Rroxscaffold_5G00383070

OBERON 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015295
Physical Location & Seq
Reverse (-)
62759964 .. 62763747
3784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383070.1

Sequence Viewer

Length: 2436 bp
ATGTTTGGTGACAAGGACCGCAGTAGTCCTCTGCTGGCCGCCGGAGACGAGGCTTCTCAGAGCAAGGTGACGCGCCACGTCTCCAAGCAAAGCAAGGACTACAACAACCCGGAAAAGAAAGCGGGTCTTAATTTTCTGAGGGATTCAGGCTCTGATGGGTTTCAATCAAAGCCTTGCTCTAATTTTGGGTCTCAGGAGCTGACCCTGAGCTATCTCTGTGATAATTCCAAGCTGGGTTTTCTGGAGAAAGAGTTTTCCGGCAAGAATCTGTTGACTTCTCTGGAGAAAGGTAAGGAAATCGTGGTTCCCGAGAATTCAAGCCAAGATCACAAGTGGGTTGAGAGGGATTTCCTCAATTTAAACGAGACCAGGCTCAATTCCTCAAAACGTGAGCTCGGGGAAGATGTTGAGAGGGACAATAGGGAGAAGAAGCCGAAGCTTGAGACTTTGAATCTCTCTCTGGCCTTGCCTCAGGTCTCACTCTCTCTCACTGCCTCAAACGCTTTGCAAAACGGTGAGCCTTCTATGGTGAGGCCCAGGAGCACCATGGCGCCTTCCACCAATACGTTAACCACTTATTCCAATGATTACACTGCTGCTTCTTTATCTTACTCCTATTCGCATCCCTATTCACACAATCCAAGTTGCTCGCTGACTCGAAATTCGACAGAGAATAATTTCGAGTATTCTGTTGGGAAGGATGATCATATTTGGAACTGTGGGGAGGGCACTAATGGTTCTGTTCATAGCAGGTTCAAGCCGATTGGGGATGGAGTTGGTTTGGCAAATCCTGGTGGGATTCTGTCGATGATGCAGAGTAATAATCGAAGGGATTCAGGTACTAATAGTCTTTATAGGGCAGCTAGCTCTGATAATAACCAGTCTTTTTTTCCATCCGAGTTGCCTGCTAAGCCTAGAATTGATACTCATTCTGGAGATTCGAGAGGGAGAGGTTCGGACAGTTTGAGAGCTTTGGAGGGTGGAGATGGTGGTGGTGGGAGAGTTAGGAAGTTATCTAGGCCGGAGAGAATTCTTCGCGAAATTGTTTCCGACTCTATACCTGTCATGGCTCAGGTGGTTCAGGAGCTTCCTGAGGAAACACTTTTATCGACTAACGAGTACTTGAGGAATCTGATTTCAATGCCTGAGAAGAAAGAGGAGTTGGTTAGCCTTCAGAAAAGGCTTGAGAGGAGGTCTGATCTTACAAAGGAGAATCTGTCAAAGTGTCAGAAGGATCAATTGGAGATTCTGGTTGCGGTGAAAATGGGGCTTGCGAGCTTTGTATCTGGGAAAAACCGCCTTTCGGCAACTGAGTTGGTGGAGACTTTCTTGTTTATGAGATGTAGGAACGTGAATTGCAAGAATTTGTTGCCTGTTGATGATTGTGACTGCAAGATTTGCTTAGGAAATAAGGGGTTTTGTAGTTCATGTATGTGTCCTGTTTGTTTGAATTTTGACTGTGCTAGTAACACTTGTAGCTGGGTTGGATGTGATGTTTGTTCGCATTGGTGCCATGCTGCTTGTGGTATTCAGAAGAATCTCATTAAGCCAGGTCCGAGCTTGAAGGGGCCTTCTGGGACAACGGAGATGCAATTCCATTGCATTGGATGCAGTCATGCTTCGGAAATGTTTGGGTTTGTTAAGGATGTGTTTCTGTGCTGTGCAAAGGACTGGGGACTAGAAACTCTTGTGAAGGAGCTTGACTGTGTTAAGCAGATTTTTAGGGGAAGTGAAGATTTTAAAGGCGGGGAACTGCATGTCAAGGCTGAGGAGATTATCTCCAAGCTAGGAAGCCAAGTGATGTCTCCTTCAGATGCCTGCAATTTTATTATCCAGTTTTTCAACTATACAGATGGAGTGTCAGAATATCCAGCTTCTAGTTTAACCACATCCTCAACAAAGGAGTTGGCAACTCCTCAAACCAGCCTTAGGAAAGAAGCAACCCTTTTTTCACAACCTGCTTCTCTACCTCCAAAATATGCTGCTTACAACACAAGTTCCAGTGTACAATCTGATTTATTGTCAAATGATCTCCATCAGATTGACCTAAAATCTTCCCTCATAAGCACTGAGGATGAGTTCCGTTTTGGAACAGTACCGAAAATAGAAGGGTTTGACAGTTTGGAAAGCATGGTGAGGATAAAGCAAGCTGAAGCTAGAATGTACCAGAGCAAGGCAGACGAAGCACGGAGAGAGGCAGAAGGTTACCGGCAGATGATTCGGGAAAATACAGAGAAGGTGGAGGAAGAGTATGCTGGAAAGTTTTCCGGATTGTGTCTGCAAGAGACGGAGGAAAAGCGAAGGAAGAAACTGGAGGAGCTCAAAGTTTTGGAAGGTTCACATTGTGATTATTACAACATGAAGACTAGGATGCAAGCCGAAATCGCTGGCTTGTTGGCAAAAATGGAAGCGACAAAGCAGCAACAACGGGTGTAG

