MD16G1014700.v1.1

OBERON 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015295
Physical Location & Seq
Reverse (-)
1130716 .. 1134095
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1014700.v1.1.491

Sequence Viewer

Length: 2334 bp
ATGGGATTCTCCGAAAAGGGGTTCGGATTTCTTAGAGAATCAGACATGGGTTCTGATGGGTTCCAATCAAAACCCTCAAAGATTGGAAATTTAGGTTCGCAGGAGTTGACTCTAAGCTACCTCTGCGACAGTTCCAAACTGGGTTTTCTCGAGAAGGAGTTACCCGGCGCAAATTTGCTGACTTCGTTGGAGAAAGAGAGTTTCAAAGGTAAAGGCATCATCGTATCTGAGAATTCTAACAAATGGGTAGAGAGAGATTTCCTTAATTTGAACGAAACCAGGTTGAATTGCTCGAAGCGAGAGCTTGAGGAGGAGGCGGAGAGAGAAAGCAGGGTCGACAAGAAGCCAAAGCTCGAGACTTTGAATCTCTCTCTAGCCTTGCCGGAGGTATCTCTCTCTCTCACCGCCTCAAACGCCTTGCAGAATGGCGATCATCCGGCGATGCTGCGGCCTAGTAGAAGCATACAGTCGTTGGCGCCGTCTGCTAACAACACACAGACCACTTGCTCCAATGATTTCACAGCAGCTTCATTGTCGTACTCTTATTCCCACCAATTTTCCCACAACCCCAGTTGCTCGCTTACCCGAAATTCGACGGATTTCGAGTATTCTGTTGGGAAAGATGATCAAATTTGGAACTGTGGGGAGGGGACTAATGGGTCTGTGCATAGCAGGTTTAAGCCGATTGGAGACGGAGTCGGTTTGTCGAATCACGGCGGCGGGATTTTGTCGATGATGCAGAGTAATCGTAAGGATTCTTGTAATAATAACAGTGTTTATAGGACAACTAGCTCTGAAAATCTTTCTTTTTTTCCATCTGAGTTGCCTGCTAAGCCGAAAATCGATACCCTTTCCGGGGATTCTAGAGGGAGAGGTTCTGAAAGTTTGAGAGGATTGGAGGGTGTGGATGGTGGTGGGAGAGCCAGGAAACTCTCGAGACCGGAGAGAATTCTCCGCGAAATTGTTTCGGAGTCTGTAACTGGCATGGCTCAGATAGTTCAAGAGCTTCCCGAAGAAATGCTCTTATCAACTAAAGAATACTTGAAGAATCTGACATCTGCGCCAGAGAAGAAGGAAGAATTGGCGAGCCTTCAAAACCGGCTTCAGAGAAGGTCTGATCTTACAAAGGAGAATCTCTCTAAATGTCAGAAGGATCAATTGGAGATTTTGGTTGCTGTGAAAATGGGACTTGGGAACTTCGTATCTGGGAAAAACCGCCTTCCAGCAACCGAGCTGGTGGAGATTTTTTCGTTTATGAGGTGTAAGAATGTGAATTGCAAGAGTTTATTGCCCGTTGATGATTGTGACTGCAAGATTTGCTCTGCAAATAAGGGGTTTTGTAGTTCCTGTATGTGTCCTGTATGTTTGAATTTCGACTGTGCCAATAATACTTGTAGTTGGGTTGGCTGCGATGTTTGCTCGCATTGGTGCCACGCTGCTTGTGGTATTCAGAGGAATCTCATTAAACCGGGTCCTAGCTTGAAGGGTCCCTCTGGGACAACTGAGATGCAATTTCATTGCATTGGATGCGGCCATGCTTCGGAAATGTTTGGTTTTGTTAAGGATGTGTTTCTGTGCTGTGCAAAGGACTGGGGACTAGAGACCCTTATCAAGGAGCTTGACTGTGTTAAGAAGATTTTTAGGAGAAGCGATGATTTTAAAGGCCGGGAACTGCATATTAAGGCTGAGGAGATTATTTCCAAGCTTGGAAGCCAGTTGATGTCTCCTTCAGATGCCTGCAATTTCATTATTCAGTTCTTTAATTATACAGATGGAGTATCAGAATATCCTGCTTCTACCATATCCACAAAAGAGTTGAGTGCCTCTCAATCCAGCCTGAGAAAAGATTTGACCCCCTTTTCACAATCCGTTTCTGCACCTCCGAAATATGCTGTTTACAACACAAGTTCTAGTATGCAACGAGATTCACTGTCCAACGATACGCGTCAGAAATCATCCCACATAAGCAATGAGGATGAGTTCCAGTTTGGGACCTTACCAAAAATAGACGGGTTTGAGAGCTTGGAAAGCTTAGTGAGGATAAAGGAAGCGGAAGCTAGAATGTTCCAGGACAAGGCTGATGAAGCGCGGAGAGAGGCAGAAGGGTACCGTCAGATGATACAAACAAAGACGGAGAAGCTGGAGGAAGAGTATGCCGGAAAGTTTTCCAAATTGTGTCTGAAAGAGACGGAGGAAAAGCGAAGGAAGAAACTGGAGGAGCTGAAAATTTTGGAAAGTTCGCATTGTGATTACTACAAGATGAAAACTCGAATGCAAGGCGAGATTGCTGGCTTGTTGGAGAGAATGGAAGCAACAAAGCAGCAACGGGTCTAG

Protein Analysis

