Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0015295

Physical Location & Seq

Genomic Coordinates Reverse (-)

69717471 .. 69721486

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG390900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGTTTGGTGACAAGGACCGCAGCAGTGCTCTGCTGGCCGCCGGAGACGAGGCTTCTCAGAGCAAGGTGACGCGCCACGTCTCCAAGCAAAGCAAGGACTACAACATCAACCACCCGGCAAAGAAACCGGGTCTTAATTTTCTGAGGGATTCAGGCTCTGATGGGTTTCAATCAAAGCCTTGCTCTAATTTTGGGTCTCAGGAGCTGACCCTGAGCTATCTCTGCGATAATTCCAAACTGGGTTTTCTGGACAAAGAGTTTTCCGGCAAGAATCTGTTGACCTCTTTGGAGAAAGGTAAGGAAATCTTGGTTCCCGAGAATTCAAGCCAAGATCACAAGTGGGTTGAGAGGGATTTCCTCAATTTAAACGAGACCAGGCTCAATTCCTCAAAACGTGAGCTTGGTGACGATGTTGAGAGAGACAGTAGGGAGAAGAAGCCAAAGCTTGAGACTTTGAATCTCTCTCTGGCCTTGCCTCAGGTCTCGCTCTCTCTCACTGCCTCAAACGCTTTGCAAAACGGTGAGCCTTCCATGGTGAGGCCCAGGAGTACCATGGCGCCTTCCACCAATACCTTAACCACTTATTCCAATGATTACACAGCTGCTTCTTTATCCTACTCTTATTCCCATCCCTATTCACACAATCCAAGTTGCTCGCTGACTCGAAATTCGACAGAGAATAATTTCGAGTATTCTGTTGGCAAGGATGATCATATTTGGAACTGTGGGGAGGGCACTAATGGTTCTGTTCATAGCAGGTTCAAGCCGATTGGGGATGGAGTTGGTTTGGCAAATCCTGGTGGGATTCTGTCGATGATGCAGAGTAATAATCGAAAGGATTCAGGTACTAATAGTCTTTATAGGACAACTAGCTCTGATAATAACCAGTCTTTTTTTCCATCGGAGTTACCTGCTAAGCCTAGAATTGATACTCATTCTGGAGATTCGAGAGGGAGAGGTTCGGACAGTTTGAGAGGTTTGGAGGGTGGAGATGGTGGTGGTGGGAGAGTTAGGAAGTTATCTAGGCCGGAGAGAATTCTTCGCGAAATTGTTTCCGAGTCTATACCTGTCATGGCTCCGGTGGTTCAGGAGCTTCATGAGGAAACACTTTTATCGACTAATGAGTACTTGAGGAATCTGATTTCAATGCCTGAGAAGAAAGAGGAGTTGGTGAGCCTTCAGAAAAGGCTTGAGAGGAGGTCTGATCTTACAAAGGAGAATCTGTCCAAGTGTCAGAAGGATCAATTGGAGATTCTGGTTGCTGTGAAAATGGGGCTTGCGAGCTTTGTATCTGGGAAAAACCGCCTTTCGGCAACTGAGTTGGTGGAGACTTTCTTGTTTATGAGATGTAGGAACGTGAATTGCAAGACTTTGTTGCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAATAAGGGCTTTTGTAGTTCATGTATGTGTCCTGTTTGTTTGAATTTTGACTGTGCTAGTAACACTTGTAGTTGGGTTGGATGTGATGTTTGTTCGCATTGGTGCCATGCTGCTTGTGGTATTCAGAAGAATCTCATTAAGCCAGGTCCGAGCTTGAAGGGGCCTTCTGGAACAACGGAGATGCAATTCCATTGCATTGGGTGCAGTCATGCTTCGGAAATGTTTGGGTTTGTTAAGGATGTGTTTCTGTGCTGTGCAAAGGACTGGGGACTAGAAACCCTTGTGAAGGAGCTTGACTGTGTTAAGCAGATTTTTAGGGGAAGTGAAGATTTTAAAGGCCGGGAACTGCATATCAAGGCTGAGGAGATTATCTCCAAGCTAGGAAGCCAAGTGATGTCTCCTTCAGATGCCTGCAATTTTATTATCCAGTTTTTCAACTATACAGATGGAGTGTCAGAATATCCAGCGTCTAGTATAACCACATCCTCAACAAAGGAGTTGGCAACTCCTCAAACCAGCCTTAGGAAAGAAGCAACCCTTTTTTCACAACCTGCTTCTCTACCTCCAAAATATGCTGCTTACAACACAAGTTCCAGTGTACAATCTGATTTGTTGTCAAATGATCTCCATCAGATTGATCTAAAATCTTCCCTCATAAGCACTGAGGATGAGTTCCGTTTTGGAACAGTACCGAAAATAGAAGGGTTTGACAGTTTGGAAAGCATGGTGAGGATAAAGCAAGCTGAAGCTAGAATGTACCAGAGCAAGGCGGACGAAGCACGGAGAGAGGCAGAAGGTTACCAGCAGATGATTCGGGAAAATACAGAGAAGGTGGAGGAAGAGTATGCTGGAAAGTTTTCCAAATTGTGTCTGCAAGAGACGGAGGAAAAGCGTAGGAAGAAACTGGAGGAGCTCAAAGTTTTGGAAGGTTCACATGGTGATTATTACAACATGAAGACTAGGATGCAAGCCGAAATTGCTGGCTTGTTGGCAAAAATGGAAGCGACAAAGCAGCAACAACGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009880 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0030154 GO:0032501 GO:0032502 GO:0045165 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

813

Amino Acids

90.36

Weight (kDa)

6.4

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	450 - 573	4.8e-36	PHD - plant homeodomain finger protein
Oberon_cc	PF16312	676 - 801	4.9e-43	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14740
fragaria_vesca	FvH4_4g33110
malus_domestica	MD13G1016800.v1.1 MD16G1014700.v1.1
prunus_persica	Prupe.1G336600_v2.0.a1
pyrus_communis	pycom16g01350
rosa_chinensis	RchiOBHm_Chr4g0442161
rosa_laevigata	RLG00000006035
rosa_multiflora	Rmu_sc0010284.1_g000009
rosa_roxburghii	Rroxscaffold_5G00383070
rosa_rugosa	Rorug04G0339300
rosa_samantha	Rh4AG390900 Rh4BG404500 Rh4CG419500 Rh4DG397400
rosa_wichuraiana	Rw4G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	747, 919, 1972
AccB1I	GGYRCC	2 cut(s)	556, 1515
AccII	CGCG	2 cut(s)	73, 1044
AciI	CCGC	4 cut(s)	19, 39, 1303, 2183
AclWI	GGATC	1 cut(s)	1248
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	4 cut(s)	319, 667, 1035, 1456
AcuI	CTGAAG	3 cut(s)	1163, 1800, 2178
AcyI	GRCGYC	1 cut(s)	557
AdeI	CACNNNGTG	1 cut(s)	2351
AfaI	GTAC	6 cut(s)	550, 847, 1127, 2013, 2103, 2171
AfiI	CCNNNNNNNGG	5 cut(s)	537, 1309, 1699, 1935, 2179
AgsI	TTSAA	8 cut(s)	170, 324, 457, 763, 1146, 1456, 1570, 1849
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	4 cut(s)	374, 542, 796, 1555
AjuI	GAANNNNNNNTTGG	4 cut(s)	1151, 1183, 1229, 1261
Alw21I	GWGCWC	2 cut(s)	31, 2328
AlwI	GGATC	1 cut(s)	1248
AlwNI	CAGNNNCTG	2 cut(s)	158, 205
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	6 cut(s)	36, 468, 539, 1025, 1574, 1750
ApeKI	GCWGC	5 cut(s)	21, 602, 1523, 1988, 2425
ApoI	RAATTY	4 cut(s)	319, 667, 1035, 1456
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
Asp700I	GAANNNNTTC	3 cut(s)	683, 838, 2269
AspLEI	GCGC	2 cut(s)	75, 559
