Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015295

Physical Location & Seq

Genomic Coordinates Reverse (-)

1072057 .. 1075377

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1016800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGGATCGAGCGAATGGGAATCTTGCCGCCGACGAGGCGTCTCAGAGCAAGGTCACTCGCCATATCTCCAAGCAAAATAAACACAACCCAGAAGAGAAAATGGGATTCTCCGAAAAGGGGTTCGGATTTCTCAGAGAATCAGACATGGGTTCTGATGGGTTCCAATCAAAACCCTCAAAGACTGGAAATTTAAGTTCCCAGGAGCTGACTCTCAGCTACCTCTGCGACAATTCCAAACTGGGTTTTCTCGAGAAGGAGTTCGCCGGCGCAAATTTGCTGACTTCGTTGGAGAAAGAGAGTTTCAAAGGTAAAGAAGCCATGGTTTCGGAGAATTCTAACAAATGGGTAGAGAGAGATTTCCTTAATTTGAACGAAACCAGGTTGAATTGCTCGAAGCGAGAGCTTGCGGAGGAGGCGGAGAGAGAAAGCAGGGACGACAAAAAGCCAAAGCTCGAGACTTTGAATCTCTCTCTAGCCTTGCCGGAGGTATCTCTCTCTCTCACCGCCTCAAACGCCTTGCAGAATGGCGATCCTCCGGCGATGCTGCGGCCGAGTAGAAGCATACAGTCGTTGGCGCCGTCTGCTAACAACACACAGACAACCTGCTCCAATGATTTCACAGCAGCTTCATTGTCGTACTCTTACTCCCACCCATTTTCCCACAACCCCAGTTGCTCGCTTACCCGAAATTCGACGGATTTCGATTATTCTGTTGGGAAAGATGATCAAATTTATAACTGTGGGGAGGGGACTAATGGGTCTGTTCATAGCAGGTTTAAGCCGATTGGAGATGGAGTTGGTTTGTCGAATCACGGCGGCGGGATTTTGTCAATGATGCAGAGTAATCGTAAGGATTCTTGTAATAATAACAGTGTTTATAGGACAACTAGCTCTGATAACCTTTCCTTTTTTCCATCTGAATTGCCTGCTAAGCCGACAATCGATACCCTTTCTGGGGATTCTAGAGGGAGAGGTTCTGAAAGTTTGAGAGGATTGGAGAGTATGGATGTTGGTGGGAGAGCCAGGAAACTTTCTAGACCGGAGAGAATTCTTCACGAAGTTGTTTCGGAATCTGTTACTGTCATGGCTCAGACAGTTCAAGAGCTTCGTGAGGAAATGCTCTTATCAACTAAGGAATACTTGAAGAATCTGATATCCACGCCGGAGAAGAAGGAAGAATTGGTGAGCCTTCAAAACCGGCTTCAGAGAAGGTCTGATCTTACAAAGGAGAATCTCTCTAAATGTCAGAAGGATCAATTGGAGATGTTGGTTGCTGTGAAAATGGGACTCGGGAACTTTGTATCTGGGAAAAACCGCCTTCCAGCAACCGAGCTGGTGGAGATTTTCTCGTTTATGAGGTGTAAGAATGTGAATTGCAAGAGCTTATTGCCTGTTGATGATTGTGACTGCAAAATTTGCTCTGCAAATAAGGGGTTTTGTAGTTCCTGCATGTGTCCTGTGTGTTTGAATTTCGACTGTGCCAATAATACTTGTGGTTGGGTTGGCTGTGATGTTTGTTCGCATTGGTGTCACGCTGCTTGTGGTATTCAGAGGAACCTCATTAAACCAGGTCCTAGCTTGAAAGGTCCCTCTGGGACAACTGAGATGCAATTTCATTGCATTGGATGCGGCCATGCTTCGGAAATGTTTGGTTTTGTCAAGGATGTGTTTCTGTGCTGTGCAAAAGACTGGGGACTAGAGACCCTTATCAAGGAGCTTGACTGTGTTAAGAAGATTTTTAGGAGAAGCGACGATTTTAAAGGCCGGGAACTGCATATTAAGGCTGAGGAGATCATCTCCAAGCTTGGAAGCCAATTGATGTCTCCTTCAGACGCCTGCAGTTTCATTATTCAGTTCTTTAACTATACAGATGGAGTGTCAGAATATCCTGCTTCTACCATATCCACAAAAGAGTTGGCTGCTTCTCAAGCCTGCCTGAGAAAAGATTCGACCCCTTTTTCACAATCTGTTTCTGTACCTCCTAAATATGCTGTTTACAACACTAGTTCTAGTATGCAATGTGATTCGCTGTCTAATGATACCCGTCAGAACCCCCTCAAATCGTCCCATATAAGCAATGAGGATGAGTTCCAGTTTGGAACATTACCAAAAATAGACGGGTTTGAGAGCTTGGAAAGCGTAGTGAGGATAAAGGAAGCGGAAGCTAGAATGTTCCAGAGCAAGGCTGATGAAGCGCGGAGAGAGGCAGAAGGGTACCATCAGATGATACGGACAAAGACAGAGAAGCTGGAGGAAGAGTACGCCGGAAAGTTTTCCAAATTGTGTCTGAAAGAGACGGAGGAAAAGCGAAGGAAGAAACTGGAGGAGCTGAAAATTTTGGAAAGTTCACATTGCGATTACTACAACATGAAAACTAGAATGCAAGCTGAGATTGCTGGCTTGTTGGAGAGAATGGAAGCAACAAAGCAGCAAAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009880 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0030154 GO:0032501 GO:0032502 GO:0045165 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

814

Amino Acids

90.56

Weight (kDa)

6.38

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	454 - 578	4.2e-36	PHD - plant homeodomain finger protein
Oberon_cc	PF16312	676 - 802	4.8e-46	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14740
fragaria_vesca	FvH4_4g33110
malus_domestica	MD13G1016800.v1.1 MD16G1014700.v1.1
prunus_persica	Prupe.1G336600_v2.0.a1
pyrus_communis	pycom16g01350
rosa_chinensis	RchiOBHm_Chr4g0442161
rosa_laevigata	RLG00000006035
rosa_multiflora	Rmu_sc0010284.1_g000009
rosa_roxburghii	Rroxscaffold_5G00383070
rosa_rugosa	Rorug04G0339300
rosa_samantha	Rh4AG390900 Rh4BG404500 Rh4CG419500 Rh4DG397400
rosa_wichuraiana	Rw4G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AasI	GACNNNNNNGTC	1 cut(s)	757
Acc36I	ACCTGC	2 cut(s)	611, 762
Acc65I	GGTACC	1 cut(s)	2214
AccB1I	GGYRCC	2 cut(s)	574, 2214
AccII	CGCG	1 cut(s)	2197
AclWI	GGATC	3 cut(s)	12, 524, 1260
AcoI	YGGCCR	2 cut(s)	548, 1630
AcsI	RAATTY	9 cut(s)	187, 271, 331, 688, 729, 1047, 1413, 1468, 2334
AcuI	CTGAAG	2 cut(s)	1187, 1812
AcyI	GRCGYC	3 cut(s)	38, 575, 1833
AfaI	GTAC	4 cut(s)	638, 1977, 2216, 2261
AfiI	CCNNNNNNNGG	6 cut(s)	117, 954, 955, 1639, 1711, 2182
AgsI	TTSAA	9 cut(s)	304, 370, 385, 463, 1100, 1144, 1193, 1468, 1582
AhdI	GACNNNNNGTC	1 cut(s)	37
AhlI	ACTAGT	1 cut(s)	2003
AjnI	CCWGG	4 cut(s)	198, 377, 1022, 1567
AjuI	GAANNNNNNNTTGG	4 cut(s)	1163, 1195, 1241, 1273
Alw26I	GTCTC	5 cut(s)	45, 449, 1694, 1827, 2288
AlwI	GGATC	3 cut(s)	12, 524, 1260
AlwNI	CAGNNNCTG	1 cut(s)	205
Ama87I	CYCGRG	3 cut(s)	248, 452, 1289
AoxI	GGCC	3 cut(s)	548, 1630, 1762
ApeKI	GCWGC	5 cut(s)	544, 623, 1535, 1919, 2428
ApoI	RAATTY	9 cut(s)	187, 271, 331, 688, 729, 1047, 1413, 1468, 2334
Asp700I	GAANNNNTTC	3 cut(s)	257, 1945, 2272
Asp718I	GGTACC	1 cut(s)	2214