778

Amino Acids

86.54

Weight (kDa)

6.52

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_Oberon PF07227 421 - 545 1.8e-36 PHD - plant homeodomain finger protein
Oberon_cc PF16312 646 - 766 2.2e-44 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14740
fragaria_vesca FvH4_4g33110
malus_domestica MD13G1016800.v1.1 MD16G1014700.v1.1
prunus_persica Prupe.1G336600_v2.0.a1
pyrus_communis pycom16g01350
rosa_chinensis RchiOBHm_Chr4g0442161
rosa_laevigata RLG00000006035
rosa_multiflora Rmu_sc0010284.1_g000009
rosa_roxburghii Rroxscaffold_5G00383070
rosa_rugosa Rorug04G0339300
rosa_samantha Rh4AG390900 Rh4BG404500 Rh4CG419500 Rh4DG397400
rosa_wichuraiana Rw4G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 663
Acc65I GGTACC 1 cut(s) 2106
AccB1I GGYRCC 3 cut(s) 475, 1428, 2106
AccI GTMKAC 1 cut(s) 336
AccII CGCG 3 cut(s) 957, 1945, 2089
AclWI GGATC 1 cut(s) 1161
AcoI YGGCCR 1 cut(s) 1531
AcsI RAATTY 8 cut(s) 88, 172, 232, 589, 630, 948, 1369, 2226
AcuI CTGAAG 2 cut(s) 1088, 1713
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 2 cut(s) 539, 2108
AfiI CCNNNNNNNGG 6 cut(s) 18, 855, 856, 1540, 1612, 2074
AflIII ACRYGT 1 cut(s) 1943
AgsI TTSAA 9 cut(s) 205, 271, 286, 364, 1001, 1045, 1094, 1369, 1483
AjnI CCWGG 3 cut(s) 278, 923, 2067
AjuI GAANNNNNNNTTGG 4 cut(s) 1064, 1096, 1142, 1174
Alw26I GTCTC 6 cut(s) 350, 684, 931, 1595, 1728, 2180
AlwI GGATC 1 cut(s) 1161
Ama87I CYCGRG 3 cut(s) 149, 353, 934
AoxI GGCC 3 cut(s) 449, 1531, 1663
ApeKI GCWGC 5 cut(s) 445, 524, 1407, 1436, 2320
ApoI RAATTY 8 cut(s) 88, 172, 232, 589, 630, 948, 1369, 2226
Asp700I GAANNNNTTC 1 cut(s) 2164
Asp718I GGTACC 1 cut(s) 2106
AspLEI GCGC 4 cut(s) 170, 478, 1063, 2089
AspS9I GGNCC 3 cut(s) 1472, 1487, 1992
AsuC2I CCSGG 4 cut(s) 165, 856, 1470, 1667
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 3 cut(s) 149, 353, 934
AvaII GGWCC 3 cut(s) 1472, 1487, 1992
BanI GGYRCC 3 cut(s) 475, 1428, 2106
BbvCI CCTCAGC 1 cut(s) 1686
BbvI GCAGC 4 cut(s) 432, 536, 1394, 1423
BccI CCATC 4 cut(s) 50, 823, 902, 1766
BceAI ACGGC 2 cut(s) 463, 730
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BciT130I CCWGG 3 cut(s) 280, 925, 2069
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 4 cut(s) 165, 856, 1470, 1667
BcoDI GTCTC 6 cut(s) 350, 684, 931, 1595, 1728, 2180
BfaI CTAG 9 cut(s) 374, 453, 789, 864, 1476, 1598, 1911, 2058, 2332
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 663
BisI GCNGC 8 cut(s) 446, 449, 525, 718, 1408, 1437, 1531, 2321
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 8 cut(s) 447, 450, 526, 719, 1409, 1438, 1532, 2322
