Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005602

Physical Location & Seq

Genomic Coordinates Reverse (-)

43182648 .. 43192636

Gene Structure 9989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGGGTTTGATTCGCAGTCGCCAGATGGTGCAAAACAATGGGGTGCTGCTGCTGCTCGTAATAGTCTGATTCGGAGGAAGCAGGTCGATTCCGTTCACCGCAAGGCTCATCATCAATTGGCCAAGGAGTTGACTGTTCCCCATCTCGTTGCGATTGGTGTGGGCTCAACAATCGGAGCGGGAGTGTATATTCTCGTTGGAACAGTTGCCAGAGAGCATTCTGGACCAGCCCTCACTGTTTCCTTTCTCATTGCCGGAATCGCCGCCGCCCTTTCGGCCTTTTGTTATGCCGAGCTTGCAAGTCGTTGCCCCTCTGCCGGAAGCGCCTATCACTACACCTACATATGCATTGGAGAAGGTGTTGCTTGGTTGGTTGGTTGGGCTTTGATTCTCGAATATACCATTGGTGGTTCGGCTGTTGCTCGTGGCATCTCCCCTAATCTGGCATTACTCTTTGGAGGAGCAGACAGTCTGCCTGTTTTTCTAGCCCGTCAATACATTCCTGCGCTTGATATTATGGTTGACCCATGCGCAGCCATTCTAGTATTTATTGTCACAGGGCTCCTGTGTGTGGGAATCAAGGAGAGTACAGTGGCACAAGGCATTGCGACGATAGCGAATGTATGTGCAATGTTATTTGTCATAGTTGCTGGTACTTATTTGGGATTTAAGACTGGCTGGTCTGGATATCAACTTCCTACTGGGTACTTCCCCTTTGGAGTGAATGGTATGCTTGCCGGGTCTGCAACTGTTTTCTTTGCTTACATTGGTTTTGATTCAGTTGCAAGCACTGCTGAAGAGGTGAAGAATCCCCAACGAGATTTACCACTGGGTATTGGTGCTGCACTATCTATATGCTGTGCATTGTATATGTTGGTTTCCATGGTCATTGTTGGTTTAGTGCCTTATCATGCAATGGATCCTGACACGCCCATCTCTACTGCATTTGCTAGCCATGGGATGCAATGGGCTGCCTATATCATTACTGTTGGAGCTGTTACTGCTCTCTGCTCGACATTGATGGGGTCTATTCTTCCGCAGCCGCGAATTCTGATGGCAATGTCTCGAGATGGATTGCTACCGCCATTTTTCTCGGAGATTAATAAAAGCACTCAGGTCCCTGTCAAGAGTACAATAGCAACTGGGATTGGTGCTGCAACCTTGGCATTCTTCATGGATGTTTCACAGTTAGCAGGAATGGTTAGTGTGGGTACACTTGTTGCATTCACTATGGTAGCAATATCTGTACTTATACTCAGATATGTCCCACCGGATGAGGTGCCTTTGCCTGCATCTCTGCAGGATTCCATTGATTCAGTGTCCTTGCGGCATGGTAGTAGTTCTCAAGATATCAGTGGGGATGATCCTAAGGGTAGTGTTGGGTCTTCCAAAGATATTTCTAAACCTCTACTTGACACAGTGGATATCTTGGTTGAACTTCCTCTGATTGAAAAGCAACTACCCCTTGTTAACTACACACTAAGTGAAGATAACAGGCGAAAAATTGCTGGCTGGACCATAATGTTCACATGTGTAGGGGTGTTTCTCCTGACATATTCAGCTTCAAGTCTGGGCCTCCCCAGCTTTCTTCGCTATGCAGTATGTGGAGTTGGTGGTATCCTTGTTCTATTTGGTCTGATTGTGCTTACTTGTATAGATCAAGATGATGCACGGCACAGCTTTGGGCACACAGGAGGTTTCATATGCCCATTTGTTCCATTGCTTCCAATCATCTGTATTCTCATCAACGTCTACTTACTCATCAATCTTGGAGGTGACACCTGGGCTCGTGTTACTGTATGGCTGATGATAGGAGTGTTGGTTTATGTATTTTATGGCCGAACACACAGCTCACTGCAAGATGCAGTTTACGTGCCAGCAGCCCATGCCAATGAAATTTTCCGCAGCTCAGAAAATTATGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

642

Amino Acids

67.94

Weight (kDa)

5.89

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	46 - 426	6.4e-51	Amino acid permease
AA_permease	PF00324	48 - 418	3.1e-38	Amino acid permease