AspLEI	GCGC	3 cut(s)	269, 577, 2197
AspS9I	GGNCC	2 cut(s)	1571, 1586
AsuC2I	CCSGG	1 cut(s)	1766
AsuHPI	GGTGA	2 cut(s)	493, 1195
AvaI	CYCGRG	3 cut(s)	248, 452, 1289
AvaII	GGWCC	2 cut(s)	1571, 1586
BanI	GGYRCC	2 cut(s)	574, 2214
BbvCI	CCTCAGC	1 cut(s)	1785
BbvI	GCAGC	4 cut(s)	531, 635, 1522, 1906
BccI	CCATC	5 cut(s)	149, 785, 922, 1865, 2226
BceAI	ACGGC	2 cut(s)	562, 829
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	4 cut(s)	200, 379, 1024, 1569
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	1766
BcoDI	GTCTC	5 cut(s)	45, 449, 1694, 1827, 2288
BcuI	ACTAGT	1 cut(s)	2003
BfmI	CTRYAG	1 cut(s)	1837
BfoI	RGCGCY	1 cut(s)	578
BfuAI	ACCTGC	2 cut(s)	611, 762
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	9 cut(s)	27, 545, 548, 624, 817, 1536, 1630, 1920, 2429
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	9 cut(s)	28, 546, 549, 625, 818, 1537, 1631, 1921, 2430
Bme1390I	CCNGG	5 cut(s)	200, 379, 1024, 1569, 1766
Bme18I	GGWCC	2 cut(s)	1571, 1586
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	3 cut(s)	248, 452, 1289
BmgT120I	GGNCC	2 cut(s)	1571, 1586
BmiI	GGNNCC	5 cut(s)	161, 576, 1556, 1588, 2216
BmrFI	CCNGG	5 cut(s)	200, 379, 1024, 1569, 1766
BmrI	ACTGGG	3 cut(s)	248, 663, 1699
BmsI	GCATC	4 cut(s)	531, 825, 1596, 1616
BmuI	ACTGGG	3 cut(s)	248, 663, 1699
BplI	GAGNNNNNCTC	6 cut(s)	1220, 1252, 1331, 1363, 1781, 1813
BpmI	CTGGAG	2 cut(s)	2270, 2342
Bpu10I	CCTNAGC	1 cut(s)	1785
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	1911
BpuMI	CCSGG	1 cut(s)	1766
Bsa29I	ATCGAT	1 cut(s)	942
BsaHI	GRCGYC	3 cut(s)	38, 575, 1833
BsaI	GGTCTC	1 cut(s)	1694
BsaJI	CCNNGG	2 cut(s)	198, 318
BsaWI	WCCGGW	1 cut(s)	1039
BsaXI	ACNNNNNCTCC	6 cut(s)	629, 659, 780, 810, 2243, 2273
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 954, 955, 1639, 1711, 2182
Bse118I	RCCGGY	2 cut(s)	263, 1197
Bse1I	ACTGG	6 cut(s)	187, 243, 669, 1694, 2092, 2325
Bse3DI	GCAATG	4 cut(s)	1615, 2024, 2083, 2350
BseBI	CCWGG	4 cut(s)	200, 379, 1024, 1569
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	2 cut(s)	198, 318
BseGI	GGATG	4 cut(s)	1012, 1631, 1669, 2089
BseLI	CCNNNNNNNGG	6 cut(s)	117, 954, 955, 1639, 1711, 2182
BseMI	GCAATG	4 cut(s)	1615, 2024, 2083, 2350
BseMII	CTCAG	8 cut(s)	56, 145, 226, 1103, 1593, 1776, 1928, 2379
BseNI	ACTGG	6 cut(s)	187, 243, 669, 1694, 2092, 2325
BseRI	GAGGAG	3 cut(s)	425, 1802, 2339
