Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003101

Physical Location & Seq

Genomic Coordinates Forward (+)

13934254 .. 13935975

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTTCCGGCCACCAGGATGGGCTGGACCTATGCCGTGTGGTGCCTGAGGCTACAAGCAGCGTTTCGAACCATCTTAGCCTGCACCATAGTCTACACCACCACCCTCTACGGTCCACAGCCTCTCAGGCGTTTAGTTGCCTACCCTGCATACTCTTACCTCACCACAATCCTCATCGTCTCAGATGCGACGCTGGGGGAGGCACTGAGAGGCTTCTGGCATGCGCTTTACGCTTGTATTCAGGTGTTGATCCTTTCAATCCTGAGCCTCCAGCTAATAGGCCCGGCTCACTTCAGTTACTTTGTATCATCCCTTGTAGTGGCTTTGTGCGCTTTTGTTGTGGCACTGCCGGGAGCAACCCACTTGATGTCTAAGCGGATTGCGTTCGGGCAGATTGTGATTGTGTATGTAGGCACTGCCATTCATTGCGCAGAAGCTGATGAGTTGGTACTTATGCACCCGATTCAGGTGTCATTGAGTACTATGCTTGGAGCCTCGGCATCTGTTGGGGCTATGTTGTTTCCCAACTTGTTTTTCTATCAAAAGGCATCTCTGGCGGCTGTGTTGTCTCCTTACCTTGCCTACGACGAGGTGAGACAAATGTGCCAAAAATATGCCGAGAATGCTAGGAAAAGGTTCGACTTGTATTTAAATGCAATCTTGTCTCGGGACAGCTCTGCTGCACTTGACTTTATTTTACAGGCCAAGCCCTTGGCTGAAGCAGGAGAAAAGCTCCTTCGAAGGATCGAACATAAACAGGTAAAACTACCTTCTGTACAAGAGTTTGGATCCTCTGCTCGGGTTTTCGCTGCTTACATTGTGATTTTAACCAATGTGGTTTCCTTTTGGACAGGAAGCCTTACTGTGGGAGAGACCAACAATCAGAAGTATCCTCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC FUSC_2

Protein Analysis

301

Amino Acids

33.12

Weight (kDa)