AspS9I	GGNCC	4 cut(s)	16, 540, 1559, 1574
AsuC2I	CCSGG	3 cut(s)	116, 129, 1754
AsuHPI	GGTGA	8 cut(s)	20, 79, 416, 533, 547, 1183, 2152, 2363
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	16, 1559
AxyI	CCTNAGG	2 cut(s)	477, 1934
BaeGI	GKGCMC	1 cut(s)	737
BanI	GGYRCC	2 cut(s)	556, 1515
BanII	GRGCYC	1 cut(s)	2328
BbsI	GAAGAC	1 cut(s)	2375
Bbv12I	GWGCWC	2 cut(s)	31, 2328
BbvCI	CCTCAGC	1 cut(s)	1773
BbvI	GCAGC	5 cut(s)	33, 589, 1510, 1975, 2437
BccI	CCATC	7 cut(s)	155, 636, 770, 907, 986, 1853, 2049
BcgI	CGANNNNNNTGC	2 cut(s)	2207, 2241
BciT130I	CCWGG	4 cut(s)	376, 544, 798, 1557
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	3 cut(s)	116, 129, 1754
BfaI	CTAG	9 cut(s)	870, 921, 1023, 1470, 1685, 1793, 1884, 2163, 2373
BfoI	RGCGCY	1 cut(s)	560
BfuAI	ACCTGC	3 cut(s)	747, 919, 1972
BisI	GCNGC	6 cut(s)	22, 39, 603, 1524, 1989, 2426
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	6 cut(s)	23, 40, 604, 1525, 1990, 2427
BmcAI	AGTACT	1 cut(s)	1127
Bme1390I	CCNGG	7 cut(s)	116, 129, 376, 544, 798, 1557, 1754
Bme18I	GGWCC	2 cut(s)	16, 1559
BmeT110I	CYCGRG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	4 cut(s)	16, 540, 1559, 1574
BmiI	GGNNCC	5 cut(s)	312, 558, 1077, 1517, 1575
BmrFI	CCNGG	7 cut(s)	116, 129, 376, 544, 798, 1557, 1754
BmrI	ACTGGG	2 cut(s)	248, 1687
BmsI	GCATC	4 cut(s)	807, 1584, 1810, 2367
BmuI	ACTGGG	2 cut(s)	248, 1687
BpiI	GAAGAC	1 cut(s)	2375
BplI	GAGNNNNNCTC	2 cut(s)	1769, 1801
BpmI	CTGGAG	2 cut(s)	960, 2339
Bpu10I	CCTNAGC	3 cut(s)	212, 1408, 1773
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	3 cut(s)	467, 1150, 1211
BpuMI	CCSGG	3 cut(s)	116, 129, 1754
BsaBI	GATNNNNATC	1 cut(s)	2040
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	3 cut(s)	201, 365, 487
BsaJI	CCNNGG	3 cut(s)	531, 542, 552
BsaWI	WCCGGW	1 cut(s)	1078
BsaXI	ACNNNNNCTCC	4 cut(s)	1208, 1238, 2240, 2270
Bsc4I	CCNNNNNNNGG	5 cut(s)	537, 1309, 1699, 1935, 2179
Bse1I	ACTGG	6 cut(s)	243, 886, 1682, 1840, 2007, 2322
Bse21I	CCTNAGG	2 cut(s)	477, 1934
Bse3DI	GCAATG	1 cut(s)	1603
Bse8I	GATNNNNATC	1 cut(s)	2040
BseBI	CCWGG	4 cut(s)	376, 544, 798, 1557
BseDI	CCNNGG	3 cut(s)	531, 542, 552
BseGI	GGATG	8 cut(s)	628, 712, 781, 1499, 1657, 1895, 2086, 2382
BseJI	GATNNNNATC	1 cut(s)	2040
BseLI	CCNNNNNNNGG	5 cut(s)	537, 1309, 1699, 1935, 2179
BseMI	GCAATG	1 cut(s)	1603
BseNI	ACTGG	6 cut(s)	243, 886, 1682, 1840, 2007, 2322