AA_permease_C	PF13906	567 - 617	2.1e-21	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58030 AT5G36940
fragaria_vesca	FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560
malus_domestica	MD12G1010500.v1.1 MD14G1007600.v1.1
prunus_persica	Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1
pyrus_communis	pycom12g00820 pycom14g00610
rosa_chinensis	RchiOBHm_Chr3g0496211
rosa_laevigata	RLG00000022551
rosa_roxburghii	Rroxscaffold_6G00389450
rosa_rugosa	Rorug03G0280500
rosa_samantha	Rh3AG327600 Rh3BG363200 Rh3BG363600 Rh3CG360600 Rh3DG363600
rosa_wichuraiana	Rw3G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	679
Acc16I	TGCGCA	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	1279
AccBSI	CCGCTC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	1752
AccII	CGCG	1 cut(s)	1045
AciI	CCGC	9 cut(s)	100, 179, 264, 267, 1037, 1043, 1082, 1327, 1903
AclWI	GGATC	3 cut(s)	914, 927, 1358
AcoI	YGGCCR	2 cut(s)	120, 1837
AcsI	RAATTY	2 cut(s)	1047, 1896
AcuI	CTGAAG	1 cut(s)	816
AdeI	CACNNNGTG	1 cut(s)	1484
AfaI	GTAC	6 cut(s)	589, 655, 707, 1132, 1213, 1248
AfiI	CCNNNNNNNGG	3 cut(s)	317, 442, 571
AflIII	ACRYGT	1 cut(s)	1529
AgsI	TTSAA	3 cut(s)	1436, 1451, 1566
AjnI	CCWGG	1 cut(s)	1781
AjuI	GAANNNNNNNTTGG	4 cut(s)	387, 419, 1883, 1915
AluBI	AGCT	7 cut(s)	295, 995, 1562, 1584, 1680, 1851, 1908
AluI	AGCT	7 cut(s)	295, 995, 1562, 1584, 1680, 1851, 1908
Alw26I	GTCTC	1 cut(s)	1068
AlwI	GGATC	3 cut(s)	914, 927, 1358
Ama87I	CYCGRG	1 cut(s)	1065
AoxI	GGCC	4 cut(s)	120, 276, 1573, 1837
ApoI	RAATTY	2 cut(s)	1047, 1896
AseI	ATTAAT	1 cut(s)	1101
AspLEI	GCGC	3 cut(s)	326, 508, 533
AspS9I	GGNCC	4 cut(s)	224, 1117, 1515, 1573
AsuC2I	CCSGG	1 cut(s)	739
AsuHPI	GGTGA	3 cut(s)	89, 814, 1787
AsuNHI	GCTAGC	1 cut(s)	950
AvaI	CYCGRG	1 cut(s)	1065
AvaII	GGWCC	3 cut(s)	224, 1117, 1515
AxyI	CCTNAGG	1 cut(s)	1368
BaeGI	GKGCMC	1 cut(s)	1689
BaeI	ACNNNNGTAYC	2 cut(s)	1203, 1236
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	1279
BanII	GRGCYC	3 cut(s)	167, 564, 1789
BauI	CACGAG	2 cut(s)	423, 1788
BbsI	GAAGAC	1 cut(s)	1377
BccI	CCATC	6 cut(s)	20, 150, 941, 1015, 1048, 1064
BceAI	ACGGC	1 cut(s)	1688
BciT130I	CCWGG	1 cut(s)	1783
BciVI	GTATCC	1 cut(s)	1628
BcnI	CCSGG	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	1068
BfaI	CTAG	3 cut(s)	485, 542, 951
BfmI	CTRYAG	1 cut(s)	1298
BfoI	RGCGCY	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	1628
BglI	GCCNNNNNGGC	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	739, 1783
