiI	CACGTC	1 cut(s)	1352
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	9 cut(s)	275, 671, 1016, 1210, 1583, 1605, 1872, 1904, 1929
AluI	AGCT	9 cut(s)	275, 671, 1016, 1210, 1583, 1605, 1872, 1904, 1929
Alw21I	GWGCWC	2 cut(s)	1668, 1931
Alw26I	GTCTC	1 cut(s)	1320
AlwI	GGATC	3 cut(s)	935, 948, 1379
AlwNI	CAGNNNCTG	1 cut(s)	1265
Ama87I	CYCGRG	2 cut(s)	444, 1433
AoxI	GGCC	6 cut(s)	73, 141, 1077, 1185, 1593, 1858
ApeKI	GCWGC	6 cut(s)	287, 554, 863, 992, 1099, 1825
ApoI	RAATTY	1 cut(s)	1360
Asp700I	GAANNNNTTC	1 cut(s)	1360
AspLEI	GCGC	1 cut(s)	1810
AspS9I	GGNCC	2 cut(s)	245, 1536
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	4 cut(s)	26, 447, 754, 835
AvaI	CYCGRG	2 cut(s)	444, 1433
AvaII	GGWCC	2 cut(s)	245, 1536
BaeGI	GKGCMC	2 cut(s)	332, 1710
BaeI	ACNNNNGTAYC	2 cut(s)	1224, 1257
BalI	TGGCCA	3 cut(s)	143, 1079, 1595
BamHI	GGATCC	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	327, 1300
BanII	GRGCYC	3 cut(s)	585, 1049, 1931
BbrPI	CACGTG	1 cut(s)	1803
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	2 cut(s)	1668, 1931
BbvCI	CCTCAGC	1 cut(s)	1059
BbvI	GCAGC	6 cut(s)	299, 566, 850, 1004, 1086, 1812
BccI	CCATC	5 cut(s)	171, 898, 1036, 1069, 1085
BceAI	ACGGC	3 cut(s)	73, 107, 1709
BclI	TGATCA	1 cut(s)	1678
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	1320
BfaI	CTAG	7 cut(s)	231, 254, 413, 536, 563, 972, 1086
BfmI	CTRYAG	3 cut(s)	336, 435, 1176
BglII	AGATCT	1 cut(s)	1917
BisI	GCNGC	8 cut(s)	73, 285, 288, 555, 864, 993, 1100, 1826
BlsI	GCNGC	8 cut(s)	74, 286, 289, 556, 865, 994, 1101, 1827
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	2 cut(s)	245, 1536
BmeT110I	CYCGRG	2 cut(s)	444, 1433
BmgBI	CACGTC	1 cut(s)	1352
BmgT120I	GGNCC	2 cut(s)	245, 1536
BmiI	GGNNCC	4 cut(s)	329, 942, 1140, 1302
BmrFI	CCNGG	1 cut(s)	511
BmrI	ACTGGG	2 cut(s)	732, 1173
BmsI	GCATC	3 cut(s)	972, 1678, 1873
BmuI	ACTGGG	2 cut(s)	732, 1173
BpiI	GAAGAC	1 cut(s)	766
Bpu10I	CCTNAGC	1 cut(s)	1059
BpuEI	CTTGAG	1 cut(s)	1350
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	2 cut(s)	1803, 1894
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	6 cut(s)	189, 219, 366, 396, 1827, 1857
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 530, 1394
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	6 cut(s)	709, 727, 960, 1168, 1399, 1898
Bse3DI	GCAATG	4 cut(s)	657, 942, 992, 1739
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	4 cut(s)	987, 1173, 1204, 1888
BseLI	CCNNNNNNNGG	3 cut(s)	338, 530, 1394
BseMI	GCAATG	4 cut(s)	657, 942, 992, 1739
BseMII	CTCAG	4 cut(s)	1073, 1148, 1291, 1944
BseNI	ACTGG	6 cut(s)	709, 727, 960, 1168, 1399, 1898
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	2 cut(s)	332, 1710
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	6 cut(s)	299, 566, 850, 1004, 1086, 1812
BseYI	CCCAGC	2 cut(s)	758, 1601
BsgI	GTGCAG	3 cut(s)	510, 573, 849
Bsh1236I	CGCG	1 cut(s)	1810
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	6 cut(s)	75, 143, 1079, 1187, 1595, 1860
BshNI	GGYRCC	2 cut(s)	327, 1300
