Rw4G033780

OBERON 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015295
Physical Location & Seq
Reverse (-)
60912842 .. 60916865
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033780.1

Sequence Viewer

Length: 2427 bp
ATGTTTGGTGACAAGGAACGCAGTAGTGCTCTGCTGGCCGCCGGAGACGAGGCTTCTCAGAGCAAGGTGACGCGCCACGTCTCCAAGCAAAGCAAGGACTACAACAACCCGGAAAAGAAACCGGGTCTTAACTTTCTGAGGGATTCAGGCTCTGATGGGTTTCAATCAAAGCCTTGCTCTAATTTTGGGTCTCAGGAGCTGACCCTGAGCTATCTCTGCGATAATTCCAAGCTGGGTTTTCTGGAGAAAGAGTTTTCCGGCAAGAATCTGTTGACTTCTTTGGAGAAAGGTAAGGAAATCTTGGCTCCCGAGAATTCAAGCCAGGATCACAAGTGGGTTGAGAGGGATTTCCTCAATTTAAACGAGAGCAGGCTCAATTCCTCAAAACGTGAGCTTGGTGAAGATGTTGAGAGAGACAGTAGGGAGAAGAAGCCAAAGCTTGAGACTTTGAATCTCTCTCTGGCCTTGCCTCAGGTCTCGCTCTCTCTCACTGCCTCAAACGCTTTGCAAAACGGTGAGCCTTCTATGGCGAGGCCCAGGAGTACCATGGCGCCTTCCACCAACACCTTAACCACTTATTCCAATGATTACACAGCTGCTTCTTTATCCTACTCTTATTCGCATCCCTATTCACACAATCCAAGTTGCTCGCTGACTCGAAATTCGACAGAGAATAATTTCGAGTATTCTGTTGGCAAGGATGATCATATTTGGAACTGTGGGGAGGGCACTAATGGTTCTGTCCACAGCAGGTTCAAGCCGATTGGGGATGGAGTTGGTTTGGCAAATCCTGGTGGGATTCTGTCGATGATGCAGAGTAATAATCGAAAGGATTCAGGTACTAATAGTCTTTATAGGGCAACTAGCTCTGATAATAACCAGTCTTTTTTTCCATCTGAGTTACCTGCTAAGCCTAGAATTGATACTCATTCTGGAGATTCGAGAGGGAGAGGTTCGGACAGTTTGAGAGGTTTGGAGGGTGGAGATGGTGGTGGGAGAGTTAGGAAGCTTTCTAGGCCCGAGAGAATTCTTCGCGAAATTGTTTCCGAGTCTATACCTGTCATGGCTCAGGTGGAGCTTCCTGAGGAAACACTTTTATCGACTAATGAGTACTTGAGGAATCTGATTTCAATGCCTGAGAAGAAAGAGGAGTTGGTGAGCCTTCAGAAAAGGCTTGAGAGGAGGTCTGATCTTACAAAGGAGAATCTGTCCAAGTGTCAGAAGGATCAATTGGAGATTCTGGTTGCGGTGAAAATGGGGCTTGCGAGCTTTGTATCTGGGAAAAACCGCCTTTCGGCAACTGAGTTGGTGGAGACTTTCTTGTTTATGAGATGTAGGAACGTGAATTGCAAGAATTTGTTGCCTGTTGATGATTGCGACTGCAAGATTTGCTCAGGAAATAAGGGGTTTTGTAGTTCATGTATGTGTCCTGTTTGTTTGAATTTTGACTGTGCTAGTAACACTTGTAGTTGGGTTGGATGTGATGTTTGTTCGCATTGGTGCCATGCTGCTTGTGGTATTCAGAAGAATCTCATTAAGCCAGGTCCGAGCTTGAAGGGGCCTTCTGGGACAACGGAGATGCAATTCCATTGCATTGGATGCAGTCATGCTTCGGAAATGTTTGGGTTTGTTAAGGATGTGTTTCTGTGCTGTGCAAAGGACTGGGGACTAGAAACCCTTGTGAAGGAGCTTGACTGTGTTAAGCAGATTTTTAGGAGAAGTGAAGATTTTAAAGGCCGGGAACTGCATATCAAGGCTGAGCAGATTATCTCCAAGCTAGGAAGCCAAGTGATGTCTCCTTCAGATGCCTGCAATTTTATTATCCAGTTTTTCAACTATACAGATGGAGTGTCAGAATATCCAGCTTCTAGTATAACCACATCCTCAACAAAGGAGTTGGCAACTCCTCAAACCAGCCTTAGGAAAGAAGCAACCCTTTTTTCACAACCTGCTTCTCTACCTCCAAAATATGCTGCTTACAACACAAGTTCCAGTGTACAATCTGATTTATTGTCAAATGATCTCCATCAGATTGACCTAAAATCTTCCCTCATAAGCACTGAGGATGAGTTCCGTTTTGGAACAGTACCGAAAATAGAAGGGTTTGACAGTTTGGAGAGCATGGTGAGGATAAAGCAAGCTGAAGCTAGAATGTACCAGAGCAAGGCAGACGAAGCACGGAGAGAGGCAGAAGGTTACCGGCAGATGATTCGGGAAAATACAGAGAAGGTGGAGGAAGAGTATGCTGGAAAGTTTTCCGAATTGTGTCTGCAAGAGACGGAGGAAAAGCGAAGGAAGAAACTGGAGGAGCTCAAAGTTTTGGAAGGTTCACATTGTGATTATTACAACATGAAGACTAGGATGCAAGCCGAAATTGCTGGCTTGTTGGCAAAAATGGAAGCGACAAAGCAGCAACAACGGGTGTAG