Protein Analysis

811

Amino Acids

90.1

Weight (kDa)

6.16

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_Oberon PF07227 448 - 571 1.2e-35 PHD - plant homeodomain finger protein
Oberon_cc PF16312 674 - 799 2.4e-42 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14740
fragaria_vesca FvH4_4g33110
malus_domestica MD13G1016800.v1.1 MD16G1014700.v1.1
prunus_persica Prupe.1G336600_v2.0.a1
pyrus_communis pycom16g01350
rosa_chinensis RchiOBHm_Chr4g0442161
rosa_laevigata RLG00000006035
rosa_multiflora Rmu_sc0010284.1_g000009
rosa_roxburghii Rroxscaffold_5G00383070
rosa_rugosa Rorug04G0339300
rosa_samantha Rh4AG390900 Rh4BG404500 Rh4CG419500 Rh4DG397400
rosa_wichuraiana Rw4G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 741, 1966
AccB1I GGYRCC 2 cut(s) 550, 1509
AccII CGCG 2 cut(s) 73, 1038
AccIII TCCGGA 1 cut(s) 2267
AciI CCGC 6 cut(s) 19, 39, 122, 1256, 1297, 1746
AclWI GGATC 1 cut(s) 1242
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 5 cut(s) 313, 661, 1029, 1363, 1450
AcuI CTGAAG 3 cut(s) 1157, 1794, 2172
AcyI GRCGYC 1 cut(s) 551
AdeI CACNNNGTG 1 cut(s) 2345
AfaI GTAC 5 cut(s) 841, 1121, 2007, 2097, 2165
AfiI CCNNNNNNNGG 3 cut(s) 1303, 1929, 2173
AgsI TTSAA 8 cut(s) 164, 318, 451, 757, 1140, 1450, 1564, 1843
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 4 cut(s) 368, 536, 790, 1549
AjuI GAANNNNNNNTTGG 4 cut(s) 1145, 1177, 1223, 1255
Alw21I GWGCWC 3 cut(s) 396, 545, 2322
Alw26I GTCTC 9 cut(s) 39, 85, 195, 359, 437, 481, 1316, 1809, 2279
AlwI GGATC 1 cut(s) 1242
AlwNI CAGNNNCTG 2 cut(s) 152, 199
Ama87I CYCGRG 2 cut(s) 308, 395
Aor13HI TCCGGA 1 cut(s) 2267
AoxI GGCC 5 cut(s) 36, 462, 533, 1019, 1568
ApeKI GCWGC 5 cut(s) 596, 860, 1517, 1982, 2419
ApoI RAATTY 5 cut(s) 313, 661, 1029, 1363, 1450
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp700I GAANNNNTTC 3 cut(s) 677, 832, 2263
AspLEI GCGC 2 cut(s) 75, 553
AspS9I GGNCC 4 cut(s) 16, 534, 1553, 1568
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 6 cut(s) 20, 79, 527, 541, 1270, 2146
AsuNHI GCTAGC 1 cut(s) 863
AvaI CYCGRG 2 cut(s) 308, 395
AvaII GGWCC 2 cut(s) 16, 1553
