Rh6AG129000

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018508
Physical Location & Seq
Reverse (-)
19429012 .. 19429368
357 bp
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UTR
Exon/CDS
Intron
Rh6AG129000.1

Sequence Viewer

Length: 264 bp
ATGGCAAAAACCAACAACTTCTGCTTCTGTTCTTTACTTCCCTTCTTATGTTTTGTTGGGTTCCTCTTCATTCCAGCCAAAGCTGGTGTGAAGTCATACCAATTTGACATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTAAATGGGTTGTTCCCTGGACCTACAATTTATGCTAGAGAAGGAGATACAGTTCTAGTTAATGTCACCAATCATGCTCAGTATAACATGTCAATTCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

9.07

Isoelectric Point (pI)

19.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 87 1.1e-14 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018508)

Species Orthologous Gene IDs
malus_domestica MD12G1156900.v1.1
pyrus_communis pycom11g10070
rosa_chinensis RchiOBHm_Chr6g0263741
rosa_multiflora Rmu_sc0024604.1_g000001
rosa_samantha Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 2 cut(s) 195, 215
BfuAI ACCTGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 160, 211
Bst6I CTCTTC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 144, 237
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 179
CviAII CATG 2 cut(s) 233, 247
CviJI RGCY 3 cut(s) 77, 83, 148
CviKI_1 RGCY 3 cut(s) 77, 83, 148
DdeI CTNAG 2 cut(s) 144, 237
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 2 cut(s) 236, 250
FaiI YATR 6 cut(s) 49, 97, 192, 234, 243, 248
FatI CATG 2 cut(s) 232, 246
FspBI CTAG 2 cut(s) 195, 215
Hin1II CATG 2 cut(s) 236, 250
HphI GGTGA 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 52, 194
HpyCH4III ACNGT 2 cut(s) 160, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 144, 237
Hsp92II CATG 2 cut(s) 236, 250
LpnPI CCDG 5 cut(s) 69, 87, 115, 162, 189
MaeI CTAG 2 cut(s) 195, 215
MaeIII GTNAC 2 cut(s) 154, 223
MboII GAAGA 2 cut(s) 58, 130
MfeI CAATTG 1 cut(s) 150
MluCI AATT 4 cut(s) 101, 150, 186, 252
MnlI CCTC 1 cut(s) 74
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 135
NlaIII CATG 2 cut(s) 236, 250
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 250
PciI ACATGT 1 cut(s) 246
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 177
SetI ASST 3 cut(s) 85, 134, 184
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 4 cut(s) 101, 150, 186, 252
SspMI CTAG 2 cut(s) 195, 215
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 2 cut(s) 160, 211
TasI AATT 4 cut(s) 101, 150, 186, 252
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 58, 245
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 195, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.