Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004828

Physical Location & Seq

Genomic Coordinates Reverse (-)

11269637 .. 11271003

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTGAAATCACAGCTTCGCTCCGGTACTAGCAGCCGTAAAAAGCTTATTTATGCTAACTTACGTATGGTTGTTCACATTGCTAAACAGTATCAAGGACGAGGTCTTGGCCTTCAGGACTTAATGCGGGAGGGAAGTATGGGACTAATGAAGAGTGTCGAAAAGTTTAAACCTCAAGCTGGTTGCCGGTTTGCTACTTATGCGTATTGGTGGATAAGGCAAACGGTTAGGAAGGAGATATTTCAACATTCCAGGACTATCCGCTTGCCGGAAAATGTGTACACCCTCCTCGGCAAAGTACTAGAGGCAACGAAATCATGTATTCAGGAAGGAAATCACAACCCAAACAAAGAACTTGTGAGACGGGTTGGAATTACTGTTGAAAAGTTGCAGAAGTTGCTATTTTCTACAAGAATGCCGCTTTCAATGCAACAACCTGTCTGGGCAGACCAAGACACCACTTTCCAGGAGATTACTGCTCACACTGGGACCGAGATCCCACATGTGAGTGTAGAAAGGCAGCTTATGAGGCAACATGTACGCCACCTTCTAAGCATCCTCAACTTAAGAGAGGGGCAGATAATCAGGCTAAGATACGGCATTGAAGATGGCAAGCAGAGATCATTATCAGAGCTTGGCAACGTGTTTGGATTGTGCCAGGAGCAGGTGCGGCAGCTGGAGAGCCGAGCGTTCTTGAAGCTCAAGCAGTCCTTTGGTACCCAAGGCCTCGGGGCTTATGGTCCTTTGCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

252

Amino Acids

28.86

Weight (kDa)