9.08

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09450
fragaria_vesca	FvH4_6g14110 FvH4_6g14110 FvH4_6g14240
malus_domestica	MD04G1122800.v1.1 MD04G1123800.v1.1 MD04G1125300.v1.1 MD12G1139000.v1.1 MD12G1140100.v1.1 MD12G1140200.v1.1 MD12G1140300.v1.1
prunus_persica	Prupe.6G250900_v2.0.a1 Prupe.6G250900_v2.0.a1 Prupe.6G250900_v2.0.a1 Prupe.6G252300_v2.0.a1
pyrus_communis	pycom04g11100 pycom04g11170 pycom12g13330
rosa_chinensis	RchiOBHm_Chr3g0467011 RchiOBHm_Chr3g0467201
rosa_laevigata	RLG00000024520 RLG00000024536
rosa_multiflora	Rmu_sc0001193.1_g000008
rosa_roxburghii	Rroxscaffold_6G00413830 Rroxscaffold_6G00414010
rosa_rugosa	Rorug03G0084800 Rorug03G0085700
rosa_samantha	Rh3AG132700 Rh3AG134100 Rh3BG153700 Rh3BG155400 Rh3CG153700 Rh3CG155000 Rh3DG154800 Rh3DG156200
rosa_wichuraiana	Rw3G012570 Rw3G012690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	2 cut(s)	376, 557
AclWI	GGATC	4 cut(s)	244, 752, 783, 796
AcoI	YGGCCR	1 cut(s)	9
AcuI	CTGAAG	2 cut(s)	277, 738
AfaI	GTAC	3 cut(s)	450, 481, 777
AfiI	CCNNNNNNNGG	4 cut(s)	319, 466, 798, 865
AgsI	TTSAA	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	4 cut(s)	274, 437, 675, 733
AluI	AGCT	4 cut(s)	274, 437, 675, 733
Alw26I	GTCTC	5 cut(s)	184, 573, 589, 669, 866
AlwI	GGATC	4 cut(s)	244, 752, 783, 796
AlwNI	CAGNNNCTG	1 cut(s)	437
Ama87I	CYCGRG	2 cut(s)	666, 798
AoxI	GGCC	3 cut(s)	9, 280, 702
ApeKI	GCWGC	3 cut(s)	59, 680, 809
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	3 cut(s)	226, 332, 431
AspS9I	GGNCC	3 cut(s)	27, 113, 281
AsuC2I	CCSGG	2 cut(s)	284, 351
AsuHPI	GGTGA	2 cut(s)	154, 604
AsuII	TTCGAA	2 cut(s)	67, 739
AvaI	CYCGRG	2 cut(s)	666, 798
AvaII	GGWCC	2 cut(s)	27, 113
AxyI	CCTNAGG	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	42
BbvI	GCAGC	3 cut(s)	71, 667, 796
BccI	CCATC	2 cut(s)	13, 80
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	16
BciVI	GTATCC	1 cut(s)	900
BcnI	CCSGG	2 cut(s)	284, 351
BcoDI	GTCTC	5 cut(s)	184, 573, 589, 669, 866
BfaI	CTAG	1 cut(s)	627
BfuI	GTATCC	1 cut(s)	900
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	4 cut(s)	60, 558, 681, 810
BlsI	GCNGC	4 cut(s)	61, 559, 682, 811
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	3 cut(s)	16, 284, 351
Bme18I	GGWCC	2 cut(s)	27, 113
BmeT110I	CYCGRG	2 cut(s)	666, 798
BmgT120I	GGNCC	3 cut(s)	27, 113, 281
BmiI	GGNNCC	4 cut(s)	6, 44, 493, 790
BmrFI	CCNGG	3 cut(s)	16, 284, 351
BmsI	GCATC	3 cut(s)	175, 509, 557
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
BpmI	CTGGAG	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu14I	TTCGAA	2 cut(s)	67, 739
BpuMI	CCSGG	2 cut(s)	284, 351
BsaI	GGTCTC	1 cut(s)	866
BsaJI	CCNNGG	2 cut(s)	495, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 466, 798, 865
Bse21I	CCTNAGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	495, 711
BseGI	GGATG	2 cut(s)	24, 308
BseLI	CCNNNNNNNGG	4 cut(s)	319, 466, 798, 865
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	5 cut(s)	38, 139, 195, 197, 254
BseXI	GCAGC	3 cut(s)	71, 667, 796
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	2 cut(s)	67, 666
BshFI	GGCC	3 cut(s)	11, 282, 704
BshNI	GGYRCC	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	666, 798
BsiSI	CCGG	3 cut(s)	8, 284, 350
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	4 cut(s)	319, 466, 798, 865
BsmAI	GTCTC	5 cut(s)	184, 573, 589, 669, 866
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	11, 282, 704
Bso31I	GGTCTC	1 cut(s)	866
BsoBI	CYCGRG	2 cut(s)	666, 798
Bsp119I	TTCGAA	2 cut(s)	67, 739
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	3 cut(s)	249, 744, 788
BspACI	CCGC	2 cut(s)	376, 557
BspANI	GGCC	3 cut(s)	11, 282, 704
BspCNI	CTCAG	5 cut(s)	39, 138, 194, 198, 255
BspLI	GGNNCC	4 cut(s)	6, 44, 493, 790
BspPI	GGATC	4 cut(s)	244, 752, 783, 796
BspT104I	TTCGAA	2 cut(s)	67, 739
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	775
BssECI	CCNNGG	2 cut(s)	495, 711
BssMI	GATC	3 cut(s)	249, 744, 788
BssT1I	CCWWGG	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	113, 865
BstAUI	TGTACA	1 cut(s)	775
BstBI	TTCGAA	2 cut(s)	67, 739
BstC8I	GCNNGC	2 cut(s)	82, 222
BstDEI	CTNAG	7 cut(s)	47, 76, 125, 181, 206, 263, 372
BstF5I	GGATG	2 cut(s)	24, 308
BstHHI	GCGC	3 cut(s)	226, 332, 431
BstKTI	GATC	3 cut(s)	252, 747, 791
BstMAI	GTCTC	5 cut(s)	184, 573, 589, 669, 866
BstMBI	GATC	3 cut(s)	249, 744, 788
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 146, 230, 329, 554, 623