Bme18I	GGWCC	3 cut(s)	224, 1117, 1515
BmeT110I	CYCGRG	1 cut(s)	1065
BmgT120I	GGNCC	4 cut(s)	224, 1117, 1515, 1573
BmiI	GGNNCC	4 cut(s)	563, 921, 1119, 1281
BmrFI	CCNGG	2 cut(s)	739, 1783
BmrI	ACTGGG	3 cut(s)	711, 839, 1152
BmsI	GCATC	5 cut(s)	438, 951, 1301, 1657, 1852
BmtI	GCTAGC	1 cut(s)	954
BmuI	ACTGGG	3 cut(s)	711, 839, 1152
BpiI	GAAGAC	1 cut(s)	1377
BpuEI	CTTGAG	1 cut(s)	1329
BpuMI	CCSGG	1 cut(s)	739
BsaAI	YACGTR	1 cut(s)	1873
BsaJI	CCNNGG	5 cut(s)	123, 882, 955, 1161, 1782
BsaWI	WCCGGW	1 cut(s)	1270
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 345, 375, 1806, 1836
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 442, 571
Bse1I	ACTGG	4 cut(s)	679, 706, 834, 1147
Bse21I	CCTNAGG	1 cut(s)	1368
Bse3DI	GCAATG	7 cut(s)	249, 603, 636, 921, 971, 1065, 1718
BseBI	CCWGG	1 cut(s)	1783
BseDI	CCNNGG	5 cut(s)	123, 882, 955, 1161, 1782
BseGI	GGATG	4 cut(s)	966, 1183, 1279, 1366
BseLI	CCNNNNNNNGG	3 cut(s)	317, 442, 571
BseMI	GCAATG	7 cut(s)	249, 603, 636, 921, 971, 1065, 1718
BseMII	CTCAG	3 cut(s)	1127, 1270, 1923
BseNI	ACTGG	4 cut(s)	679, 706, 834, 1147
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	1689
BseYI	CCCAGC	1 cut(s)	1580
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	1045
BshFI	GGCC	4 cut(s)	122, 278, 1575, 1839
BshNI	GGYRCC	1 cut(s)	1279
BsiHKCI	CYCGRG	1 cut(s)	1065
BsiSI	CCGG	4 cut(s)	255, 318, 738, 1271
BslFI	GGGAC	2 cut(s)	1103, 1250
BslI	CCNNNNNNNGG	3 cut(s)	317, 442, 571
BsmAI	GTCTC	1 cut(s)	1068
BsmFI	GGGAC	2 cut(s)	1103, 1250
BsmI	GAATGC	3 cut(s)	217, 1166, 1223
BsnI	GGCC	4 cut(s)	122, 278, 1575, 1839
BsoBI	CYCGRG	1 cut(s)	1065
Bsp1286I	GDGCHC	4 cut(s)	167, 564, 1689, 1789
Bsp143I	GATC	3 cut(s)	919, 1363, 1657
Bsp19I	CCATGG	2 cut(s)	882, 955
BspACI	CCGC	9 cut(s)	100, 179, 264, 267, 1037, 1043, 1082, 1327, 1903
BspANI	GGCC	4 cut(s)	122, 278, 1575, 1839
BspCNI	CTCAG	3 cut(s)	1126, 1269, 1922
BspFNI	CGCG	1 cut(s)	1045
BspLI	GGNNCC	4 cut(s)	563, 921, 1119, 1281
BspMAI	CTGCAG	1 cut(s)	1302
BspMI	ACCTGC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	954
BspPI	GGATC	3 cut(s)	914, 927, 1358
BspT107I	GGYRCC	1 cut(s)	1279
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	7 cut(s)	249, 603, 636, 921, 971, 1065, 1718
BsrI	ACTGG	4 cut(s)	679, 706, 834, 1147
BssECI	CCNNGG	5 cut(s)	123, 882, 955, 1161, 1782
BssMI	GATC	3 cut(s)	919, 1363, 1657
BssSI	CACGAG	2 cut(s)	423, 1788
