Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005602

Physical Location & Seq

Genomic Coordinates Forward (+)

3010710 .. 3020546

Gene Structure 9837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGGGGTTTGATTCGCAGTCGCAGGATGGTGCAAAACAATTGGGTGGTGGTGCTCGTAATAGTCTGATTCGGAGGAAGCAGGTCGATTCCGTTCACCGCAAGGCTCATCATCAATTGGCCAAGGAGTTGACTGTTCCCCATCTCGTTGCAATTGGTGTGGGCTCAACAATCGGAGCAGGAGTGTATATTCTTGTTGGAACAGTTGCCAGAGAGCATTCTGGACCAGCCCTCACTGTTTCCTTTCTCATTGCCGGAATCGCCGCCGCCCTTTCGGCCTTTTGTTATGCCGAGCTTGCAAGTCGTTGTCCCTCCGCCGGAAGCGCCTATCACTACACCTACATATGCATTGGAGAAGGTGTTGCTTGGTTGGTTGGTTGGGCTTTGATTCTCGAATATACCATTGGCGGTTCAGCTGTTGCTCGTGGCATCTCCCCTAATCTGGCATTACTCTTTGGAGGAGCAGACAGCCTGCCTGTTTTTCTTGCCCGTCAATACATTCCTGCGCTTGATATTATGGTTGACCCATGCGCAGCCGTATTAGTATTTATTGTCACAGGGCTCCTGTGTGTGGGAATCAAGGAGAGTACAGTGGCACAAGGCATTGCGACGATAGCGAATGTATGTGCAATGTTATTTGTCATAGTTGCTGGTACTTATTTGGGATTTAAGACCGGCTGGTCTGGATATCAACTTCCTACTGGGTACTTCCCCTTTGGGGTGAATGGTATGCTTGCCGGGTCTGCAACTGTCTTCTTTGCTTACATTGGTTTTGATTCAGTTGCAAGCACTGCTGAAGAGGTGAAGAATCCCCAACGAGATTTACCACTGGGTATTGGTGCTGCACTATCTATATGCTGTGCATTGTATATGTTGGTTTCCATGGTCATTGTTGGTTTGGTGCCTTATCATGCAATGGATCCTGACACGCCCATCTCTACTGCATTTGCTAGCCATGGGATGCAATGGGCTGCCTATATCATTACTGTTGGAGCTGTTACTGCTCTCTGCTCGACATTGATGGGGTCTATTCTTCCGCAGCCGCGAATTCTGATGGCAATGGCTAGAGATGGATTGCTGCCGCCATTTTTCTCGGAGATTAATCAAAGCACTCAGGTCCCTGTCAAGAGTACAATAGCAACTGGGATTGGTGCTGCAACCTTGGCATTCTTCATGGATGTTTCACAGTTAGCAGGAATGGTTAGTGTGGGTACACTTGTTGCATTCACTATGGTAGCAATATCTGTACTTATACTCAGATATGTCCCACCGGATGAGGTGCCTTTGCCTGCATCTCTGCAGGATTCCATTGATTCAGTGTCCTTGCGGCATGGTAGTAATTCTCAAGATATCAGTGGGGATGATCCTAAGGGTAGTGTTGGGTCTTCCAAAGATAGTTCTAAACCTCTACTTGACAAAGTGGATATCTTGGTTGAACTTCCTCTGATTGAAAAGCAAGTACCCCTTGTCAACTACACACTAAGTGAAGATAACAGGCGAAAAATTGCTGGCTGGACCATAATGTTCACATGTGTAGGGGTGTTTCTCCTGACATATTCAGCTTCAAGTTTGGGCCTTCCCAGCTTTCTTCGCTATGCAGTATGTGGAGCTGGTGGTATCCTTGTTCTTTTTGGTCTGATTGTGCTTACTTGTATAGATCAAGATGATGCACGGCACAGCTTTGGGCACACAGGAGGTTTCATATGCCCATTTGTTCCATTGCTTCCAATCATCTGTATTCTCATCAACGTCTACTTACTCATCAATCTTGGAGGTGACACCTGGGCTCGTGTTACTGTATGGCTGATAATAGGAGTGTTGGTATATGTATTTTATGGCCGAACACACAGCTCACTGCAAGATGCAGTTTACGTGCCAGCAGCCCATGCCGATGAAATTTTCCGCAGCTCAGAAAATTATGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0008150 GO:0009705 GO:0012505 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0065007 GO:0065008 GO:0080144 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

641

Amino Acids

67.74

Weight (kDa)

5.79

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	45 - 425	8.5e-51	Amino acid permease