Bme1390I CCNGG 7 cut(s) 165, 280, 856, 925, 1470, 1667, 2069
Bme18I GGWCC 3 cut(s) 1472, 1487, 1992
BmeT110I CYCGRG 3 cut(s) 149, 353, 934
BmgT120I GGNCC 3 cut(s) 1472, 1487, 1992
BmiI GGNNCC 8 cut(s) 62, 477, 1430, 1473, 1488, 1489, 1993, 2108
BmrFI CCNGG 7 cut(s) 165, 280, 856, 925, 1470, 1667, 2069
BmrI ACTGGG 3 cut(s) 149, 564, 1600
BmsI GCATC 6 cut(s) 225, 432, 726, 1497, 1517, 1723
BmuI ACTGGG 3 cut(s) 149, 564, 1600
BplI GAGNNNNNCTC 4 cut(s) 1121, 1153, 1810, 1842
BpmI CTGGAG 2 cut(s) 2162, 2234
Bpu10I CCTNAGC 1 cut(s) 1686
Bpu1102I GCTNAGC 1 cut(s) 831
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 4 cut(s) 165, 856, 1470, 1667
Bsa29I ATCGAT 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 476
BsaI GGTCTC 2 cut(s) 931, 1595
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 4 cut(s) 681, 711, 2135, 2165
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 855, 856, 1540, 1612, 2074
Bse118I RCCGGY 1 cut(s) 1098
Bse1I ACTGG 7 cut(s) 144, 570, 985, 1595, 1714, 1984, 2217
Bse3DI GCAATG 2 cut(s) 1516, 1975
BseBI CCWGG 3 cut(s) 280, 925, 2069
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 6 cut(s) 433, 913, 1532, 1570, 1955, 1981
BseLI CCNNNNNNNGG 6 cut(s) 18, 855, 856, 1540, 1612, 2074
BseMI GCAATG 2 cut(s) 1516, 1975
BseMII CTCAG 6 cut(s) 219, 810, 1004, 1494, 1677, 1829
BseNI ACTGG 7 cut(s) 144, 570, 985, 1595, 1714, 1984, 2217
BseRI GAGGAG 4 cut(s) 323, 326, 1703, 2231
BseXI GCAGC 4 cut(s) 432, 536, 1394, 1423
BsgI GTGCAG 1 cut(s) 1860
Bsh1236I CGCG 3 cut(s) 957, 1945, 2089
BshFI GGCC 3 cut(s) 451, 1533, 1665
BshNI GGYRCC 3 cut(s) 475, 1428, 2106
BshVI ATCGAT 1 cut(s) 843
BsiHKCI CYCGRG 3 cut(s) 149, 353, 934
BsiSI CCGG 9 cut(s) 165, 383, 437, 855, 941, 1099, 1469, 1666, 2157
BslFI GGGAC 6 cut(s) 664, 1200, 1473, 1510, 1608, 2005
BslI CCNNNNNNNGG 6 cut(s) 18, 855, 856, 1540, 1612, 2074
BsmAI GTCTC 6 cut(s) 350, 684, 931, 1595, 1728, 2180
BsmBI CGTCTC 2 cut(s) 684, 2180
BsmFI GGGAC 6 cut(s) 664, 1200, 1473, 1510, 1608, 2005
BsmI GAATGC 1 cut(s) 2277
BsnI GGCC 3 cut(s) 451, 1533, 1665
Bso31I GGTCTC 2 cut(s) 931, 1595
BsoBI CYCGRG 3 cut(s) 149, 353, 934
Bsp143I GATC 4 cut(s) 430, 625, 1117, 1153
Bsp1720I GCTNAGC 1 cut(s) 831
BspANI GGCC 3 cut(s) 451, 1533, 1665
BspCNI CTCAG 6 cut(s) 220, 811, 1003, 1495, 1678, 1830
BspDI ATCGAT 1 cut(s) 843
BspFNI CGCG 3 cut(s) 957, 1945, 2089
BspLI GGNNCC 8 cut(s) 62, 477, 1430, 1473, 1488, 1489, 1993, 2108
BspMI ACCTGC 1 cut(s) 663
BspPI GGATC 1 cut(s) 1161
BspT107I GGYRCC 3 cut(s) 475, 1428, 2106
BspTNI GGTCTC 2 cut(s) 931, 1595
BsrDI GCAATG 2 cut(s) 1516, 1975
BsrFI RCCGGY 1 cut(s) 1098