BseRI	GAGGAG	5 cut(s)	1178, 1210, 1790, 1911, 2336
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	5 cut(s)	33, 589, 1510, 1975, 2437
BsgI	GTGCAG	1 cut(s)	1636
Bsh1236I	CGCG	2 cut(s)	73, 1044
BshFI	GGCC	6 cut(s)	38, 470, 541, 1027, 1576, 1752
BshNI	GGYRCC	2 cut(s)	556, 1515
BsiHKAI	GWGCWC	2 cut(s)	31, 2328
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	7 cut(s)	42, 116, 128, 264, 1028, 1079, 1753
BslFI	GGGAC	1 cut(s)	1695
BslI	CCNNNNNNNGG	5 cut(s)	537, 1309, 1699, 1935, 2179
BsmBI	CGTCTC	3 cut(s)	39, 85, 2285
BsmFI	GGGAC	1 cut(s)	1695
BsnI	GGCC	6 cut(s)	38, 470, 541, 1027, 1576, 1752
Bso31I	GGTCTC	3 cut(s)	201, 365, 487
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	31, 737, 2328
Bsp1407I	TGTACA	1 cut(s)	2011
Bsp143I	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	2 cut(s)	531, 552
Bsp68I	TCGCGA	1 cut(s)	1044
BspACI	CCGC	4 cut(s)	19, 39, 1303, 2183
BspANI	GGCC	6 cut(s)	38, 470, 541, 1027, 1576, 1752
BspFNI	CGCG	2 cut(s)	73, 1044
BspHI	TCATGA	1 cut(s)	1096
BspLI	GGNNCC	5 cut(s)	312, 558, 1077, 1517, 1575
BspMI	ACCTGC	3 cut(s)	747, 919, 1972
BspPI	GGATC	1 cut(s)	1248
BspT107I	GGYRCC	2 cut(s)	556, 1515
BspTNI	GGTCTC	3 cut(s)	201, 365, 487
BsrDI	GCAATG	1 cut(s)	1603
BsrGI	TGTACA	1 cut(s)	2011
BsrI	ACTGG	6 cut(s)	243, 886, 1682, 1840, 2007, 2322
BssECI	CCNNGG	3 cut(s)	531, 542, 552
BssMI	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	2 cut(s)	531, 552
Bst2UI	CCWGG	4 cut(s)	376, 544, 798, 1557
Bst4CI	ACNGT	8 cut(s)	425, 521, 725, 968, 1466, 1712, 2101, 2126
Bst6I	CTCTTC	1 cut(s)	2247
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	2 cut(s)	1404, 1614
BstAUI	TGTACA	1 cut(s)	2011
BstC8I	GCNNGC	8 cut(s)	36, 656, 1278, 1282, 1825, 2154, 2382, 2395
BstDSI	CCRYGG	2 cut(s)	531, 552
BstEII	GGTNACC	1 cut(s)	2210
BstENI	CCTNNNNNAGG	1 cut(s)	1697
BstF5I	GGATG	8 cut(s)	628, 712, 781, 1499, 1657, 1895, 2086, 2382
BstFNI	CGCG	2 cut(s)	73, 1044
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	75, 559
BstKTI	GATC	6 cut(s)	334, 712, 1207, 1243, 2038, 2053
BstMBI	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 222, 506, 1404, 1614, 2189, 2390
BstNI	CCWGG	4 cut(s)	376, 544, 798, 1557
BstPI	GGTNACC	1 cut(s)	2210
BstSCI	CCNGG	7 cut(s)	114, 127, 374, 542, 796, 1555, 1752
BstSLI	GKGCMC	1 cut(s)	737
BstUI	CGCG	2 cut(s)	73, 1044