AxyI CCTNAGG 3 cut(s) 471, 1092, 1928
BaeGI GKGCMC 1 cut(s) 731
BanI GGYRCC 2 cut(s) 550, 1509
BanII GRGCYC 2 cut(s) 396, 2322
BbsI GAAGAC 1 cut(s) 2369
Bbv12I GWGCWC 3 cut(s) 396, 545, 2322
BbvCI CCTCAGC 1 cut(s) 1767
BbvI GCAGC 5 cut(s) 583, 872, 1504, 1969, 2431
BccI CCATC 6 cut(s) 149, 764, 901, 980, 1847, 2043
BcgI CGANNNNNNTGC 4 cut(s) 887, 921, 2201, 2235
BciT130I CCWGG 4 cut(s) 370, 538, 792, 1551
BclI TGATCA 1 cut(s) 703
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 9 cut(s) 39, 85, 195, 359, 437, 481, 1316, 1809, 2279
BfaI CTAG 9 cut(s) 864, 915, 1017, 1464, 1679, 1787, 1878, 2157, 2367
BfoI RGCGCY 1 cut(s) 554
BfuAI ACCTGC 2 cut(s) 741, 1966
BisI GCNGC 6 cut(s) 39, 597, 861, 1518, 1983, 2420
BlpI GCTNAGC 1 cut(s) 909
BlsI GCNGC 6 cut(s) 40, 598, 862, 1519, 1984, 2421
BmcAI AGTACT 1 cut(s) 1121
Bme1390I CCNGG 5 cut(s) 110, 370, 538, 792, 1551
Bme18I GGWCC 2 cut(s) 16, 1553
BmeT110I CYCGRG 2 cut(s) 308, 395
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 4 cut(s) 16, 534, 1553, 1568
BmiI GGNNCC 4 cut(s) 306, 552, 1511, 1569
BmrFI CCNGG 5 cut(s) 110, 370, 538, 792, 1551
BmrI ACTGGG 1 cut(s) 1681
BmsI GCATC 6 cut(s) 631, 801, 1578, 1598, 1804, 2361
BmtI GCTAGC 1 cut(s) 867
BmuI ACTGGG 1 cut(s) 1681
BpiI GAAGAC 1 cut(s) 2369
BplI GAGNNNNNCTC 2 cut(s) 1763, 1795
BpmI CTGGAG 4 cut(s) 263, 302, 954, 2333
Bpu10I CCTNAGC 4 cut(s) 206, 1071, 1402, 1767
Bpu1102I GCTNAGC 1 cut(s) 909
BpuEI CTTGAG 3 cut(s) 461, 1144, 1205
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 2034
BsaHI GRCGYC 1 cut(s) 551
BsaI GGTCTC 3 cut(s) 195, 359, 481
BsaJI CCNNGG 2 cut(s) 536, 546
BsaWI WCCGGW 1 cut(s) 2267
BsaXI ACNNNNNCTCC 6 cut(s) 236, 266, 1202, 1232, 2234, 2264
Bsc4I CCNNNNNNNGG 3 cut(s) 1303, 1929, 2173
Bse118I RCCGGY 1 cut(s) 2208
Bse1I ACTGG 5 cut(s) 880, 1676, 1834, 2001, 2316
Bse21I CCTNAGG 3 cut(s) 471, 1092, 1928
Bse3DI GCAATG 1 cut(s) 1597
Bse8I GATNNNNATC 1 cut(s) 2034
BseAI TCCGGA 1 cut(s) 2267
BseBI CCWGG 4 cut(s) 370, 538, 792, 1551
BseDI CCNNGG 2 cut(s) 536, 546
BseJI GATNNNNATC 1 cut(s) 2034
BseLI CCNNNNNNNGG 3 cut(s) 1303, 1929, 2173
BseMI GCAATG 1 cut(s) 1597
BseNI ACTGG 5 cut(s) 880, 1676, 1834, 2001, 2316
BseRI GAGGAG 5 cut(s) 1172, 1204, 1784, 1905, 2330
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 5 cut(s) 583, 872, 1504, 1969, 2431
BseYI CCCAGC 2 cut(s) 232, 1479
Bsh1236I CGCG 2 cut(s) 73, 1038
