Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36990 |
| fragaria_vesca | FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 FvH4_6g16180 |
| malus_domestica | MD12G1115000.v1.1 |
| prunus_persica | Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 Prupe.6G234100_v2.0.a1 |
| pyrus_communis | pycom04g09010 pycom12g11420 |
| rosa_chinensis | RchiOBHm_Chr3g0470031 |
| rosa_laevigata | RLG00000024302 |
| rosa_multiflora | Rmu_co8112822.1_g000001 Rmu_co8234937.1_g000001 Rmu_sc0017440.1_g000004 Rmu_sc0032107.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00411270 |
| rosa_rugosa | Rorug03G0106100 Rorug03G0106100 Rorug03G0106200 |
| rosa_samantha | Rh3AG155500 Rh3BG179600 Rh3CG170200 Rh3DG195500 |
| rosa_wichuraiana | Rw3G014640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 158 |
| AccII | CGCG | 1 cut(s) | 201 |
| AcuI | CTGAAG | 3 cut(s) | 18, 81, 162 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 60 |
| AgsI | TTSAA | 2 cut(s) | 211, 304 |
| AluBI | AGCT | 1 cut(s) | 125 |
| AluI | AGCT | 1 cut(s) | 125 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 128 |
| AoxI | GGCC | 1 cut(s) | 252 |
| ApeKI | GCWGC | 2 cut(s) | 122, 196 |
| AspLEI | GCGC | 1 cut(s) | 201 |
| BbvCI | CCTCAGC | 1 cut(s) | 291 |
| BbvI | GCAGC | 2 cut(s) | 134, 208 |
| BccI | CCATC | 2 cut(s) | 52, 253 |
| BisI | GCNGC | 2 cut(s) | 123, 197 |
| BlsI | GCNGC | 2 cut(s) | 124, 198 |
| BmsI | GCATC | 3 cut(s) | 73, 96, 258 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 60 |
| Bse1I | ACTGG | 1 cut(s) | 343 |
| BseGI | GGATG | 2 cut(s) | 64, 273 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 60 |
| BseMII | CTCAG | 3 cut(s) | 73, 263, 282 |
| BseNI | ACTGG | 1 cut(s) | 343 |
| BseRI | GAGGAG | 1 cut(s) | 66 |
| BseXI | GCAGC | 2 cut(s) | 134, 208 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| Bsh1236I | CGCG | 1 cut(s) | 201 |
| BshFI | GGCC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 60 |
| BsnI | GGCC | 1 cut(s) | 254 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspANI | GGCC | 1 cut(s) | 254 |
| BspCNI | CTCAG | 3 cut(s) | 72, 262, 283 |
| BspFNI | CGCG | 1 cut(s) | 201 |
| BspHI | TCATGA | 1 cut(s) | 112 |
| BsrI | ACTGG | 1 cut(s) | 343 |
| BssMI | GATC | 1 cut(s) | 262 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 231 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 3 cut(s) | 59, 249, 291 |
| BstF5I | GGATG | 2 cut(s) | 64, 273 |
| BstFNI | CGCG | 1 cut(s) | 201 |
| BstHHI | GCGC | 1 cut(s) | 201 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 115, 128, 220 |
| BstNSI | RCATGY | 1 cut(s) | 353 |
| BstUI | CGCG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 2 cut(s) | 134, 208 |
| BsuRI | GGCC | 1 cut(s) | 254 |
| BtgZI | GCGATG | 1 cut(s) | 216 |
| BtsCI | GGATG | 2 cut(s) | 64, 273 |
| BtsI | GCAGTG | 1 cut(s) | 285 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| Cac8I | GCNNGC | 1 cut(s) | 120 |
| CaiI | CAGNNNCTG | 1 cut(s) | 128 |
| CciI | TCATGA | 1 cut(s) | 112 |
| CfoI | GCGC | 1 cut(s) | 201 |
| CviAII | CATG | 2 cut(s) | 113, 350 |
| CviJI | RGCY | 4 cut(s) | 8, 125, 214, 254 |
| CviKI_1 | RGCY | 4 cut(s) | 8, 125, 214, 254 |
| DdeI | CTNAG | 3 cut(s) | 59, 249, 291 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 231 |
| EarI | CTCTTC | 2 cut(s) | 75, 231 |
| Eco57I | CTGAAG | 3 cut(s) | 18, 81, 162 |
| FaeI | CATG | 2 cut(s) | 116, 353 |
| FaiI | YATR | 5 cut(s) | 114, 158, 188, 227, 351 |
| FatI | CATG | 2 cut(s) | 112, 349 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 197 |
| FokI | GGATG | 2 cut(s) | 51, 280 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 197 |
| GlaI | GCGC | 1 cut(s) | 200 |
| GluI | GCNGC | 2 cut(s) | 123, 197 |
| HaeIII | GGCC | 1 cut(s) | 254 |
| HhaI | GCGC | 1 cut(s) | 201 |
| Hin1II | CATG | 2 cut(s) | 116, 353 |
| Hin6I | GCGC | 1 cut(s) | 199 |
| HinP1I | GCGC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 1 cut(s) | 267 |
| Hpy188III | TCNNGA | 2 cut(s) | 103, 113 |
| HpyAV | CCTTC | 3 cut(s) | 6, 90, 96 |
| HpyCH4V | TGCA | 4 cut(s) | 131, 223, 271, 349 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 115, 128, 220 |
| HpyF3I | CTNAG | 3 cut(s) | 59, 249, 291 |
| Hsp92II | CATG | 2 cut(s) | 116, 353 |
| HspAI | GCGC | 1 cut(s) | 199 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LmnI | GCTCC | 1 cut(s) | 130 |
| LpnPI | CCDG | 3 cut(s) | 46, 141, 236 |
| Lsp1109I | GCAGC | 2 cut(s) | 134, 208 |
| LweI | GCATC | 3 cut(s) | 73, 96, 258 |
| MalI | GATC | 1 cut(s) | 264 |
| MboI | GATC | 1 cut(s) | 262 |
| MboII | GAAGA | 5 cut(s) | 18, 24, 62, 248, 308 |
| MnlI | CCTC | 5 cut(s) | 78, 84, 87, 225, 286 |
| MseI | TTAA | 1 cut(s) | 231 |
| MvnI | CGCG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 115, 128, 220 |
| NdeII | GATC | 1 cut(s) | 262 |
| NlaIII | CATG | 2 cut(s) | 116, 353 |
| NspI | RCATGY | 1 cut(s) | 353 |
| PagI | TCATGA | 1 cut(s) | 112 |
| PkrI | GCNGC | 2 cut(s) | 124, 198 |
| PsiI | TTATAA | 1 cut(s) | 158 |
| PstNI | CAGNNNCTG | 1 cut(s) | 128 |
| SaqAI | TTAA | 1 cut(s) | 231 |
| SatI | GCNGC | 2 cut(s) | 123, 197 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| SetI | ASST | 1 cut(s) | 127 |
| SfaNI | GCATC | 3 cut(s) | 73, 96, 258 |
| TaqI | TCGA | 1 cut(s) | 163 |
| Tru1I | TTAA | 1 cut(s) | 231 |
| Tru9I | TTAA | 1 cut(s) | 231 |
| TscAI | CASTG | 1 cut(s) | 292 |
| TseI | GCWGC | 2 cut(s) | 122, 196 |
| TspDTI | ATGAA | 2 cut(s) | 18, 101 |
| TspRI | CASTG | 1 cut(s) | 292 |
| XceI | RCATGY | 1 cut(s) | 353 |