BseX3I	CGGCCG	1 cut(s)	548
BseXI	GCAGC	4 cut(s)	531, 635, 1522, 1906
Bsh1236I	CGCG	1 cut(s)	2197
Bsh1285I	CGRYCG	1 cut(s)	551
BshFI	GGCC	3 cut(s)	550, 1632, 1764
BshNI	GGYRCC	2 cut(s)	574, 2214
BshVI	ATCGAT	1 cut(s)	942
BsiEI	CGRYCG	1 cut(s)	551
BsiHKCI	CYCGRG	3 cut(s)	248, 452, 1289
BsiSI	CCGG	8 cut(s)	264, 482, 536, 1040, 1163, 1198, 1765, 2265
BslFI	GGGAC	7 cut(s)	446, 763, 1299, 1572, 1609, 1707, 2050
BslI	CCNNNNNNNGG	6 cut(s)	117, 954, 955, 1639, 1711, 2182
BsmAI	GTCTC	5 cut(s)	45, 449, 1694, 1827, 2288
BsmBI	CGTCTC	2 cut(s)	45, 2288
BsmFI	GGGAC	7 cut(s)	446, 763, 1299, 1572, 1609, 1707, 2050
BsmI	GAATGC	1 cut(s)	2385
BsnI	GGCC	3 cut(s)	550, 1632, 1764
Bso31I	GGTCTC	1 cut(s)	1694
BsoBI	CYCGRG	3 cut(s)	248, 452, 1289
Bsp143I	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
Bsp1720I	GCTNAGC	1 cut(s)	930
Bsp19I	CCATGG	1 cut(s)	318
BspANI	GGCC	3 cut(s)	550, 1632, 1764
BspCNI	CTCAG	8 cut(s)	55, 144, 225, 1102, 1594, 1777, 1929, 2380
BspDI	ATCGAT	1 cut(s)	942
BspFNI	CGCG	1 cut(s)	2197
BspLI	GGNNCC	5 cut(s)	161, 576, 1556, 1588, 2216
BspMAI	CTGCAG	1 cut(s)	1841
BspMI	ACCTGC	2 cut(s)	611, 762
BspPI	GGATC	3 cut(s)	12, 524, 1260
BspT107I	GGYRCC	2 cut(s)	574, 2214
BspTNI	GGTCTC	1 cut(s)	1694
BsrDI	GCAATG	4 cut(s)	1615, 2024, 2083, 2350
BsrFI	RCCGGY	2 cut(s)	263, 1197
BsrI	ACTGG	6 cut(s)	187, 243, 669, 1694, 2092, 2325
BssAI	RCCGGY	2 cut(s)	263, 1197
BssECI	CCNNGG	2 cut(s)	198, 318
BssMI	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
BssNI	GRCGYC	3 cut(s)	38, 575, 1833
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	200, 379, 1024, 1569
Bst4CI	ACNGT	7 cut(s)	567, 740, 872, 1081, 1096, 1478, 1724
Bst6I	CTCTTC	2 cut(s)	87, 2250
BstACI	GRCGYC	3 cut(s)	38, 575, 1833
BstAPI	GCANNNNNTGC	2 cut(s)	1416, 1626
BstC8I	GCNNGC	8 cut(s)	265, 405, 677, 927, 1837, 1933, 2385, 2398
BstDSI	CCRYGG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	1709
BstF5I	GGATG	4 cut(s)	1012, 1631, 1669, 2089
BstFNI	CGCG	1 cut(s)	2197
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	3 cut(s)	269, 577, 2197
BstKTI	GATC	6 cut(s)	7, 532, 727, 1219, 1255, 1794
BstMAI	GTCTC	5 cut(s)	45, 449, 1694, 1827, 2288
BstMBI	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
BstMCI	CGRYCG	1 cut(s)	551
BstNI	CCWGG	4 cut(s)	200, 379, 1024, 1569
BstNSI	RCATGY	1 cut(s)	1453
BstSCI	CCNGG	5 cut(s)	198, 377, 1022, 1567, 1764