BshFI GGCC 5 cut(s) 38, 464, 535, 1021, 1570
BshNI GGYRCC 2 cut(s) 550, 1509
BsiHKAI GWGCWC 3 cut(s) 396, 545, 2322
BsiHKCI CYCGRG 2 cut(s) 308, 395
BsiSI CCGG 6 cut(s) 42, 110, 258, 1022, 2209, 2268
BslFI GGGAC 3 cut(s) 428, 1591, 1689
BslI CCNNNNNNNGG 3 cut(s) 1303, 1929, 2173
BsmAI GTCTC 9 cut(s) 39, 85, 195, 359, 437, 481, 1316, 1809, 2279
BsmBI CGTCTC 3 cut(s) 39, 85, 2279
BsmFI GGGAC 3 cut(s) 428, 1591, 1689
BsnI GGCC 5 cut(s) 38, 464, 535, 1021, 1570
Bso31I GGTCTC 3 cut(s) 195, 359, 481
BsoBI CYCGRG 2 cut(s) 308, 395
Bsp1286I GDGCHC 4 cut(s) 396, 545, 731, 2322
Bsp13I TCCGGA 1 cut(s) 2267
Bsp1407I TGTACA 1 cut(s) 2005
Bsp143I GATC 5 cut(s) 325, 703, 1198, 1234, 2029
Bsp1720I GCTNAGC 1 cut(s) 909
Bsp19I CCATGG 1 cut(s) 546
Bsp68I TCGCGA 1 cut(s) 1038
BspACI CCGC 6 cut(s) 19, 39, 122, 1256, 1297, 1746
BspANI GGCC 5 cut(s) 38, 464, 535, 1021, 1570
BspEI TCCGGA 1 cut(s) 2267
BspFNI CGCG 2 cut(s) 73, 1038
BspLI GGNNCC 4 cut(s) 306, 552, 1511, 1569
BspMI ACCTGC 2 cut(s) 741, 1966
BspOI GCTAGC 1 cut(s) 867
BspPI GGATC 1 cut(s) 1242
BspT107I GGYRCC 2 cut(s) 550, 1509
BspTNI GGTCTC 3 cut(s) 195, 359, 481
BsrDI GCAATG 1 cut(s) 1597
BsrFI RCCGGY 1 cut(s) 2208
BsrGI TGTACA 1 cut(s) 2005
BsrI ACTGG 5 cut(s) 880, 1676, 1834, 2001, 2316
BssAI RCCGGY 1 cut(s) 2208
BssECI CCNNGG 2 cut(s) 536, 546
BssMI GATC 5 cut(s) 325, 703, 1198, 1234, 2029
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 4 cut(s) 370, 538, 792, 1551
Bst4CI ACNGT 7 cut(s) 515, 719, 962, 1460, 1706, 2095, 2120
Bst6I CTCTTC 1 cut(s) 2241
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 2 cut(s) 1398, 1608
BstAUI TGTACA 1 cut(s) 2005
BstDSI CCRYGG 1 cut(s) 546
BstEII GGTNACC 1 cut(s) 2204
BstFNI CGCG 2 cut(s) 73, 1038
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 2 cut(s) 75, 553
BstKTI GATC 5 cut(s) 328, 706, 1201, 1237, 2032
BstMAI GTCTC 9 cut(s) 39, 85, 195, 359, 437, 481, 1316, 1809, 2279
BstMBI GATC 5 cut(s) 325, 703, 1198, 1234, 2029
BstMWI GCNNNNNNNGC 6 cut(s) 500, 910, 1398, 1608, 2183, 2384
BstNI CCWGG 4 cut(s) 370, 538, 792, 1551
BstNSI RCATGY 1 cut(s) 1760
BstPI GGTNACC 1 cut(s) 2204
BstSCI CCNGG 5 cut(s) 108, 368, 536, 790, 1549
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 2 cut(s) 73, 1038
BstV1I GCAGC 5 cut(s) 583, 872, 1504, 1969, 2431
BstV2I GAAGAC 1 cut(s) 2369
BstXI CCANNNNNNTGG 1 cut(s) 1604
Bsu36I CCTNAGG 3 cut(s) 471, 1092, 1928
BsuRI GGCC 5 cut(s) 38, 464, 535, 1021, 1570