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	1668, 1931
BsiHKCI	CYCGRG	2 cut(s)	444, 1433
BsiSI	CCGG	2 cut(s)	76, 511
BslFI	GGGAC	1 cut(s)	1721
BslI	CCNNNNNNNGG	3 cut(s)	338, 530, 1394
BsmAI	GTCTC	1 cut(s)	1320
BsmBI	CGTCTC	1 cut(s)	1320
BsmFI	GGGAC	1 cut(s)	1721
BsmI	GAATGC	2 cut(s)	238, 1244
BsnI	GGCC	6 cut(s)	75, 143, 1079, 1187, 1595, 1860
BsoBI	CYCGRG	2 cut(s)	444, 1433
Bsp1286I	GDGCHC	6 cut(s)	332, 585, 1049, 1668, 1710, 1931
Bsp143I	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
BspACI	CCGC	7 cut(s)	60, 72, 94, 284, 1289, 1635, 1796
BspANI	GGCC	6 cut(s)	75, 143, 1079, 1187, 1595, 1860
BspCNI	CTCAG	4 cut(s)	1072, 1147, 1290, 1943
BspFNI	CGCG	1 cut(s)	1810
BspLI	GGNNCC	4 cut(s)	329, 942, 1140, 1302
BspMAI	CTGCAG	3 cut(s)	340, 439, 1180
BspPI	GGATC	3 cut(s)	935, 948, 1379
BspT107I	GGYRCC	2 cut(s)	327, 1300
BsrBI	CCGCTC	1 cut(s)	1796
BsrDI	GCAATG	4 cut(s)	657, 942, 992, 1739
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	6 cut(s)	709, 727, 960, 1168, 1399, 1898
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	6 cut(s)	157, 226, 491, 613, 772, 1009
Bst6I	CTCTTC	2 cut(s)	813, 1323
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	2 cut(s)	1803, 1894
BstC8I	GCNNGC	6 cut(s)	77, 498, 756, 808, 1212, 1531
BstDEI	CTNAG	5 cut(s)	1059, 1134, 1277, 1389, 1930
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	4 cut(s)	987, 1173, 1204, 1888
BstFNI	CGCG	1 cut(s)	1810
BstHHI	GCGC	1 cut(s)	1810
BstKTI	GATC	6 cut(s)	943, 1374, 1387, 1681, 1865, 1920
BstMAI	GTCTC	1 cut(s)	1320
BstMBI	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
BstMCI	CGRYCG	1 cut(s)	76
BstNSI	RCATGY	2 cut(s)	1554, 1674
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	3 cut(s)	336, 435, 1176
BstSLI	GKGCMC	2 cut(s)	332, 1710
BstUI	CGCG	1 cut(s)	1810
BstV1I	GCAGC	6 cut(s)	299, 566, 850, 1004, 1086, 1812
BstV2I	GAAGAC	1 cut(s)	766
BstX2I	RGATCY	3 cut(s)	940, 1384, 1917
BstYI	RGATCY	3 cut(s)	940, 1384, 1917
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	6 cut(s)	75, 143, 1079, 1187, 1595, 1860
BtrI	CACGTC	1 cut(s)	1352
BtsCI	GGATG	4 cut(s)	987, 1173, 1204, 1888
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	810, 967, 1344
Cac8I	GCNNGC	6 cut(s)	77, 498, 756, 808, 1212, 1531
CaiI	CAGNNNCTG	1 cut(s)	1265
CfoI	GCGC	1 cut(s)	1810
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	245, 1536
Csp6I	GTAC	7 cut(s)	609, 675, 727, 1152, 1233, 1268, 1419
CviAII	CATG	8 cut(s)	66, 116, 549, 977, 1081, 1450, 1551, 1671
CviQI	GTAC	7 cut(s)	609, 675, 727, 1152, 1233, 1268, 1419
DdeI	CTNAG	5 cut(s)	1059, 1134, 1277, 1389, 1930
DpnI	GATC	6 cut(s)	942, 1373, 1386, 1680, 1864, 1919
DpnII	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
EaeI	YGGCCR	5 cut(s)	73, 141, 1077, 1593, 1858
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	813, 1323
EarI	CTCTTC	2 cut(s)	813, 1323
EciI	GGCGGA	2 cut(s)	109, 1278
Ecl136II	GAGCTC	1 cut(s)	1929
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	3 cut(s)	585, 1049, 1931
Eco32I	GATATC	1 cut(s)	1447
Eco47I	GGWCC	2 cut(s)	245, 1536