10.18

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r2	PF04542	17 - 85	2.5e-17	Sigma-70 region 2
Sigma70_r3	PF04539	96 - 162	3.3e-11	Sigma-70 region 3
Sigma70_r4	PF04545	183 - 236	1.1e-11	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36990
fragaria_vesca	FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180
malus_domestica	MD12G1115000.v1.1
prunus_persica	Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1
pyrus_communis	pycom04g09010 pycom12g11420
rosa_chinensis	RchiOBHm_Chr3g0470031
rosa_laevigata	RLG00000024302
rosa_multiflora	Rmu_co8112822.1_g000001 Rmu_co8234937.1_g000001 Rmu_sc0017440.1_g000004 Rmu_sc0032107.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411270
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106200
rosa_samantha	Rh3AG155500 Rh3BG179600 Rh3CG170200 Rh3DG195500
rosa_wichuraiana	Rw3G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	655
Acc65I	GGTACC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	716
AciI	CCGC	4 cut(s)	127, 262, 419, 670
AclWI	GGATC	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	5 cut(s)	28, 281, 300, 540, 718
AfiI	CCNNNNNNNGG	3 cut(s)	179, 268, 664
AflII	CTTAAG	1 cut(s)	565
AflIII	ACRYGT	3 cut(s)	502, 535, 642
AgsI	TTSAA	6 cut(s)	7, 245, 383, 426, 605, 697
AjnI	CCWGG	3 cut(s)	251, 465, 657
AluBI	AGCT	7 cut(s)	16, 46, 179, 523, 634, 676, 700
AluI	AGCT	7 cut(s)	16, 46, 179, 523, 634, 676, 700
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	2 cut(s)	109, 724
ApeKI	GCWGC	3 cut(s)	33, 520, 673
Asp718I	GGTACC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	489, 740
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	2 cut(s)	489, 740
BanI	GGYRCC	1 cut(s)	716
BarI	GAAGNNNNNNTAC	2 cut(s)	531, 563
BbvI	GCAGC	3 cut(s)	45, 532, 685
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	2 cut(s)	21, 613
BciT130I	CCWGG	3 cut(s)	253, 467, 659
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	30, 302
BfrI	CTTAAG	1 cut(s)	565
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	34, 419, 521, 671, 674
BlsI	GCNGC	5 cut(s)	35, 420, 522, 672, 675
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	253, 467, 659
Bme18I	GGWCC	2 cut(s)	489, 740
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	2 cut(s)	489, 740
BmiI	GGNNCC	2 cut(s)	490, 718
BmrFI	CCNGG	3 cut(s)	253, 467, 659
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	698
BpuEI	CTTGAG	2 cut(s)	159, 686
BsaAI	YACGTR	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	289, 721, 727
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 268, 664
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	625
BseBI	CCWGG	3 cut(s)	253, 467, 659
BseDI	CCNNGG	3 cut(s)	289, 721, 727
BseGI	GGATG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	625
BseLI	CCNNNNNNNGG	3 cut(s)	179, 268, 664
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	45, 532, 685
BshFI	GGCC	2 cut(s)	111, 726
BshNI	GGYRCC	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	3 cut(s)	24, 187, 269
BslFI	GGGAC	2 cut(s)	156, 502
BslI	CCNNNNNNNGG	3 cut(s)	179, 268, 664
BsmAI	GTCTC	1 cut(s)	355
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	156, 502
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	111, 726
BsoBI	CYCGRG	1 cut(s)	728
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	495, 620
BspACI	CCGC	4 cut(s)	127, 262, 419, 670
BspANI	GGCC	2 cut(s)	111, 726
BspLI	GGNNCC	2 cut(s)	490, 718
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	289, 721, 727
BssMI	GATC	2 cut(s)	495, 620
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	3 cut(s)	253, 467, 659
Bst4CI	ACNGT	3 cut(s)	90, 226, 379
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	565
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstAUI	TGTACA	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	266, 614
BstDEI	CTNAG	2 cut(s)	551, 590
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	2 cut(s)	498, 623
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	495, 620
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 397, 427, 529, 670
BstNI	CCWGG	3 cut(s)	253, 467, 659
BstNSI	RCATGY	2 cut(s)	506, 539
BstSCI	CCNGG	3 cut(s)	251, 465, 657
BstSNI	TACGTA	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	45, 532, 685
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	111, 726
BtsCI	GGATG	1 cut(s)	555
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	2 cut(s)	266, 614
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	489, 740