BtgI CCRYGG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 79
BtsI GCAGTG 2 cut(s) 489, 591
BtsIMutI CAGTG 4 cut(s) 489, 591, 2008, 2067
BtuMI TCGCGA 1 cut(s) 1038
BveI ACCTGC 2 cut(s) 741, 1966
CaiI CAGNNNCTG 2 cut(s) 152, 199
CfoI GCGC 2 cut(s) 75, 553
Cfr10I RCCGGY 1 cut(s) 2208
Cfr13I GGNCC 4 cut(s) 16, 534, 1553, 1568
CseI GACGC 1 cut(s) 79
Csp6I GTAC 5 cut(s) 840, 1120, 2006, 2096, 2164
CviAII CATG 8 cut(s) 547, 1066, 1428, 1514, 1616, 1757, 2131, 2359
CviQI GTAC 5 cut(s) 840, 1120, 2006, 2096, 2164
DinI GGCGCC 1 cut(s) 552
DpnI GATC 5 cut(s) 327, 705, 1200, 1236, 2031
DpnII GATC 5 cut(s) 325, 703, 1198, 1234, 2029
DraI TTTAAA 2 cut(s) 360, 1741
DraIII CACNNNGTG 1 cut(s) 2345
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 2241
EarI CTCTTC 1 cut(s) 2241
Ecl136II GAGCTC 2 cut(s) 394, 2320
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 2 cut(s) 396, 2322
Eco31I GGTCTC 3 cut(s) 195, 359, 481
Eco47I GGWCC 2 cut(s) 16, 1553
Eco53kI GAGCTC 2 cut(s) 394, 2320
Eco57I CTGAAG 3 cut(s) 1157, 1794, 2172
Eco81I CCTNAGG 3 cut(s) 471, 1092, 1928
Eco88I CYCGRG 2 cut(s) 308, 395
Eco91I GGTNACC 1 cut(s) 2204
EcoICRI GAGCTC 2 cut(s) 394, 2320
EcoO109I RGGNCCY 1 cut(s) 1568
EcoO65I GGTNACC 1 cut(s) 2204
EcoRI GAATTC 2 cut(s) 313, 1029
EcoRII CCWGG 4 cut(s) 368, 536, 790, 1549
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 2 cut(s) 396, 2322
EgeI GGCGCC 1 cut(s) 552
EheI GGCGCC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 3 cut(s) 39, 85, 2279
FaeI CATG 8 cut(s) 550, 1069, 1431, 1517, 1619, 1760, 2134, 2362
FalI AAGNNNNNCTT 6 cut(s) 111, 143, 1385, 1417, 1929, 1961
FaqI GGGAC 3 cut(s) 428, 1591, 1689
FatI CATG 8 cut(s) 546, 1065, 1427, 1513, 1615, 1756, 2130, 2358
FauI CCCGC 2 cut(s) 115, 1739
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 6 cut(s) 39, 597, 861, 1518, 1983, 2420
FriOI GRGCYC 2 cut(s) 396, 2322
Fsp4HI GCNGC 6 cut(s) 39, 597, 861, 1518, 1983, 2420
FspBI CTAG 9 cut(s) 864, 915, 1017, 1464, 1679, 1787, 1878, 2157, 2367
GlaI GCGC 2 cut(s) 74, 552
GluI GCNGC 6 cut(s) 39, 597, 861, 1518, 1983, 2420
GsaI CCCAGC 2 cut(s) 236, 1483
GsuI CTGGAG 4 cut(s) 263, 302, 954, 2333
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 5 cut(s) 38, 464, 535, 1021, 1570
HapII CCGG 6 cut(s) 42, 110, 258, 1022, 2209, 2268
HgaI GACGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 75, 553