Protein Analysis

808

Amino Acids

90.01

Weight (kDa)

6.35

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_Oberon PF07227 445 - 568 3.5e-36 PHD - plant homeodomain finger protein
Oberon_cc PF16312 671 - 796 3.5e-42 Coiled-coil region of Oberon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015295)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14740
fragaria_vesca FvH4_4g33110
malus_domestica MD13G1016800.v1.1 MD16G1014700.v1.1
prunus_persica Prupe.1G336600_v2.0.a1
pyrus_communis pycom16g01350
rosa_chinensis RchiOBHm_Chr4g0442161
rosa_laevigata RLG00000006035
rosa_multiflora Rmu_sc0010284.1_g000009
rosa_roxburghii Rroxscaffold_5G00383070
rosa_rugosa Rorug04G0339300
rosa_samantha Rh4AG390900 Rh4BG404500 Rh4CG419500 Rh4DG397400
rosa_wichuraiana Rw4G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 741, 913, 1957
AccB1I GGYRCC 2 cut(s) 550, 1500
AccII CGCG 2 cut(s) 73, 1035
AciI CCGC 3 cut(s) 39, 1247, 1288
AclWI GGATC 2 cut(s) 333, 1233
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 5 cut(s) 313, 661, 1026, 1354, 1441
AcuI CTGAAG 3 cut(s) 1148, 1785, 2163
AcyI GRCGYC 1 cut(s) 551
AdeI CACNNNGTG 1 cut(s) 2336
AfaI GTAC 6 cut(s) 544, 841, 1112, 1998, 2088, 2156
AfiI CCNNNNNNNGG 4 cut(s) 1294, 1684, 1920, 2164
AgsI TTSAA 8 cut(s) 164, 318, 451, 757, 1131, 1441, 1555, 1834
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 4 cut(s) 321, 536, 790, 1540
AjuI GAANNNNNNNTTGG 4 cut(s) 1136, 1168, 1214, 1246
Alw21I GWGCWC 2 cut(s) 31, 2313
Alw26I GTCTC 9 cut(s) 39, 85, 195, 408, 437, 481, 1307, 1800, 2270
AlwI GGATC 2 cut(s) 333, 1233
AlwNI CAGNNNCTG 2 cut(s) 152, 199
Ama87I CYCGRG 2 cut(s) 308, 1019
AoxI GGCC 6 cut(s) 36, 462, 533, 1016, 1559, 1735
ApeKI GCWGC 4 cut(s) 596, 1508, 1973, 2410
ApoI RAATTY 5 cut(s) 313, 661, 1026, 1354, 1441
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
Asp700I GAANNNNTTC 3 cut(s) 677, 832, 2254
AspLEI GCGC 2 cut(s) 75, 553
AspS9I GGNCC 4 cut(s) 534, 1017, 1544, 1559
AsuC2I CCSGG 3 cut(s) 110, 123, 1739
AsuHPI GGTGA 7 cut(s) 20, 79, 410, 527, 1168, 1261, 2137
AvaI CYCGRG 2 cut(s) 308, 1019
AvaII GGWCC 1 cut(s) 1544
AxyI CCTNAGG 3 cut(s) 471, 1083, 1919
