Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8112822.1

Orthogroup ID

OG0004828

Physical Location & Seq

Genomic Coordinates Forward (+)

91 .. 599

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8112822.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atgcttcatgagcaagcagctcctgcacttacttctctgccgactacatttataactcgacattttcctacttcagttcttatacaagagcagcgcgatgagttcaagcctctattgcacatatttaaggaagagaaaccatctcaggccacattagatcggatgcagatagagaataccactgctgaggaagatttcaacattgatgacttttacaagttggtcaaagactttcgccagttgcatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

83

Amino Acids

9.8

Weight (kDa)

5.21

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36990
fragaria_vesca	FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180
malus_domestica	MD12G1115000.v1.1
prunus_persica	Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1
pyrus_communis	pycom04g09010 pycom12g11420
rosa_chinensis	RchiOBHm_Chr3g0470031
rosa_laevigata	RLG00000024302
rosa_multiflora	Rmu_co8112822.1_g000001 Rmu_co8234937.1_g000001 Rmu_sc0017440.1_g000004 Rmu_sc0032107.1_g000001
rosa_roxburghii	Rroxscaffold_6G00411270
rosa_rugosa	Rorug03G0106100 Rorug03G0106100 Rorug03G0106200
rosa_samantha	Rh3AG155500 Rh3BG179600 Rh3CG170200 Rh3DG195500
rosa_wichuraiana	Rw3G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccII	CGCG	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	106, 199
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	17, 91
AspLEI	GCGC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	29, 103
BccI	CCATC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	18, 92
BlsI	GCNGC	2 cut(s)	19, 93
BmsI	GCATC	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	158, 177
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	29, 103
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	157, 178
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	144, 186
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 23, 115
BstNSI	RCATGY	1 cut(s)	248
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	29, 103
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	15
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	7
CfoI	GCGC	1 cut(s)	96
CviAII	CATG	2 cut(s)	8, 245
CviJI	RGCY	3 cut(s)	20, 109, 149
CviKI_1	RGCY	3 cut(s)	20, 109, 149
DdeI	CTNAG	2 cut(s)	144, 186
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	57
FaeI	CATG	2 cut(s)	11, 248
FaiI	YATR	5 cut(s)	9, 53, 83, 122, 246
FatI	CATG	2 cut(s)	7, 244
Fnu4HI	GCNGC	2 cut(s)	18, 92
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	18, 92
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	2 cut(s)	18, 92
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	11, 248
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	26, 118, 166, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 23, 115
HpyF3I	CTNAG	2 cut(s)	144, 186
Hsp92II	CATG	2 cut(s)	11, 248
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	36, 131
Lsp1109I	GCAGC	2 cut(s)	29, 103
LweI	GCATC	1 cut(s)	153
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	143, 203
MnlI	CCTC	2 cut(s)	120, 181
MseI	TTAA	1 cut(s)	126
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	10, 23, 115
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	11, 248
NspI	RCATGY	1 cut(s)	248
PagI	TCATGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	19, 93
PsiI	TTATAA	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	18, 92
Sau3AI	GATC	1 cut(s)	157
SetI	ASST	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	153
SgeI	CNNG	9 cut(s)	20, 26, 35, 69, 98, 107, 118, 158, 229
TaqI	TCGA	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	17, 91
TspRI	CASTG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.