BssT1I	CCWWGG	4 cut(s)	123, 882, 955, 1161
Bst2BI	CACGAG	2 cut(s)	423, 1788
Bst2UI	CCWGG	1 cut(s)	1783
Bst6I	CTCTTC	1 cut(s)	792
BstAPI	GCANNNNNTGC	2 cut(s)	791, 1886
BstBAI	YACGTR	1 cut(s)	1873
BstC8I	GCNNGC	7 cut(s)	297, 735, 787, 952, 1290, 1510, 1878
BstDEI	CTNAG	5 cut(s)	1113, 1256, 1368, 1481, 1909
BstDSI	CCRYGG	2 cut(s)	882, 955
BstF5I	GGATG	4 cut(s)	966, 1183, 1279, 1366
BstFNI	CGCG	1 cut(s)	1045
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	326, 508, 533
BstKTI	GATC	3 cut(s)	922, 1366, 1660
BstMAI	GTCTC	1 cut(s)	1068
BstMBI	GATC	3 cut(s)	919, 1363, 1657
BstNI	CCWGG	1 cut(s)	1783
BstNSI	RCATGY	1 cut(s)	1533
BstSCI	CCNGG	2 cut(s)	737, 1781
BstSFI	CTRYAG	1 cut(s)	1298
BstSLI	GKGCMC	1 cut(s)	1689
BstUI	CGCG	1 cut(s)	1045
BstV2I	GAAGAC	1 cut(s)	1377
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
Bsu36I	CCTNAGG	1 cut(s)	1368
BsuI	GTATCC	1 cut(s)	1628
BsuRI	GGCC	4 cut(s)	122, 278, 1575, 1839
BtgI	CCRYGG	2 cut(s)	882, 955
BtsCI	GGATG	4 cut(s)	966, 1183, 1279, 1366
BtsI	GCAGTG	2 cut(s)	789, 1853
BtsIMutI	CAGTG	8 cut(s)	234, 597, 789, 827, 1323, 1360, 1425, 1853
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	7 cut(s)	297, 735, 787, 952, 1290, 1510, 1878
CfoI	GCGC	3 cut(s)	326, 508, 533
Cfr13I	GGNCC	4 cut(s)	224, 1117, 1515, 1573
Csp6I	GTAC	6 cut(s)	588, 654, 706, 1131, 1212, 1247
CviAII	CATG	8 cut(s)	528, 883, 911, 956, 1174, 1331, 1530, 1886
CviQI	GTAC	6 cut(s)	588, 654, 706, 1131, 1212, 1247
DdeI	CTNAG	5 cut(s)	1113, 1256, 1368, 1481, 1909
DpnI	GATC	3 cut(s)	921, 1365, 1659
DpnII	GATC	3 cut(s)	919, 1363, 1657
DraIII	CACNNNGTG	1 cut(s)	1484
DrdI	GACNNNNNNGTC	1 cut(s)	679
DseDI	GACNNNNNNGTC	1 cut(s)	679
EaeI	YGGCCR	2 cut(s)	120, 1837
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	4 cut(s)	123, 882, 955, 1161
Eco24I	GRGCYC	3 cut(s)	167, 564, 1789
Eco32I	GATATC	3 cut(s)	689, 1351, 1426
Eco47I	GGWCC	3 cut(s)	224, 1117, 1515
Eco57I	CTGAAG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	1368
Eco88I	CYCGRG	1 cut(s)	1065
EcoO109I	RGGNCCY	1 cut(s)	1117
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	1781
EcoRV	GATATC	3 cut(s)	689, 1351, 1426
EcoT14I	CCWWGG	4 cut(s)	123, 882, 955, 1161
EcoT22I	ATGCAT	1 cut(s)	350
EcoT38I	GRGCYC	3 cut(s)	167, 564, 1789
ErhI	CCWWGG	4 cut(s)	123, 882, 955, 1161
FaeI	CATG	8 cut(s)	531, 886, 914, 959, 1177, 1334, 1533, 1889
FaqI	GGGAC	2 cut(s)	1103, 1250
FatI	CATG	8 cut(s)	527, 882, 910, 955, 1173, 1330, 1529, 1885
