Rh5BG419000

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018508
Physical Location & Seq
Reverse (-)
67823028 .. 67824063
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG419000.1

Sequence Viewer

Length: 516 bp
ATGGGCGTTGCTCTTCTTTCAGTTGTTAAGCTCTTTGTTTTCTCTTTCGTCACATTGGTTCTCATTCCTCAGCAGACTCTTGCAAGCATAACGAGACATTACAAGTTTGATATCCAAATGAAAAATGTGACAAGATTTTGTCACACGAAGAGCATTGTAACTGTAAACGGTCAATTTCCTGGGCCTCGAGTTGTTGCTAGGGAGGGTGATCGCCTCCTCATTAGAGTGGTTAACCATGTTCAAAGCAACATCTCCATCCACTGGCATGGGATTCGACAACTTCAAACTGGATGGGCAGATGGTCCAGCATACATTACCCAATGTCCAATACAATCTGGCAACGGTTACGTGTACAACTTCACCATTATAGGCCAAAGAGGCACTCTTTGGTGGCATGCTCACATTTCATGGCTAAGATCAACCATCTATGGTCCCCTAATCATTCTTCCCAAGCGTGGTGTTCCTTATCCATTTACCAAACCCTACAAGGAAGTTCCCATCATCTTTGGTAAGTAA

Protein Analysis

171

Amino Acids

19.48

Weight (kDa)

10.29

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 38 - 151 5e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018508)

Species Orthologous Gene IDs
malus_domestica MD12G1156900.v1.1
pyrus_communis pycom11g10070
rosa_chinensis RchiOBHm_Chr6g0263741
rosa_multiflora Rmu_sc0024604.1_g000001
rosa_samantha Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 261, 455
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 2 cut(s) 242, 284
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 182, 370
AspS9I GGNCC 3 cut(s) 182, 302, 431
AsuHPI GGTGA 2 cut(s) 218, 352
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 2 cut(s) 302, 431
BbvCI CCTCAGC 1 cut(s) 69
BccI CCATC 5 cut(s) 263, 285, 293, 431, 506
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 378
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 2 cut(s) 302, 431
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 182, 302, 431
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 455
Bse1I ACTGG 2 cut(s) 266, 292
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 255, 296
BseLI CCNNNNNNNGG 2 cut(s) 261, 455
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 266, 292
BseRI GAGGAG 1 cut(s) 206
BshFI GGCC 2 cut(s) 184, 372
BsiHKCI CYCGRG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 261, 455
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 2 cut(s) 184, 372
BsoBI CYCGRG 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 208, 416
BspANI GGCC 2 cut(s) 184, 372
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 433
BspQI GCTCTTC 2 cut(s) 18, 143
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 2 cut(s) 266, 292
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 208, 416
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 163, 170, 344
Bst6I CTCTTC 2 cut(s) 18, 143
BstAUI TGTACA 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 85, 396
BstDEI CTNAG 2 cut(s) 69, 413
BstF5I GGATG 2 cut(s) 255, 296
BstKTI GATC 2 cut(s) 211, 419
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 2 cut(s) 208, 416
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 266
BsuRI GGCC 2 cut(s) 184, 372
BtsCI GGATG 2 cut(s) 255, 296
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 85, 396
Cfr13I GGNCC 3 cut(s) 182, 302, 431
Csp6I GTAC 1 cut(s) 352
CviAII CATG 4 cut(s) 236, 266, 395, 408
CviJI RGCY 4 cut(s) 31, 184, 372, 412
CviKI_1 RGCY 4 cut(s) 31, 184, 372, 412
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 69, 413
DpnI GATC 2 cut(s) 210, 418
DpnII GATC 2 cut(s) 208, 416
Eam1104I CTCTTC 2 cut(s) 18, 143
EarI CTCTTC 2 cut(s) 18, 143
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 302, 431
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 178
EcoRV GATATC 1 cut(s) 112
FaeI CATG 4 cut(s) 239, 269, 398, 411
FaiI YATR 8 cut(s) 89, 237, 267, 310, 368, 396, 409, 429
FaqI GGGAC 1 cut(s) 417
FatI CATG 4 cut(s) 235, 265, 394, 407
FokI GGATG 2 cut(s) 242, 303
FspBI CTAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 184, 372
Hin1II CATG 4 cut(s) 239, 269, 398, 411
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 76, 271
HpaI GTTAAC 1 cut(s) 232
HphI GGTGA 2 cut(s) 218, 352
Hpy166II GTNNAC 3 cut(s) 166, 232, 352
Hpy8I GTNNAC 3 cut(s) 166, 232, 352
HpyCH4III ACNGT 3 cut(s) 163, 170, 344
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 69, 413
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 4 cut(s) 239, 269, 398, 411
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 208, 416
LguI GCTCTTC 2 cut(s) 18, 143
LpnPI CCDG 6 cut(s) 165, 192, 247, 273, 318, 321
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 5 cut(s) 49, 127, 140, 157, 344
MalI GATC 2 cut(s) 210, 418
MboI GATC 2 cut(s) 208, 416
MboII GAAGA 3 cut(s) 5, 160, 437
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 6 cut(s) 78, 195, 196, 224, 227, 371
MseI TTAA 2 cut(s) 27, 231
MslI CAYNNNNRTG 2 cut(s) 224, 264
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 2 cut(s) 208, 416
NlaIII CATG 4 cut(s) 239, 269, 398, 411
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 3 cut(s) 49, 127, 140
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 186
PciSI GCTCTTC 2 cut(s) 18, 143
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 261
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 3 cut(s) 182, 302, 431
PspXI VCTCGAGB 1 cut(s) 186
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 224, 264
SapI GCTCTTC 2 cut(s) 18, 143
SaqAI TTAA 2 cut(s) 27, 231
Sau3AI GATC 2 cut(s) 208, 416
Sau96I GGNCC 3 cut(s) 182, 302, 431
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 180
SetI ASST 2 cut(s) 33, 351
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 2 cut(s) 302, 431
SlaI CTCGAG 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 224, 264
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
SphI GCATGC 1 cut(s) 398
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 163, 170, 344
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 187, 274
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 27, 231
Tru9I TTAA 2 cut(s) 27, 231
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 3 cut(s) 49, 127, 140
Tsp45I GTSAC 3 cut(s) 49, 127, 140
TspDTI ATGAA 2 cut(s) 134, 396
TspRI CASTG 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 302, 431
XceI RCATGY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.