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	14, 282, 349
BstV1I	GCAGC	3 cut(s)	71, 667, 796
BstX2I	RGATCY	1 cut(s)	788
BstXI	CCANNNNNNTGG	2 cut(s)	19, 712
BstYI	RGATCY	1 cut(s)	788
Bsu36I	CCTNAGG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	3 cut(s)	11, 282, 704
BtsCI	GGATG	2 cut(s)	24, 308
BtsI	GCAGTG	2 cut(s)	344, 414
BtsIMutI	CAGTG	3 cut(s)	203, 344, 414
Cac8I	GCNNGC	2 cut(s)	82, 222
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	3 cut(s)	226, 332, 431
Cfr13I	GGNCC	3 cut(s)	27, 113, 281
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	449, 480, 776
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	3 cut(s)	449, 480, 776
DdeI	CTNAG	7 cut(s)	47, 76, 125, 181, 206, 263, 372
DpnI	GATC	3 cut(s)	251, 746, 790
DpnII	GATC	3 cut(s)	249, 744, 788
DraI	TTTAAA	1 cut(s)	651
EaeI	YGGCCR	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	27, 113
Eco57I	CTGAAG	2 cut(s)	277, 738
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	2 cut(s)	666, 798
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	711
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	1 cut(s)	224
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	60, 558, 681, 810
FokI	GGATG	2 cut(s)	31, 295
Fsp4HI	GCNGC	4 cut(s)	60, 558, 681, 810
FspBI	CTAG	1 cut(s)	627
FspI	TGCGCA	1 cut(s)	430
GlaI	GCGC	3 cut(s)	225, 331, 430
GluI	GCNGC	4 cut(s)	60, 558, 681, 810
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	11, 282, 704
HapII	CCGG	3 cut(s)	8, 284, 350
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	3 cut(s)	226, 332, 431
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	3 cut(s)	224, 330, 429
HinP1I	GCGC	3 cut(s)	224, 330, 429
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	3 cut(s)	8, 284, 350
HphI	GGTGA	2 cut(s)	154, 604
Hpy166II	GTNNAC	2 cut(s)	94, 116
Hpy188I	TCNGA	2 cut(s)	184, 885
Hpy188III	TCNNGA	2 cut(s)	262, 668
Hpy8I	GTNNAC	2 cut(s)	94, 116
Hpy99I	CGWCG	2 cut(s)	193, 590
HpyAV	CCTTC	3 cut(s)	735, 746, 780
HpyCH4III	ACNGT	2 cut(s)	113, 865
HpyCH4V	TGCA	5 cut(s)	84, 149, 457, 656, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 146, 230, 329, 554, 623
HpyF3I	CTNAG	7 cut(s)	47, 76, 125, 181, 206, 263, 372
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	3 cut(s)	224, 330, 429
Kzo9I	GATC	3 cut(s)	249, 744, 788
LmnI	GCTCC	3 cut(s)	353, 491, 738
Lsp1109I	GCAGC	3 cut(s)	71, 667, 796
LweI	GCATC	3 cut(s)	175, 509, 557
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	251, 746, 790
MboI	GATC	3 cut(s)	249, 744, 788
MflI	RGATCY	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	2 cut(s)	650, 827
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	3 cut(s)	8, 284, 350
MspR9I	CCNGG	3 cut(s)	16, 284, 351
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	6 cut(s)	127, 146, 230, 329, 554, 623
NciI	CCSGG	2 cut(s)	284, 351
NdeII	GATC	3 cut(s)	249, 744, 788
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	4 cut(s)	6, 44, 493, 790
NmeAIII	GCCGAG	2 cut(s)	476, 643
NsbI	TGCGCA	1 cut(s)	430
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	2 cut(s)	67, 739
PaeI	GCATGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	4 cut(s)	61, 559, 682, 811
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	4 cut(s)	6, 44, 493, 790
PspPI	GGNCC	3 cut(s)	27, 113, 281
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	3 cut(s)	450, 481, 777
RsaNI	GTAC	3 cut(s)	449, 480, 776
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	650, 827
SatI	GCNGC	4 cut(s)	60, 558, 681, 810
Sau3AI	GATC	3 cut(s)	249, 744, 788
Sau96I	GGNCC	3 cut(s)	27, 113, 281
ScaI	AGTACT	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	16, 284, 351
SfaNI	GCATC	3 cut(s)	175, 509, 557
SfuI	TTCGAA	2 cut(s)	67, 739
SinI	GGWCC	2 cut(s)	27, 113
SmiI	ATTTAAAT	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	224
SsiI	CCGC	2 cut(s)	376, 557
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	3 cut(s)	14, 282, 349
StyI	CCWWGG	1 cut(s)	711
SwaI	ATTTAAAT	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	113, 865
TaqI	TCGA	4 cut(s)	67, 639, 739, 747
TatI	WGTACW	2 cut(s)	479, 775
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	650, 827
Tru9I	TTAA	2 cut(s)	650, 827
TscAI	CASTG	3 cut(s)	210, 351, 421
TseI	GCWGC	3 cut(s)	59, 680, 809
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	3 cut(s)	210, 351, 421
VpaK11BI	GGWCC	2 cut(s)	27, 113
XceI	RCATGY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.