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 8 cut(s) 550, 1069, 1431, 1517, 1619, 1760, 2134, 2362
Hin6I GCGC 2 cut(s) 73, 551
HinP1I GCGC 2 cut(s) 73, 551
HincII GTYRAC 2 cut(s) 273, 570
HindII GTYRAC 2 cut(s) 273, 570
HindIII AAGCTT 1 cut(s) 437
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 6 cut(s) 42, 110, 258, 1022, 2209, 2268
HphI GGTGA 6 cut(s) 20, 79, 527, 541, 1270, 2146
Hpy166II GTNNAC 4 cut(s) 273, 570, 2006, 2339
Hpy8I GTNNAC 4 cut(s) 273, 570, 2006, 2339
HpyCH4III ACNGT 7 cut(s) 515, 719, 962, 1460, 1706, 2095, 2120
HpyCH4IV ACGT 4 cut(s) 78, 388, 566, 1350
HpyF10VI GCNNNNNNNGC 6 cut(s) 500, 910, 1398, 1608, 2183, 2384
HpySE526I ACGT 4 cut(s) 78, 388, 566, 1350
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 8 cut(s) 550, 1069, 1431, 1517, 1619, 1760, 2134, 2362
HspAI GCGC 2 cut(s) 73, 551
KasI GGCGCC 1 cut(s) 550
Kpn2I TCCGGA 1 cut(s) 2267
Ksp22I TGATCA 1 cut(s) 703
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 5 cut(s) 325, 703, 1198, 1234, 2029
LmnI GCTCC 5 cut(s) 196, 540, 1084, 1696, 2317
Lsp1109I GCAGC 5 cut(s) 583, 872, 1504, 1969, 2431
LweI GCATC 6 cut(s) 631, 801, 1578, 1598, 1804, 2361
MaeI CTAG 9 cut(s) 864, 915, 1017, 1464, 1679, 1787, 1878, 2157, 2367
MaeII ACGT 4 cut(s) 78, 388, 566, 1350
MaeIII GTNAC 5 cut(s) 8, 67, 1385, 1466, 2204
MalI GATC 5 cut(s) 327, 705, 1200, 1236, 2031
MboI GATC 5 cut(s) 325, 703, 1198, 1234, 2029
MfeI CAATTG 1 cut(s) 1238
MhlI GDGCHC 4 cut(s) 396, 545, 731, 2322
Mly113I GGCGCC 1 cut(s) 551
MlyI GAGTC 2 cut(s) 649, 1046
MmeI TCCRAC 2 cut(s) 1074, 1465
MroI TCCGGA 1 cut(s) 2267
MroXI GAANNNNTTC 3 cut(s) 677, 832, 2263
MseI TTAA 8 cut(s) 129, 359, 569, 1545, 1641, 1710, 1740, 1883
MslI CAYNNNNRTG 1 cut(s) 1432
MspI CCGG 6 cut(s) 42, 110, 258, 1022, 2209, 2268
MspR9I CCNGG 5 cut(s) 110, 370, 538, 792, 1551
MunI CAATTG 1 cut(s) 1238
MvaI CCWGG 4 cut(s) 370, 538, 792, 1551
MvnI CGCG 2 cut(s) 73, 1038
MwoI GCNNNNNNNGC 6 cut(s) 500, 910, 1398, 1608, 2183, 2384
NarI GGCGCC 1 cut(s) 551
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 325, 703, 1198, 1234, 2029
NheI GCTAGC 1 cut(s) 863
NlaIII CATG 8 cut(s) 550, 1069, 1431, 1517, 1619, 1760, 2134, 2362
NlaIV GGNNCC 4 cut(s) 306, 552, 1511, 1569
NmuCI GTSAC 3 cut(s) 8, 67, 1385
NruI TCGCGA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 1760
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PdmI GAANNNNTTC 3 cut(s) 677, 832, 2263