BstSFI	CTRYAG	1 cut(s)	1837
BstUI	CGCG	1 cut(s)	2197
BstV1I	GCAGC	4 cut(s)	531, 635, 1522, 1906
BstZI	CGGCCG	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	942
BsuRI	GGCC	3 cut(s)	550, 1632, 1764
BsuTUI	ATCGAT	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	554
BtsCI	GGATG	4 cut(s)	1012, 1631, 1669, 2089
BtsIMutI	CAGTG	1 cut(s)	877
BveI	ACCTGC	2 cut(s)	611, 762
Cac8I	GCNNGC	8 cut(s)	265, 405, 677, 927, 1837, 1933, 2385, 2398
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	3 cut(s)	269, 577, 2197
Cfr10I	RCCGGY	2 cut(s)	263, 1197
Cfr13I	GGNCC	2 cut(s)	1571, 1586
ClaI	ATCGAT	1 cut(s)	942
CseI	GACGC	2 cut(s)	27, 1841
CsiI	ACCWGGT	2 cut(s)	377, 1567
Csp6I	GTAC	4 cut(s)	637, 1976, 2215, 2260
CviAII	CATG	6 cut(s)	145, 319, 1084, 1450, 1634, 2368
CviQI	GTAC	4 cut(s)	637, 1976, 2215, 2260
DinI	GGCGCC	1 cut(s)	576
DpnI	GATC	6 cut(s)	6, 531, 726, 1218, 1254, 1793
DpnII	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
DraI	TTTAAA	1 cut(s)	1759
DrdI	GACNNNNNNGTC	1 cut(s)	757
DriI	GACNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	548, 1630
EagI	CGGCCG	1 cut(s)	548
Eam1104I	CTCTTC	2 cut(s)	87, 2250
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	2 cut(s)	87, 2250
EciI	GGCGGA	1 cut(s)	431
EclXI	CGGCCG	1 cut(s)	548
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	1694
Eco32I	GATATC	1 cut(s)	1155
Eco47I	GGWCC	2 cut(s)	1571, 1586
Eco52I	CGGCCG	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	1187, 1812
Eco88I	CYCGRG	3 cut(s)	248, 452, 1289
EcoNI	CCTNNNNNAGG	1 cut(s)	1709
EcoO109I	RGGNCCY	2 cut(s)	1571, 1586
EcoRI	GAATTC	2 cut(s)	331, 1047
EcoRII	CCWGG	4 cut(s)	198, 377, 1022, 1567
EcoRV	GATATC	1 cut(s)	1155
EcoT14I	CCWWGG	1 cut(s)	318
EgeI	GGCGCC	1 cut(s)	576
EheI	GGCGCC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	2 cut(s)	45, 2288
FaeI	CATG	6 cut(s)	148, 322, 1087, 1453, 1637, 2371
FalI	AAGNNNNNCTT	2 cut(s)	1124, 1156
FaqI	GGGAC	7 cut(s)	446, 763, 1299, 1572, 1609, 1707, 2050
FatI	CATG	6 cut(s)	144, 318, 1083, 1449, 1633, 2367
FauI	CCCGC	1 cut(s)	812
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	9 cut(s)	27, 545, 548, 624, 817, 1536, 1630, 1920, 2429
FokI	GGATG	4 cut(s)	1019, 1638, 1676, 2096
Fsp4HI	GCNGC	9 cut(s)	27, 545, 548, 624, 817, 1536, 1630, 1920, 2429
GlaI	GCGC	3 cut(s)	268, 576, 2196
GluI	GCNGC	9 cut(s)	27, 545, 548, 624, 817, 1536, 1630, 1920, 2429
