Rh3BG132800

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018508
Physical Location & Seq
Reverse (-)
11192650 .. 11195276
2627 bp
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UTR
Exon/CDS
Intron
Rh3BG132800.1

Sequence Viewer

Length: 315 bp
ATGGCGCGCTTTGCCTTTGCGCTAGCATGTGCCCTAGCTTTGTTGGCTTCTTCAGTAGCCTCTGCTGCAATAGTCGAGCATTCTTTTCATGTGAATAACTTGACTGTTACGCGGCTATGCTATAATCAACCGATAACCGCAGTTAATGGGGAGTATCCAGGTCCAACAATAAGGGCAAGAGAGGGTATATGGATGGTACATTGTCATCTGGACGTGCACTTGCCGTGGGGTCTGGCCACGGCTTTTGAGGTTGAAAATGGACCAACTGTTGCATCTACTTTGCCTCCGCCACCGCTCGATCTACCCAAATGTTAA

Protein Analysis

104

Amino Acids

11.16

Weight (kDa)

6.15

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 60 - 87 1.6e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018508)

Species Orthologous Gene IDs
malus_domestica MD12G1156900.v1.1
pyrus_communis pycom11g10070
rosa_chinensis RchiOBHm_Chr6g0263741
rosa_multiflora Rmu_sc0024604.1_g000001
rosa_samantha Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 2 cut(s) 7, 112
AciI CCGC 4 cut(s) 112, 138, 287, 293
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 254
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 219
Alw44I GTGCAC 1 cut(s) 215
AoxI GGCC 1 cut(s) 234
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 3 cut(s) 7, 9, 22
AspS9I GGNCC 2 cut(s) 161, 260
AsuNHI GCTAGC 1 cut(s) 22
AvaII GGWCC 2 cut(s) 161, 260
BaeGI GKGCMC 2 cut(s) 34, 219
BalI TGGCCA 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 187
BceAI ACGGC 2 cut(s) 208, 255
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 165
BfaI CTAG 2 cut(s) 23, 35
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 2 cut(s) 66, 113
BlsI GCNGC 2 cut(s) 67, 114
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 161, 260
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 161, 260
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 281
BmtI GCTAGC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 224, 237
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 224, 237
BseGI GGATG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 5
BseSI GKGCMC 2 cut(s) 34, 219
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 7, 112
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 34, 219
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 4 cut(s) 112, 138, 287, 293
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 2 cut(s) 7, 112
BspOI GCTAGC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 224, 237
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 106, 268
BstC8I GCNNGC 2 cut(s) 7, 24
BstDSI CCRYGG 2 cut(s) 224, 237
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 7, 112
BstHHI GCGC 3 cut(s) 7, 9, 22
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 11, 44, 65
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 157
BstSLI GKGCMC 2 cut(s) 34, 219
BstUI CGCG 2 cut(s) 7, 112
BstV1I GCAGC 1 cut(s) 52
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 224, 237
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 7, 24
CfoI GCGC 3 cut(s) 7, 9, 22
Cfr13I GGNCC 2 cut(s) 161, 260
Csp6I GTAC 1 cut(s) 197
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 2 cut(s) 27, 89
CviJI RGCY 6 cut(s) 38, 47, 59, 115, 236, 242
CviKI_1 RGCY 6 cut(s) 38, 47, 59, 115, 236, 242
CviQI GTAC 1 cut(s) 197
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 234
EciI GGCGGA 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 161, 260
Eco57I CTGAAG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 30, 92
FaiI YATR 6 cut(s) 28, 90, 118, 123, 188, 190
FatI CATG 2 cut(s) 26, 88
Fnu4HI GCNGC 2 cut(s) 66, 113
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 66, 113
FspBI CTAG 2 cut(s) 23, 35
GlaI GCGC 3 cut(s) 6, 8, 21
GluI GCNGC 2 cut(s) 66, 113
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 3 cut(s) 7, 9, 22
Hin1II CATG 2 cut(s) 30, 92
Hin6I GCGC 3 cut(s) 5, 7, 20
HinP1I GCGC 3 cut(s) 5, 7, 20
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 106, 268
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 68, 217, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 44, 65
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 30, 92
HspAI GCGC 3 cut(s) 5, 7, 20
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 4 cut(s) 144, 171, 194, 218
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 281
MaeI CTAG 2 cut(s) 23, 35
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 300
MbiI CCGCTC 1 cut(s) 295
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 42
MhlI GDGCHC 2 cut(s) 34, 219
MlsI TGGCCA 1 cut(s) 236
MluNI TGGCCA 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 4 cut(s) 70, 175, 241, 294
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 144, 313
Msp20I TGGCCA 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 2 cut(s) 7, 112
MwoI GCNNNNNNNGC 3 cut(s) 11, 44, 65
NdeII GATC 1 cut(s) 298
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 30, 92
NspI RCATGY 1 cut(s) 30
PauI GCGCGC 1 cut(s) 5
PctI GAATGC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 67, 114
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 2 cut(s) 161, 260
PteI GCGCGC 1 cut(s) 5
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 144, 313
SatI GCNGC 2 cut(s) 66, 113
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 161, 260
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 2 cut(s) 34, 219
SetI ASST 4 cut(s) 40, 163, 216, 252
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 2 cut(s) 161, 260
SsiI CCGC 4 cut(s) 112, 138, 287, 293
SspMI CTAG 2 cut(s) 23, 35
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 106, 268
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 75, 297
TauI GCSGC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 144, 313
Tru9I TTAA 2 cut(s) 144, 313
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 77
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 2 cut(s) 161, 260
XceI RCATGY 1 cut(s) 30
XspI CTAG 2 cut(s) 23, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.