PkrI GCNGC 6 cut(s) 40, 598, 862, 1519, 1984, 2421
PleI GAGTC 2 cut(s) 649, 1046
PluTI GGCGCC 1 cut(s) 554
PpsI GAGTC 2 cut(s) 649, 1046
Psp124BI GAGCTC 2 cut(s) 396, 2322
Psp6I CCWGG 4 cut(s) 368, 536, 790, 1549
PspEI GGTNACC 1 cut(s) 2204
PspFI CCCAGC 2 cut(s) 232, 1479
PspGI CCWGG 4 cut(s) 368, 536, 790, 1549
PspN4I GGNNCC 4 cut(s) 306, 552, 1511, 1569
PspPI GGNCC 4 cut(s) 16, 534, 1553, 1568
PstNI CAGNNNCTG 2 cut(s) 152, 199
RruI TCGCGA 1 cut(s) 1038
RsaI GTAC 5 cut(s) 841, 1121, 2007, 2097, 2165
RsaNI GTAC 5 cut(s) 840, 1120, 2006, 2096, 2164
RseI CAYNNNNRTG 1 cut(s) 1432
SacI GAGCTC 2 cut(s) 396, 2322
SaqAI TTAA 8 cut(s) 129, 359, 569, 1545, 1641, 1710, 1740, 1883
SatI GCNGC 6 cut(s) 39, 597, 861, 1518, 1983, 2420
Sau3AI GATC 5 cut(s) 325, 703, 1198, 1234, 2029
Sau96I GGNCC 4 cut(s) 16, 534, 1553, 1568
ScaI AGTACT 1 cut(s) 1121
SchI GAGTC 2 cut(s) 649, 1046
ScrFI CCNGG 5 cut(s) 110, 370, 538, 792, 1551
SduI GDGCHC 4 cut(s) 396, 545, 731, 2322
SfaNI GCATC 6 cut(s) 631, 801, 1578, 1598, 1804, 2361
SfoI GGCGCC 1 cut(s) 552
SinI GGWCC 2 cut(s) 16, 1553
SmiMI CAYNNNNRTG 1 cut(s) 1432
SmlI CTYRAG 3 cut(s) 440, 1123, 1184
SmoI CTYRAG 3 cut(s) 440, 1123, 1184
SsiI CCGC 6 cut(s) 19, 39, 122, 1256, 1297, 1746
SspDI GGCGCC 1 cut(s) 550
SspMI CTAG 9 cut(s) 864, 915, 1017, 1464, 1679, 1787, 1878, 2157, 2367
SstI GAGCTC 2 cut(s) 396, 2322
StyD4I CCNGG 5 cut(s) 108, 368, 536, 790, 1549
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 7 cut(s) 515, 719, 962, 1460, 1706, 2095, 2120
TaiI ACGT 4 cut(s) 81, 391, 569, 1353
TaqI TCGA 7 cut(s) 658, 665, 681, 806, 826, 941, 1109
TatI WGTACW 2 cut(s) 1119, 2005
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 8 cut(s) 129, 359, 569, 1545, 1641, 1710, 1740, 1883
Tru9I TTAA 8 cut(s) 129, 359, 569, 1545, 1641, 1710, 1740, 1883
TscAI CASTG 4 cut(s) 496, 598, 2008, 2074
TseFI GTSAC 3 cut(s) 8, 67, 1385
TseI GCWGC 5 cut(s) 596, 860, 1517, 1982, 2419
Tsp45I GTSAC 3 cut(s) 8, 67, 1385
TspDTI ATGAA 3 cut(s) 734, 1416, 2375
TspGWI ACGGA 4 cut(s) 1598, 2072, 2203, 2303
TspRI CASTG 4 cut(s) 496, 598, 2008, 2074
VpaK11BI GGWCC 2 cut(s) 16, 1553
XapI RAATTY 5 cut(s) 313, 661, 1029, 1363, 1450
XceI RCATGY 1 cut(s) 1760
XcmI CCANNNNNNNNNTGG 2 cut(s) 544, 1520
XmnI GAANNNNTTC 3 cut(s) 677, 832, 2263
XspI CTAG 9 cut(s) 864, 915, 1017, 1464, 1679, 1787, 1878, 2157, 2367
ZrmI AGTACT 1 cut(s) 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.