BstV1I	GCAGC	5 cut(s)	33, 589, 1510, 1975, 2437
BstV2I	GAAGAC	1 cut(s)	2375
BstXI	CCANNNNNNTGG	1 cut(s)	1610
Bsu36I	CCTNAGG	2 cut(s)	477, 1934
BsuRI	GGCC	6 cut(s)	38, 470, 541, 1027, 1576, 1752
BtgI	CCRYGG	2 cut(s)	531, 552
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	8 cut(s)	628, 712, 781, 1499, 1657, 1895, 2086, 2382
BtsI	GCAGTG	2 cut(s)	31, 495
BtsIMutI	CAGTG	4 cut(s)	31, 495, 2014, 2073
BtuMI	TCGCGA	1 cut(s)	1044
BveI	ACCTGC	3 cut(s)	747, 919, 1972
Cac8I	GCNNGC	8 cut(s)	36, 656, 1278, 1282, 1825, 2154, 2382, 2395
CaiI	CAGNNNCTG	2 cut(s)	158, 205
CciI	TCATGA	1 cut(s)	1096
CfoI	GCGC	2 cut(s)	75, 559
Cfr13I	GGNCC	4 cut(s)	16, 540, 1559, 1574
CseI	GACGC	2 cut(s)	79, 1869
Csp6I	GTAC	6 cut(s)	549, 846, 1126, 2012, 2102, 2170
CviQI	GTAC	6 cut(s)	549, 846, 1126, 2012, 2102, 2170
DinI	GGCGCC	1 cut(s)	558
DpnI	GATC	6 cut(s)	333, 711, 1206, 1242, 2037, 2052
DpnII	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
DraI	TTTAAA	2 cut(s)	366, 1747
DraIII	CACNNNGTG	1 cut(s)	2351
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	2247
EarI	CTCTTC	1 cut(s)	2247
EciI	GGCGGA	1 cut(s)	2198
Ecl136II	GAGCTC	1 cut(s)	2326
Eco130I	CCWWGG	2 cut(s)	531, 552
Eco24I	GRGCYC	1 cut(s)	2328
Eco31I	GGTCTC	3 cut(s)	201, 365, 487
Eco47I	GGWCC	2 cut(s)	16, 1559
Eco53kI	GAGCTC	1 cut(s)	2326
Eco57I	CTGAAG	3 cut(s)	1163, 1800, 2178
Eco81I	CCTNAGG	2 cut(s)	477, 1934
Eco88I	CYCGRG	1 cut(s)	314
Eco91I	GGTNACC	1 cut(s)	2210
EcoICRI	GAGCTC	1 cut(s)	2326
EcoNI	CCTNNNNNAGG	1 cut(s)	1697
EcoO109I	RGGNCCY	1 cut(s)	1574
EcoO65I	GGTNACC	1 cut(s)	2210
EcoRI	GAATTC	2 cut(s)	319, 1035
EcoRII	CCWGG	4 cut(s)	374, 542, 796, 1555
EcoT14I	CCWWGG	2 cut(s)	531, 552
EcoT38I	GRGCYC	1 cut(s)	2328
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	2 cut(s)	531, 552
Esp3I	CGTCTC	3 cut(s)	39, 85, 2285
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 1935, 1967
FaqI	GGGAC	1 cut(s)	1695
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	6 cut(s)	22, 39, 603, 1524, 1989, 2426
FokI	GGATG	8 cut(s)	615, 719, 788, 1506, 1664, 1882, 2093, 2389
FriOI	GRGCYC	1 cut(s)	2328
Fsp4HI	GCNGC	6 cut(s)	22, 39, 603, 1524, 1989, 2426
FspBI	CTAG	9 cut(s)	870, 921, 1023, 1470, 1685, 1793, 1884, 2163, 2373
GlaI	GCGC	2 cut(s)	74, 558
GluI	GCNGC	6 cut(s)	22, 39, 603, 1524, 1989, 2426
GsuI	CTGGAG	2 cut(s)	960, 2339
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	6 cut(s)	38, 470, 541, 1027, 1576, 1752