AA_permease	PF00324	47 - 417	4.4e-38	Amino acid permease
AA_permease_C	PF13906	566 - 616	1.7e-21	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58030 AT5G36940
fragaria_vesca	FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560 FvH4_1g28560
malus_domestica	MD12G1010500.v1.1 MD14G1007600.v1.1
prunus_persica	Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1 Prupe.7G012500_v2.0.a1
pyrus_communis	pycom12g00820 pycom14g00610
rosa_chinensis	RchiOBHm_Chr3g0496211
rosa_laevigata	RLG00000022551
rosa_roxburghii	Rroxscaffold_6G00389450
rosa_rugosa	Rorug03G0280500
rosa_samantha	Rh3AG327600 Rh3BG363200 Rh3BG363600 Rh3CG360600 Rh3DG363600
rosa_wichuraiana	Rw3G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	676
Acc16I	TGCGCA	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	2 cut(s)	898, 1276
AccI	GTMKAC	1 cut(s)	1749
AccII	CGCG	1 cut(s)	1042
AclWI	GGATC	3 cut(s)	911, 924, 1355
AcoI	YGGCCR	2 cut(s)	117, 1834
AcsI	RAATTY	2 cut(s)	1044, 1893
AcuI	CTGAAG	1 cut(s)	813
AdeI	CACNNNGTG	1 cut(s)	1481
AfaI	GTAC	7 cut(s)	586, 652, 704, 1129, 1210, 1245, 1458
AfiI	CCNNNNNNNGG	4 cut(s)	314, 439, 568, 715
AflIII	ACRYGT	1 cut(s)	1526
AgsI	TTSAA	3 cut(s)	1433, 1448, 1563
AjnI	CCWGG	1 cut(s)	1778
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	9 cut(s)	292, 413, 992, 1559, 1581, 1607, 1677, 1848, 1905
AluI	AGCT	9 cut(s)	292, 413, 992, 1559, 1581, 1607, 1677, 1848, 1905
Alw21I	GWGCWC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	911, 924, 1355
AoxI	GGCC	4 cut(s)	117, 273, 1570, 1834
ApeKI	GCWGC	8 cut(s)	530, 839, 968, 1036, 1075, 1151, 1877, 1902
ApoI	RAATTY	2 cut(s)	1044, 1893
AseI	ATTAAT	1 cut(s)	1098
AspLEI	GCGC	3 cut(s)	323, 505, 530
AspS9I	GGNCC	4 cut(s)	221, 1114, 1512, 1570
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	4 cut(s)	86, 730, 811, 1784
AsuNHI	GCTAGC	1 cut(s)	947
AvaII	GGWCC	3 cut(s)	221, 1114, 1512
AxyI	CCTNAGG	1 cut(s)	1365
BaeGI	GKGCMC	1 cut(s)	1686
BaeI	ACNNNNGTAYC	2 cut(s)	1200, 1233
BalI	TGGCCA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	898, 1276
BanII	GRGCYC	3 cut(s)	164, 561, 1786
BauI	CACGAG	2 cut(s)	420, 1785
BbsI	GAAGAC	2 cut(s)	742, 1374
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	8 cut(s)	542, 826, 955, 1048, 1062, 1138, 1889, 1914
BccI	CCATC	6 cut(s)	20, 147, 938, 1012, 1045, 1061
BceAI	ACGGC	2 cut(s)	518, 1685
BciT130I	CCWGG	1 cut(s)	1780
BciVI	GTATCC	1 cut(s)	1625
BcnI	CCSGG	1 cut(s)	736
BfaI	CTAG	2 cut(s)	948, 1062
BfmI	CTRYAG	1 cut(s)	1295
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	1625