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	2 cut(s)	344, 1703
FblI	GTMKAC	1 cut(s)	1752
FokI	GGATG	4 cut(s)	973, 1190, 1286, 1373
FriOI	GRGCYC	3 cut(s)	167, 564, 1789
FspBI	CTAG	3 cut(s)	485, 542, 951
FspI	TGCGCA	1 cut(s)	532
GlaI	GCGC	3 cut(s)	325, 507, 532
GsaI	CCCAGC	1 cut(s)	1584
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	122, 278, 1575, 1839
HapII	CCGG	4 cut(s)	255, 318, 738, 1271
HhaI	GCGC	3 cut(s)	326, 508, 533
Hin1II	CATG	8 cut(s)	531, 886, 914, 959, 1177, 1334, 1533, 1889
Hin6I	GCGC	3 cut(s)	324, 506, 531
HinP1I	GCGC	3 cut(s)	324, 506, 531
HincII	GTYRAC	3 cut(s)	132, 523, 1471
HindII	GTYRAC	3 cut(s)	132, 523, 1471
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	4 cut(s)	255, 318, 738, 1271
HphI	GGTGA	3 cut(s)	89, 814, 1787
Hpy166II	GTNNAC	8 cut(s)	97, 132, 523, 1214, 1471, 1527, 1753, 1870
Hpy188I	TCNGA	9 cut(s)	69, 75, 176, 1053, 1096, 1259, 1446, 1638, 1912
Hpy8I	GTNNAC	8 cut(s)	97, 132, 523, 1214, 1471, 1527, 1753, 1870
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	1749, 1872
HpyF3I	CTNAG	5 cut(s)	1113, 1256, 1368, 1481, 1909
HpySE526I	ACGT	2 cut(s)	1749, 1872
Hsp92II	CATG	8 cut(s)	531, 886, 914, 959, 1177, 1334, 1533, 1889
HspAI	GCGC	3 cut(s)	324, 506, 531
KspAI	GTTAAC	1 cut(s)	1471
Kzo9I	GATC	3 cut(s)	919, 1363, 1657
LmnI	GCTCC	4 cut(s)	176, 461, 567, 992
LweI	GCATC	5 cut(s)	438, 951, 1301, 1657, 1852
MaeI	CTAG	3 cut(s)	485, 542, 951
MaeII	ACGT	2 cut(s)	1749, 1872
MaeIII	GTNAC	4 cut(s)	553, 997, 1775, 1792
MalI	GATC	3 cut(s)	921, 1365, 1659
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	3 cut(s)	919, 1363, 1657
MboII	GAAGA	7 cut(s)	809, 817, 1025, 1162, 1377, 1499, 1580
MfeI	CAATTG	1 cut(s)	116
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	4 cut(s)	167, 564, 1689, 1789
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	116, 1047, 1503, 1896, 1915
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	178, 970
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	4 cut(s)	669, 1101, 1470, 1927
MslI	CAYNNNNRTG	1 cut(s)	1890
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	4 cut(s)	255, 318, 738, 1271
MspR9I	CCNGG	2 cut(s)	739, 1783
MunI	CAATTG	1 cut(s)	116
Mva1269I	GAATGC	3 cut(s)	217, 1166, 1223
MvaI	CCWGG	1 cut(s)	1783
MvnI	CGCG	1 cut(s)	1045
NciI	CCSGG	1 cut(s)	739
NcoI	CCATGG	2 cut(s)	882, 955
NdeI	CATATG	2 cut(s)	344, 1703
NdeII	GATC	3 cut(s)	919, 1363, 1657
