Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004828

Physical Location & Seq

Genomic Coordinates Reverse (-)

18355185 .. 18362038

Gene Structure 6854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1115000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGAGGTTGGGAGGCATTTTCTCTCTTCTTCCTCTGCCTTTCCTTCCACAACCCACCTCAGGCATCCTCTTCCTTCTTCTCCTTCTTCTTCTTCCTCCACCTCAGTGTTGATGCTTCACGAGCAAGCAACTCCTGCAGTTACTTCTGTGCCGATTACATTTGTAGCTCGACACTTTCCAACTTCGGTTCTTCTACAAGAGCAGCGCGATGAGTTCAAGCCTCTATTGCATGCACTGAAAGAAGAGAAAACATCTCAGGCTACGTTAGATAGGATGCAGATAGAGGCTAGGGCCTCTCTCAATGAAGATTTAAAGATTGATGGTTTCTACCAGTTGGTGAAGGACTCTGAGCACCAATTGCTTAACCGCTCTGGTCTTTTAGATGTATTTTCATCTTTACAAACAAGGGTAAAGTCGTCCGCACTTTTAACTATGGAGCCTATTACCACTGCTTCCAGTAAGCATATGGACATCAAGCCCTCTGACGCAGTTGCGCTGGCTAAGAAAGCTTTGTCAGCCTCAAAAGAAGCAGTCTCATTTGCTGAAGACTCCAAATCAATGGGAGATGATTTTGATGACTCTGTTTCTGAGGGTTTGGATAACTGGCTGGTTGAGGATGAGAAAACTGTAAGGTCAGCCCGACTTCTAGAGAGACGGCGCAGGCGACTGAAGAAAAAGAGGGTCTCTAAATCAAAAGTTCTAATTCATGAGACTAACGGTCCTACAAGTTCAGATGTGCGGAAAAAGATAAACGAAGGATTAAATCCAAATGATCCCCTGCGGTTGTTCTTGTGGGGTCCTGAAACAAAACAACTTTTGACTGCCAAGGAAGAGGCTGAACTGATTGCCCAAGTTCAGGATTTATTTAAGTTAGAAGAAGTGAAGAGTAGACTTCAATCACAGTTTGGTCGTGAACCAACTTTGGTTGAATGGGCTGAAGCTGTTGGAATTAGTTGTCAGATCTTGAAATCACAGCTTCGCTCTGGTACCAGCAGCCGTGAAAAGCTGATTTATGCTAACTTACGTATGGTGGTTCACATTGCTAAACAATATCAAGGACGAGGCCTTGGCCTTCAGGACTTAATGCAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAGAAGTTTAAACCTCAAGCTGGTTGCCGATTTGCTACTTATGCATACTGGTGGATAAGGCAAACAGTTAGGAAGGCCATATTTCAACATTCCAGGACCATCCGCTTGCCGGAAAATGTGTACACCCTCCTGGGCAAAGTCTTAGAGGCAAAGAAATCATGTATTCAGGAAGGAAATCACAACCCAAACAAAGAAGAACTAGCGAGACGAGTTGGAATTACAGTTGAAAAGTTGCAGAAGTTGCTATATTCTACAAGAATGCCACTTTCAATGCAACAACCTGTCTGGGCAGACCAAGACACCACTTTCCAGGAGATAACTGCTGACACTGGGACTGAGATCCCACATGTGAGTGTAGAAAAGCAGCTTATGAGGCAACATGTGCGCCACCTTCTAGGCATCCTCAACTTAAGAGAGAGACAGATTATCAGGTTAAGATTTGGCATTGAAGATGGCAAGCAGAGATCACTTTCAGAGATTGGCAACATGTTTGGATTGTCCAAGGAGCGGGTGCGGCAGTTGGAGAGCCGAGCATTCTTGAAGCTCAAGCAATCCCTTGGTAGCCAAGGCCTCGGGGCTTATGGTCCCTTACTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

573

Amino Acids

64.65

Weight (kDa)

9.57

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	337 - 405	2.1e-18	Sigma-70 region 2
Sigma70_r3	PF04539	416 - 485	3.8e-17	Sigma-70 region 3
Sigma70_r4	PF04545	505 - 557	3.4e-16	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36990
fragaria_vesca	FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180
malus_domestica	MD12G1115000.v1.1
prunus_persica	Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1