BaeGI GKGCMC 1 cut(s) 731
BanI GGYRCC 2 cut(s) 550, 1500
BanII GRGCYC 1 cut(s) 2313
BbsI GAAGAC 1 cut(s) 2360
Bbv12I GWGCWC 2 cut(s) 31, 2313
BbvI GCAGC 4 cut(s) 583, 1495, 1960, 2422
BccI CCATC 6 cut(s) 149, 764, 901, 980, 1838, 2034
BcgI CGANNNNNNTGC 2 cut(s) 2192, 2226
BciT130I CCWGG 4 cut(s) 323, 538, 792, 1542
BclI TGATCA 1 cut(s) 703
BcnI CCSGG 3 cut(s) 110, 123, 1739
BcoDI GTCTC 9 cut(s) 39, 85, 195, 408, 437, 481, 1307, 1800, 2270
BfaI CTAG 9 cut(s) 864, 915, 1014, 1455, 1670, 1778, 1869, 2148, 2358
BfoI RGCGCY 1 cut(s) 554
BfuAI ACCTGC 3 cut(s) 741, 913, 1957
BisI GCNGC 5 cut(s) 39, 597, 1509, 1974, 2411
BlpI GCTNAGC 2 cut(s) 909, 1758
BlsI GCNGC 5 cut(s) 40, 598, 1510, 1975, 2412
BmcAI AGTACT 1 cut(s) 1112
Bme1390I CCNGG 7 cut(s) 110, 123, 323, 538, 792, 1542, 1739
Bme18I GGWCC 1 cut(s) 1544
BmeT110I CYCGRG 2 cut(s) 308, 1019
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 4 cut(s) 534, 1017, 1544, 1559
BmiI GGNNCC 4 cut(s) 306, 552, 1502, 1560
BmrFI CCNGG 7 cut(s) 110, 123, 323, 538, 792, 1542, 1739
BmrI ACTGGG 1 cut(s) 1672
BmsI GCATC 6 cut(s) 631, 801, 1569, 1589, 1795, 2352
BmuI ACTGGG 1 cut(s) 1672
BpiI GAAGAC 1 cut(s) 2360
BpmI CTGGAG 3 cut(s) 263, 954, 2324
Bpu10I CCTNAGC 3 cut(s) 206, 1068, 1393
Bpu1102I GCTNAGC 2 cut(s) 909, 1758
BpuEI CTTGAG 3 cut(s) 461, 1135, 1196
BpuMI CCSGG 3 cut(s) 110, 123, 1739
BsaBI GATNNNNATC 1 cut(s) 2025
BsaHI GRCGYC 1 cut(s) 551
BsaI GGTCTC 2 cut(s) 195, 481
BsaJI CCNNGG 2 cut(s) 536, 546
BsaXI ACNNNNNCTCC 6 cut(s) 236, 266, 1193, 1223, 2225, 2255
Bsc4I CCNNNNNNNGG 4 cut(s) 1294, 1684, 1920, 2164
Bse118I RCCGGY 1 cut(s) 2199
Bse1I ACTGG 5 cut(s) 880, 1667, 1825, 1992, 2307
Bse21I CCTNAGG 3 cut(s) 471, 1083, 1919
Bse3DI GCAATG 1 cut(s) 1588
Bse8I GATNNNNATC 1 cut(s) 2025
BseBI CCWGG 4 cut(s) 323, 538, 792, 1542
BseDI CCNNGG 2 cut(s) 536, 546
BseGI GGATG 9 cut(s) 622, 706, 775, 1484, 1604, 1642, 1880, 2071, 2367
BseJI GATNNNNATC 1 cut(s) 2025
BseLI CCNNNNNNNGG 4 cut(s) 1294, 1684, 1920, 2164
BseMI GCAATG 1 cut(s) 1588
BseNI ACTGG 5 cut(s) 880, 1667, 1825, 1992, 2307
BseRI GAGGAG 4 cut(s) 1163, 1195, 1896, 2321