Eco52I	CGGCCG	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	1929
Eco57I	CTGAAG	2 cut(s)	837, 1569
Eco72I	CACGTG	1 cut(s)	1803
Eco88I	CYCGRG	2 cut(s)	444, 1433
EcoICRI	GAGCTC	1 cut(s)	1929
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	1360
EcoRV	GATATC	1 cut(s)	1447
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	3 cut(s)	585, 1049, 1931
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	1320
FaeI	CATG	8 cut(s)	69, 119, 552, 980, 1084, 1453, 1554, 1674
FaqI	GGGAC	1 cut(s)	1721
FatI	CATG	8 cut(s)	65, 115, 548, 976, 1080, 1449, 1550, 1670
FbaI	TGATCA	1 cut(s)	1678
FblI	GTMKAC	1 cut(s)	1773
Fnu4HI	GCNGC	8 cut(s)	73, 285, 288, 555, 864, 993, 1100, 1826
FokI	GGATG	4 cut(s)	994, 1180, 1211, 1895
FriOI	GRGCYC	3 cut(s)	585, 1049, 1931
Fsp4HI	GCNGC	8 cut(s)	73, 285, 288, 555, 864, 993, 1100, 1826
FspBI	CTAG	7 cut(s)	231, 254, 413, 536, 563, 972, 1086
GlaI	GCGC	1 cut(s)	1809
GluI	GCNGC	8 cut(s)	73, 285, 288, 555, 864, 993, 1100, 1826
GsaI	CCCAGC	2 cut(s)	762, 1605
HaeIII	GGCC	6 cut(s)	75, 143, 1079, 1187, 1595, 1860
HapII	CCGG	2 cut(s)	76, 511
HhaI	GCGC	1 cut(s)	1810
Hin1II	CATG	8 cut(s)	69, 119, 552, 980, 1084, 1453, 1554, 1674
Hin6I	GCGC	1 cut(s)	1808
HinP1I	GCGC	1 cut(s)	1808
HincII	GTYRAC	2 cut(s)	153, 544
HindII	GTYRAC	2 cut(s)	153, 544
HpaII	CCGG	2 cut(s)	76, 511
HphI	GGTGA	4 cut(s)	26, 447, 754, 835
Hpy166II	GTNNAC	6 cut(s)	153, 544, 1235, 1548, 1774, 1891
Hpy188I	TCNGA	6 cut(s)	1280, 1467, 1588, 1659, 1926, 1933
Hpy8I	GTNNAC	6 cut(s)	153, 544, 1235, 1548, 1774, 1891
Hpy99I	CGWCG	2 cut(s)	41, 1353
HpyAV	CCTTC	5 cut(s)	342, 371, 1198, 1320, 1350
HpyCH4III	ACNGT	6 cut(s)	157, 226, 491, 613, 772, 1009
HpyCH4IV	ACGT	4 cut(s)	1351, 1770, 1802, 1893
HpyF3I	CTNAG	5 cut(s)	1059, 1134, 1277, 1389, 1930
HpySE526I	ACGT	4 cut(s)	1351, 1770, 1802, 1893
Hsp92II	CATG	8 cut(s)	69, 119, 552, 980, 1084, 1453, 1554, 1674
HspAI	GCGC	1 cut(s)	1808
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	1678
Kzo9I	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
LmnI	GCTCC	4 cut(s)	197, 1013, 1793, 1926
Lsp1109I	GCAGC	6 cut(s)	299, 566, 850, 1004, 1086, 1812
LweI	GCATC	3 cut(s)	972, 1678, 1873
MaeI	CTAG	7 cut(s)	231, 254, 413, 536, 563, 972, 1086
MaeII	ACGT	4 cut(s)	1351, 1770, 1802, 1893
MaeIII	GTNAC	5 cut(s)	123, 574, 628, 1018, 1344
MalI	GATC	6 cut(s)	942, 1373, 1386, 1680, 1864, 1919
MbiI	CCGCTC	1 cut(s)	1796
MboI	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
MfeI	CAATTG	4 cut(s)	137, 174, 423, 1329
MflI	RGATCY	3 cut(s)	940, 1384, 1917
MhlI	GDGCHC	6 cut(s)	332, 585, 1049, 1668, 1710, 1931
MlsI	TGGCCA	3 cut(s)	143, 1079, 1595
MluNI	TGGCCA	3 cut(s)	143, 1079, 1595
MlyI	GAGTC	2 cut(s)	213, 1334
MmeI	TCCRAC	3 cut(s)	199, 574, 991
Mox20I	TGGCCA	3 cut(s)	143, 1079, 1595
Mph1103I	ATGCAT	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	1360
MscI	TGGCCA	3 cut(s)	143, 1079, 1595
MseI	TTAA	2 cut(s)	1470, 1491
MslI	CAYNNNNRTG	2 cut(s)	364, 1911
Msp20I	TGGCCA	3 cut(s)	143, 1079, 1595
MspA1I	CMGCKG	1 cut(s)	1210
MspI	CCGG	2 cut(s)	76, 511