pyrus_communis	pycom04g09010 pycom12g11420
rosa_chinensis	RchiOBHm_Chr3g0470031
rosa_laevigata	RLG00000024302
rosa_multiflora	Rmu_co8112822.1_g000001 Rmu_co8234937.1_g000001 Rmu_sc0017440.1_g000004 Rmu_sc0032107.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411270
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106200
rosa_samantha	Rh3AG155500 Rh3BG179600 Rh3CG170200 Rh3DG195500
rosa_wichuraiana	Rw3G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	986
AccBSI	CCGCTC	2 cut(s)	369, 1627
AccI	GTMKAC	1 cut(s)	889
AccII	CGCG	1 cut(s)	207
AciI	CCGC	7 cut(s)	367, 420, 739, 781, 1222, 1627, 1633
AclWI	GGATC	2 cut(s)	767, 1453
AcuI	CTGAAG	4 cut(s)	564, 689, 957, 1058
AfaI	GTAC	2 cut(s)	988, 1241
AfiI	CCNNNNNNNGG	5 cut(s)	60, 856, 1139, 1228, 1626
AflII	CTTAAG	1 cut(s)	1528
AflIII	ACRYGT	3 cut(s)	1465, 1498, 1605
AgsI	TTSAA	9 cut(s)	217, 896, 929, 967, 1205, 1346, 1389, 1568, 1660
AhdI	GACNNNNNGTC	1 cut(s)	717
AjnI	CCWGG	3 cut(s)	1211, 1248, 1428
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	167, 509, 941, 976, 1006, 1139, 1486, 1663
AluI	AGCT	8 cut(s)	167, 509, 941, 976, 1006, 1139, 1486, 1663
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	6 cut(s)	538, 646, 688, 704, 1318, 1531
AlwI	GGATC	2 cut(s)	767, 1453
Ama87I	CYCGRG	1 cut(s)	1691
AoxI	GGCC	5 cut(s)	291, 1063, 1069, 1194, 1687
ApeKI	GCWGC	3 cut(s)	202, 993, 1483
Asp718I	GGTACC	1 cut(s)	986
AspLEI	GCGC	4 cut(s)	207, 496, 660, 1506
AspS9I	GGNCC	5 cut(s)	291, 719, 797, 1215, 1703
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	1691
AvaII	GGWCC	4 cut(s)	719, 797, 1215, 1703
AxyI	CCTNAGG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	986
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	214, 1005, 1495
BccI	CCATC	3 cut(s)	314, 1226, 1565
BceAI	ACGGC	2 cut(s)	671, 981
BciT130I	CCWGG	3 cut(s)	1213, 1250, 1430
BcoDI	GTCTC	6 cut(s)	538, 646, 688, 704, 1318, 1531
BfaI	CTAG	4 cut(s)	288, 647, 1319, 1514
BfmI	CTRYAG	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	1528
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	4 cut(s)	203, 994, 1484, 1634
BlsI	GCNGC	4 cut(s)	204, 995, 1485, 1635
Bme1390I	CCNGG	3 cut(s)	1213, 1250, 1430
Bme18I	GGWCC	4 cut(s)	719, 797, 1215, 1703
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmeT110I	CYCGRG	1 cut(s)	1691
BmgT120I	GGNCC	5 cut(s)	291, 719, 797, 1215, 1703
BmiI	GGNNCC	4 cut(s)	438, 798, 988, 1705
BmrFI	CCNGG	3 cut(s)	1213, 1250, 1430
BmrI	ACTGGG	1 cut(s)	1458
BmsI	GCATC	4 cut(s)	73, 102, 264, 1527
BmuI	ACTGGG	1 cut(s)	1458