BsrI ACTGG 7 cut(s) 144, 570, 985, 1595, 1714, 1984, 2217
BssAI RCCGGY 1 cut(s) 1098
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 4 cut(s) 430, 625, 1117, 1153
BssNI GRCGYC 1 cut(s) 476
Bst2UI CCWGG 3 cut(s) 280, 925, 2069
Bst4CI ACNGT 8 cut(s) 131, 468, 641, 773, 1379, 1625, 1932, 2111
Bst6I CTCTTC 1 cut(s) 2142
BstACI GRCGYC 1 cut(s) 476
BstAPI GCANNNNNTGC 2 cut(s) 1317, 1527
BstC8I GCNNGC 6 cut(s) 578, 828, 1087, 1421, 1738, 2290
BstENI CCTNNNNNAGG 1 cut(s) 1610
BstF5I GGATG 6 cut(s) 433, 913, 1532, 1570, 1955, 1981
BstFNI CGCG 3 cut(s) 957, 1945, 2089
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 4 cut(s) 170, 478, 1063, 2089
BstKTI GATC 4 cut(s) 433, 628, 1120, 1156
BstMAI GTCTC 6 cut(s) 350, 684, 931, 1595, 1728, 2180
BstMBI GATC 4 cut(s) 430, 625, 1117, 1153
BstMWI GCNNNNNNNGC 9 cut(s) 123, 413, 482, 832, 1317, 1416, 1527, 2028, 2084
BstNI CCWGG 3 cut(s) 280, 925, 2069
BstSCI CCNGG 7 cut(s) 163, 278, 854, 923, 1468, 1665, 2067
BstUI CGCG 3 cut(s) 957, 1945, 2089
BstV1I GCAGC 4 cut(s) 432, 536, 1394, 1423
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 3 cut(s) 451, 1533, 1665
BsuTUI ATCGAT 1 cut(s) 843
BtgZI GCGATG 3 cut(s) 455, 1425, 1665
BtsCI GGATG 6 cut(s) 433, 913, 1532, 1570, 1955, 1981
BtsIMutI CAGTG 2 cut(s) 778, 1928
BveI ACCTGC 1 cut(s) 663
Cac8I GCNNGC 6 cut(s) 578, 828, 1087, 1421, 1738, 2290
CfoI GCGC 4 cut(s) 170, 478, 1063, 2089
Cfr10I RCCGGY 1 cut(s) 1098
Cfr13I GGNCC 3 cut(s) 1472, 1487, 1992
ClaI ATCGAT 1 cut(s) 843
CseI GACGC 1 cut(s) 1934
CsiI ACCWGGT 1 cut(s) 278
Csp6I GTAC 2 cut(s) 538, 2107
CspCI CAANNNNNGTGG 2 cut(s) 1421, 1456
CviAII CATG 3 cut(s) 46, 985, 1535
CviQI GTAC 2 cut(s) 538, 2107
DinI GGCGCC 1 cut(s) 477
DpnI GATC 4 cut(s) 432, 627, 1119, 1155
DpnII GATC 4 cut(s) 430, 625, 1117, 1153
DraI TTTAAA 1 cut(s) 1660
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 1531
Eam1104I CTCTTC 1 cut(s) 2142
EarI CTCTTC 1 cut(s) 2142
EciI GGCGGA 1 cut(s) 332
Eco31I GGTCTC 2 cut(s) 931, 1595
Eco47I GGWCC 3 cut(s) 1472, 1487, 1992
Eco57I CTGAAG 2 cut(s) 1088, 1713
Eco88I CYCGRG 3 cut(s) 149, 353, 934
EcoNI CCTNNNNNAGG 1 cut(s) 1610
EcoO109I RGGNCCY 3 cut(s) 1472, 1487, 1992
EcoRI GAATTC 2 cut(s) 232, 948
EcoRII CCWGG 3 cut(s) 278, 923, 2067
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
Esp3I CGTCTC 2 cut(s) 684, 2180
FaeI CATG 3 cut(s) 49, 988, 1538
FaqI GGGAC 6 cut(s) 664, 1200, 1473, 1510, 1608, 2005
FatI CATG 3 cut(s) 45, 984, 1534
FauI CCCGC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 8 cut(s) 446, 449, 525, 718, 1408, 1437, 1531, 2321
FokI GGATG 6 cut(s) 420, 920, 1539, 1577, 1942, 1988
