Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003101

Physical Location & Seq

Genomic Coordinates Reverse (-)

21807175 .. 21807594

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1140200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGTTTATCGCACAAGTAGAGCAGAACCTTGGAGGTGTTTGGGAGGAACTAAGGCAACAAATGAATGTTGATCTAGAGCTGCTAAAGGGTTGCCTTGAGGAGGCATCTTTGATCAAGTCCCTGCCGGTATCCGAGACAATGTCGGAAAGTGACAGTGAATTAGGCAAACCACAAAGGGGATTTGCGACTTTGGATTGTACTGATGAAAAAGAGGTTGAGACTATTGTGAGTAGCTTTCTTCAACATTTGCAGGAAGTGGCTGACAAGGTACATACTAGTGACAGTGAAGAGAAACATAAGAGCCAAATGGTTCTTTGTTTGACTAGCCTGAGATTCTGCATTCCAAGCGTGATGAGAGAAACAATGGAGATGAAGAAAGAAGTGAGAAAACTAGTCAAATTGAACTCGCCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC FUSC_2

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

4.86

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09450
fragaria_vesca	FvH4_6g14110 FvH4_6g14110 FvH4_6g14240
malus_domestica	MD04G1122800.v1.1 MD04G1123800.v1.1 MD04G1125300.v1.1 MD12G1139000.v1.1 MD12G1140100.v1.1 MD12G1140200.v1.1 MD12G1140300.v1.1
prunus_persica	Prupe.6G250900_v2.0.a1 Prupe.6G250900_v2.0.a1 Prupe.6G250900_v2.0.a1 Prupe.6G252300_v2.0.a1
pyrus_communis	pycom04g11100 pycom04g11170 pycom12g13330
rosa_chinensis	RchiOBHm_Chr3g0467011 RchiOBHm_Chr3g0467201
rosa_laevigata	RLG00000024520 RLG00000024536
rosa_multiflora	Rmu_sc0001193.1_g000008
rosa_roxburghii	Rroxscaffold_6G00413830 Rroxscaffold_6G00414010
rosa_rugosa	Rorug03G0084800 Rorug03G0085700
rosa_samantha	Rh3AG132700 Rh3AG134100 Rh3BG153700 Rh3BG155400 Rh3CG153700 Rh3CG155000 Rh3DG154800 Rh3DG156200
rosa_wichuraiana	Rw3G012570 Rw3G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	202, 273
AfiI	CCNNNNNNNGG	2 cut(s)	103, 179
AgsI	TTSAA	2 cut(s)	245, 406
AhlI	ACTAGT	2 cut(s)	278, 394
AluBI	AGCT	2 cut(s)	82, 237
AluI	AGCT	2 cut(s)	82, 237
Alw26I	GTCTC	2 cut(s)	131, 215
ApeKI	GCWGC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	131, 215
BcuI	ACTAGT	2 cut(s)	278, 394
BfaI	CTAG	4 cut(s)	77, 279, 327, 395
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 179
Bse118I	RCCGGY	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	103, 179
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	103, 179
BsmAI	GTCTC	2 cut(s)	131, 215
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	73, 114
BspCNI	CTCAG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	73, 114
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	158, 287
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	53, 332
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	76, 117
BstMAI	GTCTC	2 cut(s)	131, 215
BstMBI	GATC	2 cut(s)	73, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	163, 292
Cfr10I	RCCGGY	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	201, 272
CviJI	RGCY	5 cut(s)	82, 237, 263, 306, 330
CviKI_1	RGCY	5 cut(s)	82, 237, 263, 306, 330
CviQI	GTAC	2 cut(s)	201, 272
DdeI	CTNAG	2 cut(s)	53, 332
DpnI	GATC	2 cut(s)	75, 116
DpnII	GATC	2 cut(s)	73, 114
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	3 cut(s)	276, 300, 418
FaqI	GGGAC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	4 cut(s)	77, 279, 327, 395
GluI	GCNGC	1 cut(s)	83
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	136, 148
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	158, 287
HpyCH4V	TGCA	2 cut(s)	253, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	2 cut(s)	53, 332
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	73, 114
LpnPI	CCDG	4 cut(s)	137, 141, 239, 344
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	4 cut(s)	77, 279, 327, 395
MaeIII	GTNAC	2 cut(s)	152, 281
MalI	GATC	2 cut(s)	75, 116
MboI	GATC	2 cut(s)	73, 114
MboII	GAAGA	3 cut(s)	233, 302, 388
MluCI	AATT	2 cut(s)	161, 401
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	29, 40, 94, 97, 208
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	2 cut(s)	73, 114
NmuCI	GTSAC	2 cut(s)	152, 281
PctI	GAATGC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	336
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	202, 273
RsaNI	GTAC	2 cut(s)	201, 272
RseI	CAYNNNNRTG	1 cut(s)	279
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	73, 114
SetI	ASST	6 cut(s)	33, 40, 84, 219, 239, 273
SfaNI	GCATC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SpeI	ACTAGT	2 cut(s)	278, 394
Sse9I	AATT	2 cut(s)	161, 401
SspMI	CTAG	4 cut(s)	77, 279, 327, 395
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	158, 287
TasI	AATT	2 cut(s)	161, 401
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	336
TscAI	CASTG	2 cut(s)	163, 292
TseFI	GTSAC	2 cut(s)	152, 281
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	2 cut(s)	152, 281
TspDTI	ATGAA	3 cut(s)	80, 222, 389
TspRI	CASTG	2 cut(s)	163, 292
Tth111I	GACNNNGTC	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	76
XspI	CTAG	4 cut(s)	77, 279, 327, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.