BpiI	GAAGAC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	1119, 1649
BsaAI	YACGTR	1 cut(s)	1025
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	7 cut(s)	825, 1066, 1249, 1620, 1675, 1684, 1690
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 856, 1139, 1228, 1626
Bse1I	ACTGG	5 cut(s)	331, 456, 608, 1172, 1453
Bse21I	CCTNAGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	3 cut(s)	1213, 1250, 1430
BseDI	CCNNGG	7 cut(s)	825, 1066, 1249, 1620, 1675, 1684, 1690
BseGI	GGATG	5 cut(s)	64, 279, 622, 1218, 1518
BseLI	CCNNNNNNNGG	5 cut(s)	60, 856, 1139, 1228, 1626
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	6 cut(s)	73, 117, 269, 339, 579, 1446
BseNI	ACTGG	5 cut(s)	331, 456, 608, 1172, 1453
BseXI	GCAGC	3 cut(s)	214, 1005, 1495
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	5 cut(s)	293, 1065, 1071, 1196, 1689
BshNI	GGYRCC	1 cut(s)	986
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	1691
BsiSI	CCGG	1 cut(s)	1229
BslFI	GGGAC	2 cut(s)	1465, 1689
BslI	CCNNNNNNNGG	5 cut(s)	60, 856, 1139, 1228, 1626
BsmAI	GTCTC	6 cut(s)	538, 646, 688, 704, 1318, 1531
BsmBI	CGTCTC	2 cut(s)	646, 1318
BsmFI	GGGAC	2 cut(s)	1465, 1689
BsmI	GAATGC	2 cut(s)	1383, 1652
BsnI	GGCC	5 cut(s)	293, 1065, 1071, 1196, 1689
Bso31I	GGTCTC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	1691
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	1239
Bsp143I	GATC	4 cut(s)	772, 960, 1458, 1583
BspACI	CCGC	7 cut(s)	367, 420, 739, 781, 1222, 1627, 1633
BspANI	GGCC	5 cut(s)	293, 1065, 1071, 1196, 1689
BspCNI	CTCAG	6 cut(s)	72, 116, 268, 340, 580, 1447
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	438, 798, 988, 1705
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	767, 1453
BspT107I	GGYRCC	1 cut(s)	986
BspTI	CTTAAG	1 cut(s)	1528
BspTNI	GGTCTC	1 cut(s)	688
BsrBI	CCGCTC	2 cut(s)	369, 1627
BsrDI	GCAATG	1 cut(s)	1038
BsrGI	TGTACA	1 cut(s)	1239
BsrI	ACTGG	5 cut(s)	331, 456, 608, 1172, 1453
BssECI	CCNNGG	7 cut(s)	825, 1066, 1249, 1620, 1675, 1684, 1690
BssMI	GATC	4 cut(s)	772, 960, 1458, 1583
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	5 cut(s)	825, 1066, 1620, 1675, 1684
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	3 cut(s)	1213, 1250, 1430
Bst4CI	ACNGT	5 cut(s)	628, 719, 903, 1186, 1342
Bst6I	CTCTTC	6 cut(s)	31, 75, 237, 825, 878, 1106
BstAFI	CTTAAG	1 cut(s)	1528
BstAPI	GCANNNNNTGC	4 cut(s)	134, 358, 1360, 1501
BstAUI	TGTACA	1 cut(s)	1239
BstBAI	YACGTR	1 cut(s)	1025
BstC8I	GCNNGC	6 cut(s)	126, 231, 498, 662, 1226, 1577