GsuI	CTGGAG	2 cut(s)	2270, 2342
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	550, 1632, 1764
HapII	CCGG	8 cut(s)	264, 482, 536, 1040, 1163, 1198, 1765, 2265
HgaI	GACGC	2 cut(s)	27, 1841
HhaI	GCGC	3 cut(s)	269, 577, 2197
Hin1I	GRCGYC	3 cut(s)	38, 575, 1833
Hin1II	CATG	6 cut(s)	148, 322, 1087, 1453, 1637, 2371
Hin6I	GCGC	3 cut(s)	267, 575, 2195
HinP1I	GCGC	3 cut(s)	267, 575, 2195
HindIII	AAGCTT	1 cut(s)	1802
HpaII	CCGG	8 cut(s)	264, 482, 536, 1040, 1163, 1198, 1765, 2265
HphI	GGTGA	2 cut(s)	493, 1195
Hpy166II	GTNNAC	2 cut(s)	1996, 2348
Hpy8I	GTNNAC	2 cut(s)	1996, 2348
Hpy99I	CGWCG	3 cut(s)	35, 697, 1754
HpyAV	CCTTC	9 cut(s)	247, 1165, 1199, 1203, 1243, 1328, 1836, 2204, 2304
HpyCH4III	ACNGT	7 cut(s)	567, 740, 872, 1081, 1096, 1478, 1724
Hsp92I	GRCGYC	3 cut(s)	38, 575, 1833
Hsp92II	CATG	6 cut(s)	148, 322, 1087, 1453, 1637, 2371
HspAI	GCGC	3 cut(s)	267, 575, 2195
KasI	GGCGCC	1 cut(s)	574
KpnI	GGTACC	1 cut(s)	2218
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
LmnI	GCTCC	4 cut(s)	202, 611, 1714, 2326
Lsp1109I	GCAGC	4 cut(s)	531, 635, 1522, 1906
LweI	GCATC	4 cut(s)	531, 825, 1596, 1616
MabI	ACCWGGT	2 cut(s)	377, 1567
MaeIII	GTNAC	4 cut(s)	52, 1075, 1403, 1529
MalI	GATC	6 cut(s)	6, 531, 726, 1218, 1254, 1793
MboI	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
MboII	GAAGA	8 cut(s)	104, 1043, 1156, 1180, 1187, 1744, 2267, 2326
MfeI	CAATTG	2 cut(s)	1256, 1814
Mly113I	GGCGCC	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	202, 1281
MmeI	TCCRAC	2 cut(s)	267, 2385
MreI	CGCCGGCG	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	3 cut(s)	257, 1945, 2272
MseI	TTAA	8 cut(s)	191, 363, 777, 1563, 1728, 1758, 1779, 1860
MspI	CCGG	8 cut(s)	264, 482, 536, 1040, 1163, 1198, 1765, 2265
MspR9I	CCNGG	5 cut(s)	200, 379, 1024, 1569, 1766
MunI	CAATTG	2 cut(s)	1256, 1814
Mva1269I	GAATGC	1 cut(s)	2385
MvaI	CCWGG	4 cut(s)	200, 379, 1024, 1569
MvnI	CGCG	1 cut(s)	2197
NaeI	GCCGGC	1 cut(s)	265
NarI	GGCGCC	1 cut(s)	575
NciI	CCSGG	1 cut(s)	1766
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	6 cut(s)	148, 322, 1087, 1453, 1637, 2371
NlaIV	GGNNCC	5 cut(s)	161, 576, 1556, 1588, 2216
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	3 cut(s)	52, 1403, 1529
NspI	RCATGY	1 cut(s)	1453
PaeR7I	CTCGAG	2 cut(s)	248, 452
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PctI	GAATGC	1 cut(s)	2385