BglI	GCCNNNNNGGC	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	736, 1780
Bme18I	GGWCC	3 cut(s)	221, 1114, 1512
BmgT120I	GGNCC	4 cut(s)	221, 1114, 1512, 1570
BmiI	GGNNCC	5 cut(s)	560, 900, 918, 1116, 1278
BmrFI	CCNGG	2 cut(s)	736, 1780
BmrI	ACTGGG	3 cut(s)	708, 836, 1149
BmsI	GCATC	5 cut(s)	435, 948, 1298, 1654, 1849
BmtI	GCTAGC	1 cut(s)	951
BmuI	ACTGGG	3 cut(s)	708, 836, 1149
BpiI	GAAGAC	2 cut(s)	742, 1374
BpuEI	CTTGAG	1 cut(s)	1326
BpuMI	CCSGG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	1870
BsaJI	CCNNGG	5 cut(s)	120, 879, 952, 1158, 1779
BsaWI	WCCGGW	1 cut(s)	1267
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 342, 372, 1803, 1833
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 439, 568, 715
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	3 cut(s)	703, 831, 1144
Bse21I	CCTNAGG	1 cut(s)	1365
Bse3DI	GCAATG	7 cut(s)	246, 600, 633, 918, 968, 1062, 1715
BseBI	CCWGG	1 cut(s)	1780
BseDI	CCNNGG	5 cut(s)	120, 879, 952, 1158, 1779
BseGI	GGATG	5 cut(s)	31, 963, 1180, 1276, 1363
BseLI	CCNNNNNNNGG	4 cut(s)	314, 439, 568, 715
BseMI	GCAATG	7 cut(s)	246, 600, 633, 918, 968, 1062, 1715
BseMII	CTCAG	3 cut(s)	1124, 1267, 1920
BseNI	ACTGG	3 cut(s)	703, 831, 1144
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	1686
BseXI	GCAGC	8 cut(s)	542, 826, 955, 1048, 1062, 1138, 1889, 1914
BseYI	CCCAGC	1 cut(s)	1577
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	1042
BshFI	GGCC	4 cut(s)	119, 275, 1572, 1836
BshNI	GGYRCC	2 cut(s)	898, 1276
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	5 cut(s)	252, 315, 672, 735, 1268
BslFI	GGGAC	3 cut(s)	291, 1100, 1247
BslI	CCNNNNNNNGG	4 cut(s)	314, 439, 568, 715
BsmFI	GGGAC	3 cut(s)	291, 1100, 1247
BsmI	GAATGC	3 cut(s)	214, 1163, 1220
BsnI	GGCC	4 cut(s)	119, 275, 1572, 1836
Bsp1286I	GDGCHC	5 cut(s)	55, 164, 561, 1686, 1786
Bsp143I	GATC	3 cut(s)	916, 1360, 1654
Bsp19I	CCATGG	2 cut(s)	879, 952
BspANI	GGCC	4 cut(s)	119, 275, 1572, 1836
BspCNI	CTCAG	3 cut(s)	1123, 1266, 1919
BspFNI	CGCG	1 cut(s)	1042
BspLI	GGNNCC	5 cut(s)	560, 900, 918, 1116, 1278
BspMAI	CTGCAG	1 cut(s)	1299
BspMI	ACCTGC	1 cut(s)	70
BspOI	GCTAGC	1 cut(s)	951
BspPI	GGATC	3 cut(s)	911, 924, 1355
BspT107I	GGYRCC	2 cut(s)	898, 1276
BsrDI	GCAATG	7 cut(s)	246, 600, 633, 918, 968, 1062, 1715
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	3 cut(s)	703, 831, 1144
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	5 cut(s)	120, 879, 952, 1158, 1779
BssMI	GATC	3 cut(s)	916, 1360, 1654
BssSI	CACGAG	2 cut(s)	420, 1785
BssT1I	CCWWGG	4 cut(s)	120, 879, 952, 1158