Fsp4HI GCNGC 8 cut(s) 446, 449, 525, 718, 1408, 1437, 1531, 2321
FspBI CTAG 9 cut(s) 374, 453, 789, 864, 1476, 1598, 1911, 2058, 2332
GlaI GCGC 4 cut(s) 169, 477, 1062, 2088
GluI GCNGC 8 cut(s) 446, 449, 525, 718, 1408, 1437, 1531, 2321
GsuI CTGGAG 2 cut(s) 2162, 2234
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 3 cut(s) 451, 1533, 1665
HapII CCGG 9 cut(s) 165, 383, 437, 855, 941, 1099, 1469, 1666, 2157
HgaI GACGC 1 cut(s) 1934
HhaI GCGC 4 cut(s) 170, 478, 1063, 2089
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 3 cut(s) 49, 988, 1538
Hin6I GCGC 4 cut(s) 168, 476, 1061, 2087
HinP1I GCGC 4 cut(s) 168, 476, 1061, 2087
HincII GTYRAC 2 cut(s) 108, 337
HindII GTYRAC 2 cut(s) 108, 337
HindIII AAGCTT 2 cut(s) 1703, 2029
HpaII CCGG 9 cut(s) 165, 383, 437, 855, 941, 1099, 1469, 1666, 2157
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 3 cut(s) 108, 337, 1897
Hpy188III TCNNGA 8 cut(s) 149, 151, 355, 864, 934, 936, 1001, 1010
Hpy8I GTNNAC 3 cut(s) 108, 337, 1897
Hpy99I CGWCG 1 cut(s) 598
HpyCH4III ACNGT 8 cut(s) 131, 468, 641, 773, 1379, 1625, 1932, 2111
HpyF10VI GCNNNNNNNGC 9 cut(s) 123, 413, 482, 832, 1317, 1416, 1527, 2028, 2084
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 3 cut(s) 49, 988, 1538
HspAI GCGC 4 cut(s) 168, 476, 1061, 2087
KasI GGCGCC 1 cut(s) 475
KflI GGGWCCC 1 cut(s) 1487
KpnI GGTACC 1 cut(s) 2110
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 4 cut(s) 430, 625, 1117, 1153
LmnI GCTCC 3 cut(s) 512, 1615, 2218
Lsp1109I GCAGC 4 cut(s) 432, 536, 1394, 1423
LweI GCATC 6 cut(s) 225, 432, 726, 1497, 1517, 1723
MabI ACCWGGT 1 cut(s) 278
MaeI CTAG 9 cut(s) 374, 453, 789, 864, 1476, 1598, 1911, 2058, 2332
MaeIII GTNAC 3 cut(s) 159, 976, 1304
MalI GATC 4 cut(s) 432, 627, 1119, 1155
MboI GATC 4 cut(s) 430, 625, 1117, 1153
MboII GAAGA 7 cut(s) 1025, 1057, 1081, 1088, 1645, 2159, 2218
MfeI CAATTG 1 cut(s) 1157
MluI ACGCGT 1 cut(s) 1943
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 3 cut(s) 103, 705, 980
MmeI TCCRAC 3 cut(s) 168, 1959, 2277
MroXI GAANNNNTTC 1 cut(s) 2164
MseI TTAA 8 cut(s) 264, 678, 1464, 1560, 1629, 1659, 1680, 1761
MspI CCGG 9 cut(s) 165, 383, 437, 855, 941, 1099, 1469, 1666, 2157
MspR9I CCNGG 7 cut(s) 165, 280, 856, 925, 1470, 1667, 2069
MunI CAATTG 1 cut(s) 1157
Mva1269I GAATGC 1 cut(s) 2277
MvaI CCWGG 3 cut(s) 280, 925, 2069
MvnI CGCG 3 cut(s) 957, 1945, 2089
MwoI GCNNNNNNNGC 9 cut(s) 123, 413, 482, 832, 1317, 1416, 1527, 2028, 2084
NarI GGCGCC 1 cut(s) 476
NciI CCSGG 4 cut(s) 165, 856, 1470, 1667
NdeII GATC 4 cut(s) 430, 625, 1117, 1153
NlaIII CATG 3 cut(s) 49, 988, 1538