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	4 cut(s)	137, 174, 423, 1329
Mva1269I	GAATGC	2 cut(s)	238, 1244
MvnI	CGCG	1 cut(s)	1810
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	8 cut(s)	69, 119, 552, 980, 1084, 1453, 1554, 1674
NlaIV	GGNNCC	4 cut(s)	329, 942, 1140, 1302
NmuCI	GTSAC	3 cut(s)	123, 628, 1018
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	2 cut(s)	1554, 1674
PaeR7I	CTCGAG	1 cut(s)	1433
PciI	ACATGT	2 cut(s)	1550, 1670
PctI	GAATGC	2 cut(s)	238, 1244
PdiI	GCCGGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	1360
PfeI	GAWTC	8 cut(s)	17, 107, 409, 597, 797, 829, 1068, 1334
PkrI	GCNGC	8 cut(s)	74, 286, 289, 556, 865, 994, 1101, 1827
PleI	GAGTC	2 cut(s)	212, 1333
PmaCI	CACGTG	1 cut(s)	1803
PmlI	CACGTG	1 cut(s)	1803
PpsI	GAGTC	2 cut(s)	212, 1333
Ppu21I	YACGTR	2 cut(s)	1803, 1894
PscI	ACATGT	2 cut(s)	1550, 1670
Psp124BI	GAGCTC	1 cut(s)	1931
PspCI	CACGTG	1 cut(s)	1803
PspFI	CCCAGC	2 cut(s)	758, 1601
PspN4I	GGNNCC	4 cut(s)	329, 942, 1140, 1302
PspPI	GGNCC	2 cut(s)	245, 1536
PspXI	VCTCGAGB	1 cut(s)	1433
PstI	CTGCAG	3 cut(s)	340, 439, 1180
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	3 cut(s)	940, 1384, 1917
PvuII	CAGCTG	1 cut(s)	1210
RsaI	GTAC	7 cut(s)	610, 676, 728, 1153, 1234, 1269, 1420
RsaNI	GTAC	7 cut(s)	609, 675, 727, 1152, 1233, 1268, 1419
RseI	CAYNNNNRTG	2 cut(s)	364, 1911
SacI	GAGCTC	1 cut(s)	1931
SaqAI	TTAA	2 cut(s)	1470, 1491
SatI	GCNGC	8 cut(s)	73, 285, 288, 555, 864, 993, 1100, 1826
Sau3AI	GATC	6 cut(s)	940, 1371, 1384, 1678, 1862, 1917
Sau96I	GGNCC	2 cut(s)	245, 1536
SchI	GAGTC	2 cut(s)	213, 1334
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	6 cut(s)	332, 585, 1049, 1668, 1710, 1931
SfaNI	GCATC	3 cut(s)	972, 1678, 1873
SfcI	CTRYAG	3 cut(s)	336, 435, 1176
Sfr274I	CTCGAG	1 cut(s)	1433
SinI	GGWCC	2 cut(s)	245, 1536
SlaI	CTCGAG	1 cut(s)	1433
SmiMI	CAYNNNNRTG	2 cut(s)	364, 1911
SmlI	CTYRAG	2 cut(s)	1365, 1433
SmoI	CTYRAG	2 cut(s)	1365, 1433
SsiI	CCGC	7 cut(s)	60, 72, 94, 284, 1289, 1635, 1796
SspMI	CTAG	7 cut(s)	231, 254, 413, 536, 563, 972, 1086
SstI	GAGCTC	1 cut(s)	1931
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	6 cut(s)	157, 226, 491, 613, 772, 1009
TaiI	ACGT	4 cut(s)	1354, 1773, 1805, 1896
TaqI	TCGA	2 cut(s)	902, 1434
TatI	WGTACW	3 cut(s)	608, 1151, 1267
TauI	GCSGC	2 cut(s)	75, 287
TfiI	GAWTC	8 cut(s)	17, 107, 409, 597, 797, 829, 1068, 1334
Tru1I	TTAA	2 cut(s)	1470, 1491
Tru9I	TTAA	2 cut(s)	1470, 1491
TscAI	CASTG	3 cut(s)	817, 967, 1344
TseFI	GTSAC	3 cut(s)	123, 628, 1018
TseI	GCWGC	6 cut(s)	287, 554, 863, 992, 1099, 1825
Tsp45I	GTSAC	3 cut(s)	123, 628, 1018
TspDTI	ATGAA	3 cut(s)	54, 104, 726
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	3 cut(s)	817, 967, 1344
VpaK11BI	GGWCC	2 cut(s)	245, 1536
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	1360
XbaI	TCTAGA	2 cut(s)	412, 1085
XceI	RCATGY	2 cut(s)	1554, 1674
XhoI	CTCGAG	1 cut(s)	1433
XmiI	GTMKAC	1 cut(s)	1773
XmnI	GAANNNNTTC	1 cut(s)	1360
XspI	CTAG	7 cut(s)	231, 254, 413, 536, 563, 972, 1086
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.