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	3 cut(s)	257, 1945, 2272
PkrI	GCNGC	9 cut(s)	28, 546, 549, 625, 818, 1537, 1631, 1921, 2430
PleI	GAGTC	2 cut(s)	202, 1281
PluTI	GGCGCC	1 cut(s)	578
PpsI	GAGTC	2 cut(s)	202, 1281
PpuMI	RGGWCCY	2 cut(s)	1571, 1586
PsiI	TTATAA	1 cut(s)	735
Psp5II	RGGWCCY	2 cut(s)	1571, 1586
Psp6I	CCWGG	4 cut(s)	198, 377, 1022, 1567
PspGI	CCWGG	4 cut(s)	198, 377, 1022, 1567
PspN4I	GGNNCC	5 cut(s)	161, 576, 1556, 1588, 2216
PspPI	GGNCC	2 cut(s)	1571, 1586
PspPPI	RGGWCCY	2 cut(s)	1571, 1586
PstI	CTGCAG	1 cut(s)	1841
PstNI	CAGNNNCTG	1 cut(s)	205
RsaI	GTAC	4 cut(s)	638, 1977, 2216, 2261
RsaNI	GTAC	4 cut(s)	637, 1976, 2215, 2260
SaqAI	TTAA	8 cut(s)	191, 363, 777, 1563, 1728, 1758, 1779, 1860
SatI	GCNGC	9 cut(s)	27, 545, 548, 624, 817, 1536, 1630, 1920, 2429
Sau3AI	GATC	6 cut(s)	4, 529, 724, 1216, 1252, 1791
Sau96I	GGNCC	2 cut(s)	1571, 1586
SchI	GAGTC	2 cut(s)	202, 1281
ScrFI	CCNGG	5 cut(s)	200, 379, 1024, 1569, 1766
SexAI	ACCWGGT	2 cut(s)	377, 1567
SfaNI	GCATC	4 cut(s)	531, 825, 1596, 1616
SfcI	CTRYAG	1 cut(s)	1837
SfoI	GGCGCC	1 cut(s)	576
Sfr274I	CTCGAG	2 cut(s)	248, 452
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	1571, 1586
SlaI	CTCGAG	2 cut(s)	248, 452
SmlI	CTYRAG	3 cut(s)	248, 452, 1926
SmoI	CTYRAG	3 cut(s)	248, 452, 1926
SpeI	ACTAGT	1 cut(s)	2003
SspDI	GGCGCC	1 cut(s)	574
StyD4I	CCNGG	5 cut(s)	198, 377, 1022, 1567, 1764
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	7 cut(s)	567, 740, 872, 1081, 1096, 1478, 1724
TauI	GCSGC	4 cut(s)	29, 550, 819, 1632
Tru1I	TTAA	8 cut(s)	191, 363, 777, 1563, 1728, 1758, 1779, 1860
Tru9I	TTAA	8 cut(s)	191, 363, 777, 1563, 1728, 1758, 1779, 1860
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	3 cut(s)	52, 1403, 1529
TseI	GCWGC	5 cut(s)	544, 623, 1535, 1919, 2428
Tsp45I	GTSAC	3 cut(s)	52, 1403, 1529
TspDTI	ATGAA	6 cut(s)	618, 755, 1604, 1834, 2205, 2384
TspGWI	ACGGA	3 cut(s)	710, 2245, 2312
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	1571, 1586
XagI	CCTNNNNNAGG	1 cut(s)	1709
XapI	RAATTY	9 cut(s)	187, 271, 331, 688, 729, 1047, 1413, 1468, 2334
XbaI	TCTAGA	2 cut(s)	962, 1034
XceI	RCATGY	1 cut(s)	1453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1912
XhoI	CTCGAG	2 cut(s)	248, 452
XmnI	GAANNNNTTC	3 cut(s)	257, 1945, 2272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.