Bst2BI	CACGAG	2 cut(s)	420, 1785
Bst2UI	CCWGG	1 cut(s)	1780
Bst4CI	ACNGT	8 cut(s)	133, 202, 235, 589, 748, 985, 1185, 1795
Bst6I	CTCTTC	1 cut(s)	789
BstAPI	GCANNNNNTGC	2 cut(s)	788, 1883
BstBAI	YACGTR	1 cut(s)	1870
BstC8I	GCNNGC	8 cut(s)	294, 470, 732, 784, 949, 1287, 1507, 1875
BstDEI	CTNAG	5 cut(s)	1110, 1253, 1365, 1478, 1906
BstDSI	CCRYGG	2 cut(s)	879, 952
BstF5I	GGATG	5 cut(s)	31, 963, 1180, 1276, 1363
BstFNI	CGCG	1 cut(s)	1042
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	3 cut(s)	323, 505, 530
BstKTI	GATC	3 cut(s)	919, 1363, 1657
BstMBI	GATC	3 cut(s)	916, 1360, 1654
BstNI	CCWGG	1 cut(s)	1780
BstNSI	RCATGY	1 cut(s)	1530
BstSCI	CCNGG	2 cut(s)	734, 1778
BstSFI	CTRYAG	1 cut(s)	1295
BstSLI	GKGCMC	1 cut(s)	1686
BstUI	CGCG	1 cut(s)	1042
BstV1I	GCAGC	8 cut(s)	542, 826, 955, 1048, 1062, 1138, 1889, 1914
BstV2I	GAAGAC	2 cut(s)	742, 1374
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
Bsu36I	CCTNAGG	1 cut(s)	1365
BsuI	GTATCC	1 cut(s)	1625
BsuRI	GGCC	4 cut(s)	119, 275, 1572, 1836
BtgI	CCRYGG	2 cut(s)	879, 952
BtsCI	GGATG	5 cut(s)	31, 963, 1180, 1276, 1363
BtsI	GCAGTG	2 cut(s)	786, 1850
BtsIMutI	CAGTG	7 cut(s)	231, 594, 786, 824, 1320, 1357, 1850
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	8 cut(s)	294, 470, 732, 784, 949, 1287, 1507, 1875
CfoI	GCGC	3 cut(s)	323, 505, 530
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	4 cut(s)	221, 1114, 1512, 1570
Csp6I	GTAC	7 cut(s)	585, 651, 703, 1128, 1209, 1244, 1457
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	8 cut(s)	525, 880, 908, 953, 1171, 1328, 1527, 1883
CviQI	GTAC	7 cut(s)	585, 651, 703, 1128, 1209, 1244, 1457
DdeI	CTNAG	5 cut(s)	1110, 1253, 1365, 1478, 1906
DpnI	GATC	3 cut(s)	918, 1362, 1656
DpnII	GATC	3 cut(s)	916, 1360, 1654
DraIII	CACNNNGTG	1 cut(s)	1481
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	117, 1834
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	4 cut(s)	120, 879, 952, 1158
Eco24I	GRGCYC	3 cut(s)	164, 561, 1786
Eco32I	GATATC	3 cut(s)	686, 1348, 1423
Eco47I	GGWCC	3 cut(s)	221, 1114, 1512
Eco57I	CTGAAG	1 cut(s)	813
Eco81I	CCTNAGG	1 cut(s)	1365
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRI	GAATTC	1 cut(s)	1044
EcoRII	CCWGG	1 cut(s)	1778
EcoRV	GATATC	3 cut(s)	686, 1348, 1423
EcoT14I	CCWWGG	4 cut(s)	120, 879, 952, 1158
EcoT22I	ATGCAT	1 cut(s)	347
EcoT38I	GRGCYC	3 cut(s)	164, 561, 1786
ErhI	CCWWGG	4 cut(s)	120, 879, 952, 1158
FaeI	CATG	8 cut(s)	528, 883, 911, 956, 1174, 1331, 1530, 1886
FalI	AAGNNNNNCTT	2 cut(s)	1446, 1478