BstDEI	CTNAG	8 cut(s)	59, 103, 255, 348, 501, 588, 1261, 1455
BstF5I	GGATG	5 cut(s)	64, 279, 622, 1218, 1518
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	4 cut(s)	207, 496, 660, 1506
BstKTI	GATC	4 cut(s)	775, 963, 1461, 1586
BstMAI	GTCTC	6 cut(s)	538, 646, 688, 704, 1318, 1531
BstMBI	GATC	4 cut(s)	772, 960, 1458, 1583
BstNI	CCWGG	3 cut(s)	1213, 1250, 1430
BstNSI	RCATGY	4 cut(s)	233, 1469, 1502, 1609
BstSCI	CCNGG	3 cut(s)	1211, 1248, 1428
BstSFI	CTRYAG	1 cut(s)	135
BstSNI	TACGTA	1 cut(s)	1025
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	214, 1005, 1495
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	960, 1458
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	2 cut(s)	960, 1458
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	5 cut(s)	293, 1065, 1071, 1196, 1689
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	5 cut(s)	64, 279, 622, 1218, 1518
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	4 cut(s)	111, 233, 447, 1446
Cac8I	GCNNGC	6 cut(s)	126, 231, 498, 662, 1226, 1577
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	4 cut(s)	207, 496, 660, 1506
Cfr13I	GGNCC	5 cut(s)	291, 719, 797, 1215, 1703
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	2 cut(s)	987, 1240
CviAII	CATG	6 cut(s)	230, 707, 1278, 1466, 1499, 1606
CviQI	GTAC	2 cut(s)	987, 1240
DdeI	CTNAG	8 cut(s)	59, 103, 255, 348, 501, 588, 1261, 1455
DpnI	GATC	4 cut(s)	774, 962, 1460, 1585
DpnII	GATC	4 cut(s)	772, 960, 1458, 1583
DraI	TTTAAA	2 cut(s)	312, 1129
DriI	GACNNNNNGTC	1 cut(s)	717
Eam1104I	CTCTTC	6 cut(s)	31, 75, 237, 825, 878, 1106
Eam1105I	GACNNNNNGTC	1 cut(s)	717
EarI	CTCTTC	6 cut(s)	31, 75, 237, 825, 878, 1106
Eco105I	TACGTA	1 cut(s)	1025
Eco130I	CCWWGG	5 cut(s)	825, 1066, 1620, 1675, 1684
Eco147I	AGGCCT	2 cut(s)	1065, 1689
Eco31I	GGTCTC	1 cut(s)	688
Eco47I	GGWCC	4 cut(s)	719, 797, 1215, 1703
Eco57I	CTGAAG	4 cut(s)	564, 689, 957, 1058
Eco81I	CCTNAGG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	1691
EcoO109I	RGGNCCY	2 cut(s)	291, 797
EcoRII	CCWGG	3 cut(s)	1211, 1248, 1428
EcoT14I	CCWWGG	5 cut(s)	825, 1066, 1620, 1675, 1684
EcoT22I	ATGCAT	1 cut(s)	1165
ErhI	CCWWGG	5 cut(s)	825, 1066, 1620, 1675, 1684
Esp3I	CGTCTC	2 cut(s)	646, 1318
FaeI	CATG	6 cut(s)	233, 710, 1281, 1469, 1502, 1609
FaqI	GGGAC	2 cut(s)	1465, 1689
FatI	CATG	6 cut(s)	229, 706, 1277, 1465, 1498, 1605
FauI	CCCGC	1 cut(s)	1620
FauNDI	CATATG	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	4 cut(s)	203, 994, 1484, 1634
FokI	GGATG	5 cut(s)	51, 286, 629, 1205, 1505
Fsp4HI	GCNGC	4 cut(s)	203, 994, 1484, 1634