Csp6I	GTAC	5 cut(s)	27, 280, 299, 539, 717
CviAII	CATG	3 cut(s)	318, 503, 536
CviQI	GTAC	5 cut(s)	27, 280, 299, 539, 717
DdeI	CTNAG	2 cut(s)	551, 590
DpnI	GATC	2 cut(s)	497, 622
DpnII	GATC	2 cut(s)	495, 620
DraI	TTTAAA	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco105I	TACGTA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	726
Eco47I	GGWCC	2 cut(s)	489, 740
Eco57I	CTGAAG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	251, 465, 657
EcoT14I	CCWWGG	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	721
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	3 cut(s)	321, 506, 539
FaiI	YATR	9 cut(s)	54, 68, 140, 201, 319, 504, 527, 537, 738
FalI	AAGNNNNNCTT	2 cut(s)	695, 727
FaqI	GGGAC	2 cut(s)	156, 502
FatI	CATG	3 cut(s)	317, 502, 535
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	34, 419, 521, 671, 674
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	5 cut(s)	34, 419, 521, 671, 674
FspBI	CTAG	2 cut(s)	30, 302
GluI	GCNGC	5 cut(s)	34, 419, 521, 671, 674
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	111, 726
HapII	CCGG	3 cut(s)	24, 187, 269
Hin1II	CATG	3 cut(s)	321, 506, 539
HindIII	AAGCTT	1 cut(s)	44
HpaII	CCGG	3 cut(s)	24, 187, 269
Hpy166II	GTNNAC	3 cut(s)	76, 280, 282
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	3 cut(s)	116, 326, 694
Hpy8I	GTNNAC	3 cut(s)	76, 280, 282
HpyAV	CCTTC	4 cut(s)	122, 226, 323, 557
HpyCH4III	ACNGT	3 cut(s)	90, 226, 379
HpyCH4IV	ACGT	2 cut(s)	64, 642
HpyCH4V	TGCA	2 cut(s)	391, 430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 397, 427, 529, 670
HpyF3I	CTNAG	2 cut(s)	551, 590
HpySE526I	ACGT	2 cut(s)	64, 642
Hsp92II	CATG	3 cut(s)	321, 506, 539
KpnI	GGTACC	1 cut(s)	720
Kzo9I	GATC	2 cut(s)	495, 620
LmnI	GCTCC	2 cut(s)	26, 661
Lsp1109I	GCAGC	3 cut(s)	45, 532, 685
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	30, 302
MaeII	ACGT	2 cut(s)	64, 642
MalI	GATC	2 cut(s)	497, 622
MboI	GATC	2 cut(s)	495, 620
MboII	GAAGA	2 cut(s)	163, 617
MflI	RGATCY	1 cut(s)	495
MluCI	AATT	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	349
MseI	TTAA	3 cut(s)	122, 168, 566
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	676
MspCI	CTTAAG	1 cut(s)	565
MspI	CCGG	3 cut(s)	24, 187, 269
MspR9I	CCNGG	3 cut(s)	253, 467, 659
MssI	GTTTAAAC	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	3 cut(s)	253, 467, 659
MwoI	GCNNNNNNNGC	5 cut(s)	200, 397, 427, 529, 670
NdeII	GATC	2 cut(s)	495, 620
NlaIII	CATG	3 cut(s)	321, 506, 539
NlaIV	GGNNCC	2 cut(s)	490, 718
NmeAIII	GCCGAG	2 cut(s)	270, 710
NspI	RCATGY	2 cut(s)	506, 539
PaqCI	CACCTGC	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	726
PciI	ACATGT	2 cut(s)	502, 535
PctI	GAATGC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	102
PfoI	TCCNGGA	2 cut(s)	251, 465
PkrI	GCNGC	5 cut(s)	35, 420, 522, 672, 675
PmeI	GTTTAAAC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	2 cut(s)	502, 535
Psp6I	CCWGG	3 cut(s)	251, 465, 657
PspGI	CCWGG	3 cut(s)	251, 465, 657
PspN4I	GGNNCC	2 cut(s)	490, 718
PspPI	GGNCC	2 cut(s)	489, 740
PsuI	RGATCY	1 cut(s)	495
PsyI	GACNNNGTC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	5 cut(s)	28, 281, 300, 540, 718
RsaNI	GTAC	5 cut(s)	27, 280, 299, 539, 717
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	122, 168, 566
SatI	GCNGC	5 cut(s)	34, 419, 521, 671, 674
Sau3AI	GATC	2 cut(s)	495, 620
Sau96I	GGNCC	2 cut(s)	489, 740
ScaI	AGTACT	1 cut(s)	300
ScrFI	CCNGG	3 cut(s)	253, 467, 659
SfaNI	GCATC	1 cut(s)	564
SinI	GGWCC	2 cut(s)	489, 740
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	3 cut(s)	174, 565, 701
SmoI	CTYRAG	3 cut(s)	174, 565, 701
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	1 cut(s)	372
SseBI	AGGCCT	1 cut(s)	726
SsiI	CCGC	4 cut(s)	127, 262, 419, 670
SspMI	CTAG	2 cut(s)	30, 302
StuI	AGGCCT	1 cut(s)	726
StyD4I	CCNGG	3 cut(s)	251, 465, 657
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	3 cut(s)	90, 226, 379
TaiI	ACGT	2 cut(s)	67, 645
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	372
TatI	WGTACW	2 cut(s)	279, 298
TauI	GCSGC	2 cut(s)	421, 673
Tru1I	TTAA	3 cut(s)	122, 168, 566
Tru9I	TTAA	3 cut(s)	122, 168, 566
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	3 cut(s)	33, 520, 673
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	490
Tth111I	GACNNNGTC	1 cut(s)	102
Vha464I	CTTAAG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	489, 740
XceI	RCATGY	2 cut(s)	506, 539
XspI	CTAG	2 cut(s)	30, 302
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.