NlaIV GGNNCC 8 cut(s) 62, 477, 1430, 1473, 1488, 1489, 1993, 2108
NmuCI GTSAC 1 cut(s) 1304
PaeR7I CTCGAG 3 cut(s) 149, 353, 934
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PctI GAATGC 1 cut(s) 2277
PdmI GAANNNNTTC 1 cut(s) 2164
PflFI GACNNNGTC 1 cut(s) 695
PfoI TCCNGGA 1 cut(s) 2067
PkrI GCNGC 8 cut(s) 447, 450, 526, 719, 1409, 1438, 1532, 2322
PleI GAGTC 3 cut(s) 103, 704, 979
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 3 cut(s) 103, 704, 979
PpuMI RGGWCCY 3 cut(s) 1472, 1487, 1992
Psp5II RGGWCCY 3 cut(s) 1472, 1487, 1992
Psp6I CCWGG 3 cut(s) 278, 923, 2067
PspGI CCWGG 3 cut(s) 278, 923, 2067
PspN4I GGNNCC 8 cut(s) 62, 477, 1430, 1473, 1488, 1489, 1993, 2108
PspPI GGNCC 3 cut(s) 1472, 1487, 1992
PspPPI RGGWCCY 3 cut(s) 1472, 1487, 1992
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 2 cut(s) 539, 2108
RsaNI GTAC 2 cut(s) 538, 2107
SalI GTCGAC 1 cut(s) 335
SaqAI TTAA 8 cut(s) 264, 678, 1464, 1560, 1629, 1659, 1680, 1761
SatI GCNGC 8 cut(s) 446, 449, 525, 718, 1408, 1437, 1531, 2321
Sau3AI GATC 4 cut(s) 430, 625, 1117, 1153
Sau96I GGNCC 3 cut(s) 1472, 1487, 1992
SchI GAGTC 3 cut(s) 103, 705, 980
ScrFI CCNGG 7 cut(s) 165, 280, 856, 925, 1470, 1667, 2069
SexAI ACCWGGT 1 cut(s) 278
SfaNI GCATC 6 cut(s) 225, 432, 726, 1497, 1517, 1723
SfoI GGCGCC 1 cut(s) 477
Sfr274I CTCGAG 3 cut(s) 149, 353, 934
SinI GGWCC 3 cut(s) 1472, 1487, 1992
SlaI CTCGAG 3 cut(s) 149, 353, 934
SmlI CTYRAG 4 cut(s) 149, 305, 353, 934
SmoI CTYRAG 4 cut(s) 149, 305, 353, 934
SspDI GGCGCC 1 cut(s) 475
SspMI CTAG 9 cut(s) 374, 453, 789, 864, 1476, 1598, 1911, 2058, 2332
StyD4I CCNGG 7 cut(s) 163, 278, 854, 923, 1468, 1665, 2067
TaaI ACNGT 8 cut(s) 131, 468, 641, 773, 1379, 1625, 1932, 2111
TauI GCSGC 3 cut(s) 451, 720, 1533
Tru1I TTAA 8 cut(s) 264, 678, 1464, 1560, 1629, 1659, 1680, 1761
Tru9I TTAA 8 cut(s) 264, 678, 1464, 1560, 1629, 1659, 1680, 1761
TscAI CASTG 2 cut(s) 778, 1935
TseFI GTSAC 1 cut(s) 1304
TseI GCWGC 5 cut(s) 445, 524, 1407, 1436, 2320
Tsp45I GTSAC 1 cut(s) 1304
TspDTI ATGAA 5 cut(s) 519, 1505, 1735, 2097, 2276
TspGWI ACGGA 5 cut(s) 611, 708, 1858, 2147, 2204
TspRI CASTG 2 cut(s) 778, 1935
Tth111I GACNNNGTC 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 1472, 1487, 1992
XagI CCTNNNNNAGG 1 cut(s) 1610
XapI RAATTY 8 cut(s) 88, 172, 232, 589, 630, 948, 1369, 2226
XbaI TCTAGA 1 cut(s) 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 1439
XhoI CTCGAG 3 cut(s) 149, 353, 934
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 2164
XspI CTAG 9 cut(s) 374, 453, 789, 864, 1476, 1598, 1911, 2058, 2332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.