FaqI	GGGAC	3 cut(s)	291, 1100, 1247
FatI	CATG	8 cut(s)	524, 879, 907, 952, 1170, 1327, 1526, 1882
FauNDI	CATATG	2 cut(s)	341, 1700
FblI	GTMKAC	1 cut(s)	1749
FokI	GGATG	5 cut(s)	38, 970, 1187, 1283, 1370
FriOI	GRGCYC	3 cut(s)	164, 561, 1786
FspBI	CTAG	2 cut(s)	948, 1062
FspI	TGCGCA	1 cut(s)	529
GlaI	GCGC	3 cut(s)	322, 504, 529
GsaI	CCCAGC	1 cut(s)	1581
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	119, 275, 1572, 1836
HapII	CCGG	5 cut(s)	252, 315, 672, 735, 1268
HhaI	GCGC	3 cut(s)	323, 505, 530
Hin1II	CATG	8 cut(s)	528, 883, 911, 956, 1174, 1331, 1530, 1886
Hin6I	GCGC	3 cut(s)	321, 503, 528
HinP1I	GCGC	3 cut(s)	321, 503, 528
HincII	GTYRAC	3 cut(s)	129, 520, 1468
HindII	GTYRAC	3 cut(s)	129, 520, 1468
HpaII	CCGG	5 cut(s)	252, 315, 672, 735, 1268
HphI	GGTGA	4 cut(s)	86, 730, 811, 1784
Hpy166II	GTNNAC	8 cut(s)	94, 129, 520, 1211, 1468, 1524, 1750, 1867
Hpy188I	TCNGA	9 cut(s)	66, 72, 173, 1050, 1093, 1256, 1443, 1635, 1909
Hpy188III	TCNNGA	8 cut(s)	219, 389, 681, 920, 1123, 1343, 1546, 1658
Hpy8I	GTNNAC	8 cut(s)	94, 129, 520, 1211, 1468, 1524, 1750, 1867
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	2 cut(s)	347, 1583
HpyCH4III	ACNGT	8 cut(s)	133, 202, 235, 589, 748, 985, 1185, 1795
HpyCH4IV	ACGT	2 cut(s)	1746, 1869
HpyF3I	CTNAG	5 cut(s)	1110, 1253, 1365, 1478, 1906
HpySE526I	ACGT	2 cut(s)	1746, 1869
Hsp92II	CATG	8 cut(s)	528, 883, 911, 956, 1174, 1331, 1530, 1886
HspAI	GCGC	3 cut(s)	321, 503, 528
Kzo9I	GATC	3 cut(s)	916, 1360, 1654
LmnI	GCTCC	5 cut(s)	173, 458, 564, 989, 1604
Lsp1109I	GCAGC	8 cut(s)	542, 826, 955, 1048, 1062, 1138, 1889, 1914
LweI	GCATC	5 cut(s)	435, 948, 1298, 1654, 1849
MaeI	CTAG	2 cut(s)	948, 1062
MaeII	ACGT	2 cut(s)	1746, 1869
MaeIII	GTNAC	4 cut(s)	550, 994, 1772, 1789
MalI	GATC	3 cut(s)	918, 1362, 1656
MboI	GATC	3 cut(s)	916, 1360, 1654
MboII	GAAGA	8 cut(s)	742, 806, 814, 1022, 1159, 1374, 1496, 1577
MfeI	CAATTG	3 cut(s)	38, 113, 150
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	5 cut(s)	55, 164, 561, 1686, 1786
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	8 cut(s)	38, 113, 150, 1044, 1336, 1500, 1893, 1912
MluNI	TGGCCA	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	175, 967
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	3 cut(s)	666, 1098, 1924
MslI	CAYNNNNRTG	1 cut(s)	1887
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	5 cut(s)	252, 315, 672, 735, 1268
MspR9I	CCNGG	2 cut(s)	736, 1780
MunI	CAATTG	3 cut(s)	38, 113, 150
Mva1269I	GAATGC	3 cut(s)	214, 1163, 1220
MvaI	CCWGG	1 cut(s)	1780
MvnI	CGCG	1 cut(s)	1042