FspBI	CTAG	4 cut(s)	288, 647, 1319, 1514
GlaI	GCGC	4 cut(s)	206, 495, 659, 1505
GluI	GCNGC	4 cut(s)	203, 994, 1484, 1634
HaeIII	GGCC	5 cut(s)	293, 1065, 1071, 1196, 1689
HapII	CCGG	1 cut(s)	1229
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	4 cut(s)	207, 496, 660, 1506
Hin1II	CATG	6 cut(s)	233, 710, 1281, 1469, 1502, 1609
Hin6I	GCGC	4 cut(s)	205, 494, 658, 1504
HinP1I	GCGC	4 cut(s)	205, 494, 658, 1504
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	3 cut(s)	344, 548, 578
HpaII	CCGG	1 cut(s)	1229
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	5 cut(s)	890, 914, 1036, 1240, 1242
Hpy188I	TCNGA	6 cut(s)	349, 484, 589, 733, 960, 1594
Hpy8I	GTNNAC	5 cut(s)	890, 914, 1036, 1240, 1242
HpyAV	CCTTC	9 cut(s)	54, 84, 93, 334, 749, 1082, 1186, 1283, 1520
HpyCH4III	ACNGT	5 cut(s)	628, 719, 903, 1186, 1342
HpyCH4IV	ACGT	2 cut(s)	263, 1024
HpyCH4V	TGCA	8 cut(s)	137, 229, 233, 277, 1087, 1163, 1354, 1393
HpyF3I	CTNAG	8 cut(s)	59, 103, 255, 348, 501, 588, 1261, 1455
HpySE526I	ACGT	2 cut(s)	263, 1024
Hsp92II	CATG	6 cut(s)	233, 710, 1281, 1469, 1502, 1609
HspAI	GCGC	4 cut(s)	205, 494, 658, 1504
KpnI	GGTACC	1 cut(s)	990
Kzo9I	GATC	4 cut(s)	772, 960, 1458, 1583
LmnI	GCTCC	2 cut(s)	436, 1624
Lsp1109I	GCAGC	3 cut(s)	214, 1005, 1495
LweI	GCATC	4 cut(s)	73, 102, 264, 1527
MaeI	CTAG	4 cut(s)	288, 647, 1319, 1514
MaeII	ACGT	2 cut(s)	263, 1024
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	774, 962, 1460, 1585
MbiI	CCGCTC	2 cut(s)	369, 1627
MboI	GATC	4 cut(s)	772, 960, 1458, 1583
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	2 cut(s)	960, 1458
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	356, 702, 948, 1335
MlyI	GAGTC	3 cut(s)	338, 542, 572
MmeI	TCCRAC	4 cut(s)	203, 925, 1312, 1620
Mph1103I	ATGCAT	1 cut(s)	1165
MseI	TTAA	9 cut(s)	311, 363, 428, 761, 867, 1082, 1128, 1529, 1553
MslI	CAYNNNNRTG	3 cut(s)	104, 1168, 1470
MspCI	CTTAAG	1 cut(s)	1528
MspI	CCGG	1 cut(s)	1229
MspR9I	CCNGG	3 cut(s)	1213, 1250, 1430
MssI	GTTTAAAC	1 cut(s)	1129
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	2 cut(s)	1383, 1652
MvaI	CCWGG	3 cut(s)	1213, 1250, 1430
MvnI	CGCG	1 cut(s)	207
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	4 cut(s)	772, 960, 1458, 1583
NlaIII	CATG	6 cut(s)	233, 710, 1281, 1469, 1502, 1609
NlaIV	GGNNCC	4 cut(s)	438, 798, 988, 1705
NmeAIII	GCCGAG	1 cut(s)	1673
NsiI	ATGCAT	1 cut(s)	1165
NspI	RCATGY	4 cut(s)	233, 1469, 1502, 1609
OliI	CACNNNNGTG	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	706
PceI	AGGCCT	2 cut(s)	1065, 1689
