Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0018508

Physical Location & Seq

Genomic Coordinates Forward (+)

8416481 .. 8417718

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAACACTCAAAAGTTTGTTCTAACAACCGTATATGCATATCCCTGGGTGTTCATCTTCTTTCAACACCACCATTTCTTAGGCTCTTTCTCTTCTCCGTCATAACGTTTTGTGTTATTCCTCAACATGCTCTTGCTGGCATAACCAGACACTACAAGTTTCAAAACGTGACAAGATTGTGTCACACAAAGAGCATAATAACAGTGAACGGGCAGTTTCCTGGCCCTAGAATCATTGCTAGAGAGGGTGATCAACTCCTAATTAAAGTGGTTAACCACGTCCAAAACAACATCTCTATCCACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016722 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

103

Amino Acids

11.6

Weight (kDa)

10.32

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018508)

Species	Orthologous Gene IDs
malus_domestica	MD12G1156900.v1.1
pyrus_communis	pycom11g10070
rosa_chinensis	RchiOBHm_Chr6g0263741
rosa_multiflora	Rmu_sc0024604.1_g000001
rosa_samantha	Rh3BG132800 Rh5BG418700 Rh5BG419000 Rh5BG523200 Rh5DG535500 Rh6AG129000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	66, 164
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	45, 220
AoxI	GGCC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	47, 222
BclI	TGATCA	1 cut(s)	250
BfaI	CTAG	2 cut(s)	228, 240
Bme1390I	CCNGG	2 cut(s)	47, 222
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	47, 222
BsaJI	CCNNGG	2 cut(s)	45, 46
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	47, 222
BseDI	CCNNGG	2 cut(s)	45, 46
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	45, 46
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	47, 222
Bst4CI	ACNGT	2 cut(s)	32, 205
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	47, 222
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	45, 220
BsuRI	GGCC	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	210, 301
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	2 cut(s)	85, 225
CviKI_1	RGCY	2 cut(s)	85, 225
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	45, 220
EcoT22I	ATGCAT	1 cut(s)	41
FaeI	CATG	1 cut(s)	131
FaiI	YATR	7 cut(s)	35, 37, 41, 104, 129, 143, 197
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	250
FspBI	CTAG	2 cut(s)	228, 240
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	231
HpaI	GTTAAC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	208, 274
Hpy8I	GTNNAC	2 cut(s)	208, 274
HpyCH4III	ACNGT	2 cut(s)	32, 205
HpyCH4IV	ACGT	3 cut(s)	107, 168, 279
HpyCH4V	TGCA	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	3 cut(s)	107, 168, 279
Hsp92II	CATG	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	32, 59, 123, 160, 207, 234, 289
MaeI	CTAG	2 cut(s)	228, 240
MaeII	ACGT	3 cut(s)	107, 168, 279
MaeIII	GTNAC	2 cut(s)	169, 182
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	50, 85
MluCI	AATT	1 cut(s)	261
MnlI	CCTC	2 cut(s)	132, 238
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	2 cut(s)	264, 273
MspR9I	CCNGG	2 cut(s)	47, 222
MvaI	CCWGG	2 cut(s)	47, 222
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	169, 182
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	1 cut(s)	131
PasI	CCCWGGG	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	45, 220
PspGI	CCWGG	2 cut(s)	45, 220
PspPI	GGNCC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	264, 273
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	47, 222
SetI	ASST	3 cut(s)	110, 171, 282
Sse9I	AATT	1 cut(s)	261
SspMI	CTAG	2 cut(s)	228, 240
StyD4I	CCNGG	2 cut(s)	45, 220
TaaI	ACNGT	2 cut(s)	32, 205
TaiI	ACGT	3 cut(s)	110, 171, 282
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	264, 273
Tru9I	TTAA	2 cut(s)	264, 273
TscAI	CASTG	2 cut(s)	210, 308
TseFI	GTSAC	2 cut(s)	169, 182
Tsp45I	GTSAC	2 cut(s)	169, 182
TspDTI	ATGAA	2 cut(s)	17, 44
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	210, 308
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	2 cut(s)	228, 240
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.