HapII	CCGG	7 cut(s)	42, 116, 128, 264, 1028, 1079, 1753
HgaI	GACGC	2 cut(s)	79, 1869
HhaI	GCGC	2 cut(s)	75, 559
Hin1I	GRCGYC	1 cut(s)	557
Hin6I	GCGC	2 cut(s)	73, 557
HinP1I	GCGC	2 cut(s)	73, 557
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	443
HpaII	CCGG	7 cut(s)	42, 116, 128, 264, 1028, 1079, 1753
HphI	GGTGA	8 cut(s)	20, 79, 416, 533, 547, 1183, 2152, 2363
Hpy166II	GTNNAC	3 cut(s)	279, 2012, 2345
Hpy8I	GTNNAC	3 cut(s)	279, 2012, 2345
HpyCH4III	ACNGT	8 cut(s)	425, 521, 725, 968, 1466, 1712, 2101, 2126
HpyCH4IV	ACGT	3 cut(s)	78, 394, 1356
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 222, 506, 1404, 1614, 2189, 2390
HpySE526I	ACGT	3 cut(s)	78, 394, 1356
Hsp92I	GRCGYC	1 cut(s)	557
HspAI	GCGC	2 cut(s)	73, 557
KasI	GGCGCC	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
LmnI	GCTCC	5 cut(s)	202, 1081, 1090, 1702, 2323
Lsp1109I	GCAGC	5 cut(s)	33, 589, 1510, 1975, 2437
LweI	GCATC	4 cut(s)	807, 1584, 1810, 2367
MaeI	CTAG	9 cut(s)	870, 921, 1023, 1470, 1685, 1793, 1884, 2163, 2373
MaeII	ACGT	3 cut(s)	78, 394, 1356
MaeIII	GTNAC	7 cut(s)	8, 67, 404, 906, 1391, 1472, 2210
MalI	GATC	6 cut(s)	333, 711, 1206, 1242, 2037, 2052
MboI	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
MboII	GAAGA	9 cut(s)	445, 1031, 1168, 1552, 1751, 2052, 2264, 2323, 2380
MfeI	CAATTG	1 cut(s)	1244
MhlI	GDGCHC	3 cut(s)	31, 737, 2328
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	2 cut(s)	655, 1067
MmeI	TCCRAC	1 cut(s)	1471
MroXI	GAANNNNTTC	3 cut(s)	683, 838, 2269
MseI	TTAA	7 cut(s)	135, 365, 575, 1551, 1647, 1716, 1746
MslI	CAYNNNNRTG	1 cut(s)	1438
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	7 cut(s)	42, 116, 128, 264, 1028, 1079, 1753
MspR9I	CCNGG	7 cut(s)	116, 129, 376, 544, 798, 1557, 1754
MunI	CAATTG	1 cut(s)	1244
MvaI	CCWGG	4 cut(s)	376, 544, 798, 1557
MvnI	CGCG	2 cut(s)	73, 1044
MwoI	GCNNNNNNNGC	7 cut(s)	35, 222, 506, 1404, 1614, 2189, 2390
NarI	GGCGCC	1 cut(s)	557
NciI	CCSGG	3 cut(s)	116, 129, 1754
NcoI	CCATGG	2 cut(s)	531, 552
NdeII	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
NlaIV	GGNNCC	5 cut(s)	312, 558, 1077, 1517, 1575
NmuCI	GTSAC	4 cut(s)	8, 67, 404, 1391
NruI	TCGCGA	1 cut(s)	1044
PagI	TCATGA	1 cut(s)	1096
PdmI	GAANNNNTTC	3 cut(s)	683, 838, 2269
PkrI	GCNGC	6 cut(s)	23, 40, 604, 1525, 1990, 2427
PleI	GAGTC	2 cut(s)	655, 1066