PciI	ACATGT	3 cut(s)	1465, 1498, 1605
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	2 cut(s)	1383, 1652
PfoI	TCCNGGA	2 cut(s)	1211, 1428
PkrI	GCNGC	4 cut(s)	204, 995, 1485, 1635
PleI	GAGTC	3 cut(s)	338, 542, 572
PmeI	GTTTAAAC	1 cut(s)	1129
PpsI	GAGTC	3 cut(s)	338, 542, 572
Ppu21I	YACGTR	1 cut(s)	1025
PpuMI	RGGWCCY	1 cut(s)	797
PscI	ACATGT	3 cut(s)	1465, 1498, 1605
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	3 cut(s)	1211, 1248, 1428
PspGI	CCWGG	3 cut(s)	1211, 1248, 1428
PspN4I	GGNNCC	4 cut(s)	438, 798, 988, 1705
PspPI	GGNCC	5 cut(s)	291, 719, 797, 1215, 1703
PspPPI	RGGWCCY	1 cut(s)	797
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	960, 1458
RsaI	GTAC	2 cut(s)	988, 1241
RsaNI	GTAC	2 cut(s)	987, 1240
RseI	CAYNNNNRTG	3 cut(s)	104, 1168, 1470
SaqAI	TTAA	9 cut(s)	311, 363, 428, 761, 867, 1082, 1128, 1529, 1553
SatI	GCNGC	4 cut(s)	203, 994, 1484, 1634
Sau3AI	GATC	4 cut(s)	772, 960, 1458, 1583
Sau96I	GGNCC	5 cut(s)	291, 719, 797, 1215, 1703
SchI	GAGTC	3 cut(s)	338, 542, 572
ScrFI	CCNGG	3 cut(s)	1213, 1250, 1430
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	4 cut(s)	73, 102, 264, 1527
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	4 cut(s)	719, 797, 1215, 1703
SmiMI	CAYNNNNRTG	3 cut(s)	104, 1168, 1470
SmlI	CTYRAG	3 cut(s)	1134, 1528, 1664
SmoI	CTYRAG	3 cut(s)	1134, 1528, 1664
SnaBI	TACGTA	1 cut(s)	1025
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	4 cut(s)	356, 702, 948, 1335
SseBI	AGGCCT	2 cut(s)	1065, 1689
SsiI	CCGC	7 cut(s)	367, 420, 739, 781, 1222, 1627, 1633
SspMI	CTAG	4 cut(s)	288, 647, 1319, 1514
StuI	AGGCCT	2 cut(s)	1065, 1689
StyD4I	CCNGG	3 cut(s)	1211, 1248, 1428
StyI	CCWWGG	5 cut(s)	825, 1066, 1620, 1675, 1684
TaaI	ACNGT	5 cut(s)	628, 719, 903, 1186, 1342
TaiI	ACGT	2 cut(s)	266, 1027
TaqI	TCGA	1 cut(s)	169
TasI	AATT	4 cut(s)	356, 702, 948, 1335
TatI	WGTACW	1 cut(s)	1239
TauI	GCSGC	1 cut(s)	1636
Tru1I	TTAA	9 cut(s)	311, 363, 428, 761, 867, 1082, 1128, 1529, 1553
Tru9I	TTAA	9 cut(s)	311, 363, 428, 761, 867, 1082, 1128, 1529, 1553
TscAI	CASTG	4 cut(s)	111, 240, 454, 1453
TseI	GCWGC	3 cut(s)	202, 993, 1483
TspDTI	ATGAA	4 cut(s)	318, 381, 695, 1124
TspRI	CASTG	4 cut(s)	111, 240, 454, 1453
Vha464I	CTTAAG	1 cut(s)	1528
VpaK11BI	GGWCC	4 cut(s)	719, 797, 1215, 1703
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	4 cut(s)	233, 1469, 1502, 1609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	889
XspI	CTAG	4 cut(s)	288, 647, 1319, 1514
Zsp2I	ATGCAT	1 cut(s)	1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.