Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0018508

Physical Location & Seq

Genomic Coordinates Forward (+)

23744603 .. 23745079

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1156900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCAGACTTACCCTTTGTGCTAGCTTGTTCTGTAACTCTATTGGCTTCTTCAGTAGCCTCTGGGGCAATTGTTGAGCATTCTTTTAGTGTGAACAACTTGACTGTTAGCCGATTGTGCCGGAATCAATCGATTATTGTAGTAAATGGGTGTTATCCCGGACCAACAATACATGCACGAAATGGAGACACACTTATCGTCCACGTTTTAAACCAGTCGCCCTACAACATTACTATTCACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

82

Amino Acids

8.72

Weight (kDa)

6.88

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	31 - 81	1.2e-12	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018508)

Species	Orthologous Gene IDs
malus_domestica	MD12G1156900.v1.1
pyrus_communis	pycom11g10070
rosa_chinensis	RchiOBHm_Chr6g0263741
rosa_multiflora	Rmu_sc0024604.1_g000001
rosa_samantha	Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	180
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	214, 245
BseCI	ATCGAT	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	214, 245
BshVI	ATCGAT	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	121, 159
BsmAI	GTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	214, 245
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 117
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	131
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	4 cut(s)	26, 47, 59, 111
CviKI_1	RGCY	4 cut(s)	26, 47, 59, 111
DraI	TTTAAA	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	36
FaeI	CATG	1 cut(s)	176
FaiI	YATR	1 cut(s)	174
FatI	CATG	1 cut(s)	172
FspBI	CTAG	1 cut(s)	23
HapII	CCGG	2 cut(s)	121, 159
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	121, 159
Hpy166II	GTNNAC	2 cut(s)	94, 202
Hpy8I	GTNNAC	2 cut(s)	94, 202
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 117
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	48, 134, 172, 226, 227
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	42
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	1 cut(s)	70
MseI	TTAA	1 cut(s)	209
MspI	CCGG	2 cut(s)	121, 159
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	65, 117
NciI	CCSGG	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	176
NspI	RCATGY	1 cut(s)	176
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	2 cut(s)	28, 207
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	1 cut(s)	245
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.