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	2 cut(s)	655, 1066
Psp124BI	GAGCTC	1 cut(s)	2328
Psp6I	CCWGG	4 cut(s)	374, 542, 796, 1555
PspEI	GGTNACC	1 cut(s)	2210
PspGI	CCWGG	4 cut(s)	374, 542, 796, 1555
PspN4I	GGNNCC	5 cut(s)	312, 558, 1077, 1517, 1575
PspPI	GGNCC	4 cut(s)	16, 540, 1559, 1574
PstNI	CAGNNNCTG	2 cut(s)	158, 205
PvuII	CAGCTG	1 cut(s)	602
RruI	TCGCGA	1 cut(s)	1044
RsaI	GTAC	6 cut(s)	550, 847, 1127, 2013, 2103, 2171
RsaNI	GTAC	6 cut(s)	549, 846, 1126, 2012, 2102, 2170
RseI	CAYNNNNRTG	1 cut(s)	1438
SacI	GAGCTC	1 cut(s)	2328
SaqAI	TTAA	7 cut(s)	135, 365, 575, 1551, 1647, 1716, 1746
SatI	GCNGC	6 cut(s)	22, 39, 603, 1524, 1989, 2426
Sau3AI	GATC	6 cut(s)	331, 709, 1204, 1240, 2035, 2050
Sau96I	GGNCC	4 cut(s)	16, 540, 1559, 1574
ScaI	AGTACT	1 cut(s)	1127
SchI	GAGTC	2 cut(s)	655, 1067
ScrFI	CCNGG	7 cut(s)	116, 129, 376, 544, 798, 1557, 1754
SduI	GDGCHC	3 cut(s)	31, 737, 2328
SfaNI	GCATC	4 cut(s)	807, 1584, 1810, 2367
SfoI	GGCGCC	1 cut(s)	558
SinI	GGWCC	2 cut(s)	16, 1559
SmiMI	CAYNNNNRTG	1 cut(s)	1438
SmlI	CTYRAG	3 cut(s)	446, 1129, 1190
SmoI	CTYRAG	3 cut(s)	446, 1129, 1190
SsiI	CCGC	4 cut(s)	19, 39, 1303, 2183
SspDI	GGCGCC	1 cut(s)	556
SspMI	CTAG	9 cut(s)	870, 921, 1023, 1470, 1685, 1793, 1884, 2163, 2373
SstI	GAGCTC	1 cut(s)	2328
StyD4I	CCNGG	7 cut(s)	114, 127, 374, 542, 796, 1555, 1752
StyI	CCWWGG	2 cut(s)	531, 552
TaaI	ACNGT	8 cut(s)	425, 521, 725, 968, 1466, 1712, 2101, 2126
TaiI	ACGT	3 cut(s)	81, 397, 1359
TaqI	TCGA	7 cut(s)	664, 671, 687, 812, 832, 947, 1115
TatI	WGTACW	2 cut(s)	1125, 2011
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	7 cut(s)	135, 365, 575, 1551, 1647, 1716, 1746
Tru9I	TTAA	7 cut(s)	135, 365, 575, 1551, 1647, 1716, 1746
TscAI	CASTG	4 cut(s)	31, 502, 2014, 2080
TseFI	GTSAC	4 cut(s)	8, 67, 404, 1391
TseI	GCWGC	5 cut(s)	21, 602, 1523, 1988, 2425
Tsp45I	GTSAC	4 cut(s)	8, 67, 404, 1391
TspDTI	ATGAA	4 cut(s)	740, 1085, 1422, 2381
TspGWI	ACGGA	4 cut(s)	1604, 2078, 2209, 2309
TspRI	CASTG	4 cut(s)	31, 502, 2014, 2080
VpaK11BI	GGWCC	2 cut(s)	16, 1559
XagI	CCTNNNNNAGG	1 cut(s)	1697
XapI	RAATTY	4 cut(s)	319, 667, 1035, 1456
XcmI	CCANNNNNNNNNTGG	2 cut(s)	550, 1526
XmnI	GAANNNNTTC	3 cut(s)	683, 838, 2269
XspI	CTAG	9 cut(s)	870, 921, 1023, 1470, 1685, 1793, 1884, 2163, 2373
ZrmI	AGTACT	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.