Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024604.1

Orthogroup ID

OG0018508

Physical Location & Seq

Genomic Coordinates Reverse (-)

223 .. 734

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcgcgctttgcctttgcgctagcatgtgccctagctttgttggcttcttcagtagcctctgctgcaatagtcgagcattcttttcatgtgaataacttgactgttacgcggctatgctataatcaaccgataaccgcagttaatggggagtatccaggtccaacaataagggcaagagagggtgacactcttgttgttcacgtcttgaaccagtccccctataacattactattcattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0010035 GO:0010038 GO:0010228 GO:0016491 GO:0016722 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0046688 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

81

Amino Acids

8.81

Weight (kDa)

6.89

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018508)

Species	Orthologous Gene IDs
malus_domestica	MD12G1156900.v1.1
pyrus_communis	pycom11g10070
rosa_chinensis	RchiOBHm_Chr6g0263741
rosa_multiflora	Rmu_sc0024604.1_g000001
rosa_samantha	Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	7, 112
AciI	CCGC	2 cut(s)	112, 138
AcuI	CTGAAG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	65
AspLEI	GCGC	3 cut(s)	7, 9, 22
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	23, 35
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	66, 113
BlsI	GCNGC	2 cut(s)	67, 114
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	161
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	214
BsePI	GCGCGC	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	2 cut(s)	7, 112
BslFI	GGGAC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	112, 138
BspFNI	CGCG	2 cut(s)	7, 112
BspOI	GCTAGC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	214
BssHII	GCGCGC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	7, 24
BstFNI	CGCG	2 cut(s)	7, 112
BstHHI	GCGC	3 cut(s)	7, 9, 22
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 44, 65
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	34
BstUI	CGCG	2 cut(s)	7, 112
BstV1I	GCAGC	1 cut(s)	52
BsuI	GTATCC	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	7, 24
CfoI	GCGC	3 cut(s)	7, 9, 22
Cfr13I	GGNCC	1 cut(s)	161
CviAII	CATG	2 cut(s)	27, 89
CviJI	RGCY	4 cut(s)	38, 47, 59, 115
CviKI_1	RGCY	4 cut(s)	38, 47, 59, 115
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	30, 92
FaiI	YATR	5 cut(s)	28, 90, 118, 123, 225
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	26, 88
Fnu4HI	GCNGC	2 cut(s)	66, 113
Fsp4HI	GCNGC	2 cut(s)	66, 113
FspBI	CTAG	2 cut(s)	23, 35
GlaI	GCGC	3 cut(s)	6, 8, 21
GluI	GCNGC	2 cut(s)	66, 113
HhaI	GCGC	3 cut(s)	7, 9, 22
Hin1II	CATG	2 cut(s)	30, 92
Hin6I	GCGC	3 cut(s)	5, 7, 20
HinP1I	GCGC	3 cut(s)	5, 7, 20
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 44, 65
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	30, 92
HspAI	GCGC	3 cut(s)	5, 7, 20
LpnPI	CCDG	3 cut(s)	144, 171, 227
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	23, 35
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	106, 185
MboII	GAAGA	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	70, 175
MseI	TTAA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	7, 112
MwoI	GCNNNNNNNGC	3 cut(s)	11, 44, 65
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	30, 92
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	5
PctI	GAATGC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	67, 114
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	161
PteI	GCGCGC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	66, 113
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	40, 163, 207
SinI	GGWCC	1 cut(s)	161
SsiI	CCGC	2 cut(s)	112, 138
SspMI	CTAG	2 cut(s)	23, 35
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	75
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	77, 227
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	2 cut(s)	23, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.