NheI	GCTAGC	1 cut(s)	950
NlaIII	CATG	8 cut(s)	531, 886, 914, 959, 1177, 1334, 1533, 1889
NlaIV	GGNNCC	4 cut(s)	563, 921, 1119, 1281
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	553, 1775
NsbI	TGCGCA	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	350
NspI	RCATGY	1 cut(s)	1533
PaeR7I	CTCGAG	1 cut(s)	1065
PciI	ACATGT	1 cut(s)	1529
PctI	GAATGC	3 cut(s)	217, 1166, 1223
Ppu21I	YACGTR	1 cut(s)	1873
PpuMI	RGGWCCY	1 cut(s)	1117
PscI	ACATGT	1 cut(s)	1529
PshBI	ATTAAT	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	1117
Psp6I	CCWGG	1 cut(s)	1781
PspFI	CCCAGC	1 cut(s)	1580
PspGI	CCWGG	1 cut(s)	1781
PspN4I	GGNNCC	4 cut(s)	563, 921, 1119, 1281
PspPI	GGNCC	4 cut(s)	224, 1117, 1515, 1573
PspPPI	RGGWCCY	1 cut(s)	1117
PstI	CTGCAG	1 cut(s)	1302
PsuI	RGATCY	1 cut(s)	919
RsaI	GTAC	6 cut(s)	589, 655, 707, 1132, 1213, 1248
RsaNI	GTAC	6 cut(s)	588, 654, 706, 1131, 1212, 1247
RseI	CAYNNNNRTG	1 cut(s)	1890
SaqAI	TTAA	4 cut(s)	669, 1101, 1470, 1927
Sau3AI	GATC	3 cut(s)	919, 1363, 1657
Sau96I	GGNCC	4 cut(s)	224, 1117, 1515, 1573
ScrFI	CCNGG	2 cut(s)	739, 1783
SduI	GDGCHC	4 cut(s)	167, 564, 1689, 1789
SfaNI	GCATC	5 cut(s)	438, 951, 1301, 1657, 1852
SfcI	CTRYAG	1 cut(s)	1298
Sfr274I	CTCGAG	1 cut(s)	1065
SinI	GGWCC	3 cut(s)	224, 1117, 1515
SlaI	CTCGAG	1 cut(s)	1065
SmiMI	CAYNNNNRTG	1 cut(s)	1890
SmlI	CTYRAG	2 cut(s)	1065, 1344
SmoI	CTYRAG	2 cut(s)	1065, 1344
Sse9I	AATT	5 cut(s)	116, 1047, 1503, 1896, 1915
SsiI	CCGC	9 cut(s)	100, 179, 264, 267, 1037, 1043, 1082, 1327, 1903
SspMI	CTAG	3 cut(s)	485, 542, 951
StyD4I	CCNGG	2 cut(s)	737, 1781
StyI	CCWWGG	4 cut(s)	123, 882, 955, 1161
TaiI	ACGT	2 cut(s)	1752, 1875
TaqI	TCGA	4 cut(s)	87, 393, 1013, 1066
TasI	AATT	5 cut(s)	116, 1047, 1503, 1896, 1915
TatI	WGTACW	3 cut(s)	587, 1130, 1246
TauI	GCSGC	4 cut(s)	266, 269, 1045, 1330
Tru1I	TTAA	4 cut(s)	669, 1101, 1470, 1927
Tru9I	TTAA	4 cut(s)	669, 1101, 1470, 1927
TscAI	CASTG	8 cut(s)	241, 597, 796, 834, 1323, 1360, 1425, 1860
TseFI	GTSAC	2 cut(s)	553, 1775
Tsp45I	GTSAC	2 cut(s)	553, 1775
TspDTI	ATGAA	3 cut(s)	1162, 1690, 1908
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	8 cut(s)	241, 597, 796, 834, 1323, 1360, 1425, 1860
VpaK11BI	GGWCC	3 cut(s)	224, 1117, 1515
VspI	ATTAAT	1 cut(s)	1101
XapI	RAATTY	2 cut(s)	1047, 1896
XceI	RCATGY	1 cut(s)	1533
XhoI	CTCGAG	1 cut(s)	1065
XmiI	GTMKAC	1 cut(s)	1752
XspI	CTAG	3 cut(s)	485, 542, 951
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.