NciI	CCSGG	1 cut(s)	736
NcoI	CCATGG	2 cut(s)	879, 952
NdeI	CATATG	2 cut(s)	341, 1700
NdeII	GATC	3 cut(s)	916, 1360, 1654
NheI	GCTAGC	1 cut(s)	947
NlaIII	CATG	8 cut(s)	528, 883, 911, 956, 1174, 1331, 1530, 1886
NlaIV	GGNNCC	5 cut(s)	560, 900, 918, 1116, 1278
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	550, 1772
NsbI	TGCGCA	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	347
NspI	RCATGY	1 cut(s)	1530
PciI	ACATGT	1 cut(s)	1526
PctI	GAATGC	3 cut(s)	214, 1163, 1220
Ppu21I	YACGTR	1 cut(s)	1870
PpuMI	RGGWCCY	1 cut(s)	1114
PscI	ACATGT	1 cut(s)	1526
PshBI	ATTAAT	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	1778
PspFI	CCCAGC	1 cut(s)	1577
PspGI	CCWGG	1 cut(s)	1778
PspN4I	GGNNCC	5 cut(s)	560, 900, 918, 1116, 1278
PspPI	GGNCC	4 cut(s)	221, 1114, 1512, 1570
PspPPI	RGGWCCY	1 cut(s)	1114
PstI	CTGCAG	1 cut(s)	1299
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	7 cut(s)	586, 652, 704, 1129, 1210, 1245, 1458
RsaNI	GTAC	7 cut(s)	585, 651, 703, 1128, 1209, 1244, 1457
RseI	CAYNNNNRTG	1 cut(s)	1887
SaqAI	TTAA	3 cut(s)	666, 1098, 1924
Sau3AI	GATC	3 cut(s)	916, 1360, 1654
Sau96I	GGNCC	4 cut(s)	221, 1114, 1512, 1570
ScrFI	CCNGG	2 cut(s)	736, 1780
SduI	GDGCHC	5 cut(s)	55, 164, 561, 1686, 1786
SfaNI	GCATC	5 cut(s)	435, 948, 1298, 1654, 1849
SfcI	CTRYAG	1 cut(s)	1295
SinI	GGWCC	3 cut(s)	221, 1114, 1512
SmiMI	CAYNNNNRTG	1 cut(s)	1887
SmlI	CTYRAG	1 cut(s)	1341
SmoI	CTYRAG	1 cut(s)	1341
Sse9I	AATT	8 cut(s)	38, 113, 150, 1044, 1336, 1500, 1893, 1912
SspMI	CTAG	2 cut(s)	948, 1062
StyD4I	CCNGG	2 cut(s)	734, 1778
StyI	CCWWGG	4 cut(s)	120, 879, 952, 1158
TaaI	ACNGT	8 cut(s)	133, 202, 235, 589, 748, 985, 1185, 1795
TaiI	ACGT	2 cut(s)	1749, 1872
TaqI	TCGA	3 cut(s)	84, 390, 1010
TasI	AATT	8 cut(s)	38, 113, 150, 1044, 1336, 1500, 1893, 1912
TatI	WGTACW	3 cut(s)	584, 1127, 1243
TauI	GCSGC	5 cut(s)	263, 266, 1042, 1081, 1327
Tru1I	TTAA	3 cut(s)	666, 1098, 1924
Tru9I	TTAA	3 cut(s)	666, 1098, 1924
TscAI	CASTG	7 cut(s)	238, 594, 793, 831, 1320, 1357, 1857
TseFI	GTSAC	2 cut(s)	550, 1772
TseI	GCWGC	8 cut(s)	530, 839, 968, 1036, 1075, 1151, 1877, 1902
Tsp45I	GTSAC	2 cut(s)	550, 1772
TspDTI	ATGAA	3 cut(s)	1159, 1687, 1905
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	7 cut(s)	238, 594, 793, 831, 1320, 1357, 1857
VpaK11BI	GGWCC	3 cut(s)	221, 1114, 1512
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	2 cut(s)	1044, 1893
XceI	RCATGY	1 cut(s)	1530
XmiI	GTMKAC	1 cut(s)	1749
XspI	CTAG	2 cut(s)	948, 1062
Zsp2I	ATGCAT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.