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 4 cut(s) 583, 1495, 1960, 2422
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 2 cut(s) 73, 1035
BshFI GGCC 6 cut(s) 38, 464, 535, 1018, 1561, 1737
BshNI GGYRCC 2 cut(s) 550, 1500
BsiHKAI GWGCWC 2 cut(s) 31, 2313
BsiHKCI CYCGRG 2 cut(s) 308, 1019
BsiSI CCGG 6 cut(s) 42, 110, 122, 258, 1738, 2200
BslFI GGGAC 2 cut(s) 1582, 1680
BslI CCNNNNNNNGG 4 cut(s) 1294, 1684, 1920, 2164
BsmAI GTCTC 9 cut(s) 39, 85, 195, 408, 437, 481, 1307, 1800, 2270
BsmBI CGTCTC 3 cut(s) 39, 85, 2270
BsmFI GGGAC 2 cut(s) 1582, 1680
BsnI GGCC 6 cut(s) 38, 464, 535, 1018, 1561, 1737
Bso31I GGTCTC 2 cut(s) 195, 481
BsoBI CYCGRG 2 cut(s) 308, 1019
Bsp1286I GDGCHC 3 cut(s) 31, 731, 2313
Bsp1407I TGTACA 1 cut(s) 1996
Bsp143I GATC 5 cut(s) 325, 703, 1189, 1225, 2020
Bsp1720I GCTNAGC 2 cut(s) 909, 1758
Bsp19I CCATGG 1 cut(s) 546
Bsp68I TCGCGA 1 cut(s) 1035
BspACI CCGC 3 cut(s) 39, 1247, 1288
BspANI GGCC 6 cut(s) 38, 464, 535, 1018, 1561, 1737
BspFNI CGCG 2 cut(s) 73, 1035
BspLI GGNNCC 4 cut(s) 306, 552, 1502, 1560
BspMI ACCTGC 3 cut(s) 741, 913, 1957
BspPI GGATC 2 cut(s) 333, 1233
BspT107I GGYRCC 2 cut(s) 550, 1500
BspTNI GGTCTC 2 cut(s) 195, 481
BsrDI GCAATG 1 cut(s) 1588
BsrFI RCCGGY 1 cut(s) 2199
BsrGI TGTACA 1 cut(s) 1996
BsrI ACTGG 5 cut(s) 880, 1667, 1825, 1992, 2307
BssAI RCCGGY 1 cut(s) 2199
BssECI CCNNGG 2 cut(s) 536, 546
BssMI GATC 5 cut(s) 325, 703, 1189, 1225, 2020
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 4 cut(s) 323, 538, 792, 1542
Bst4CI ACNGT 8 cut(s) 419, 515, 719, 962, 1451, 1697, 2086, 2111
Bst6I CTCTTC 1 cut(s) 2232
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 2 cut(s) 1389, 1599
BstAUI TGTACA 1 cut(s) 1996
BstC8I GCNNGC 9 cut(s) 36, 371, 650, 1263, 1267, 1810, 2139, 2367, 2380
BstDSI CCRYGG 1 cut(s) 546
BstEII GGTNACC 1 cut(s) 2195
BstENI CCTNNNNNAGG 1 cut(s) 1682
BstF5I GGATG 9 cut(s) 622, 706, 775, 1484, 1604, 1642, 1880, 2071, 2367
BstFNI CGCG 2 cut(s) 73, 1035
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 2 cut(s) 75, 553
BstKTI GATC 5 cut(s) 328, 706, 1192, 1228, 2023
BstMAI GTCTC 9 cut(s) 39, 85, 195, 408, 437, 481, 1307, 1800, 2270
BstMBI GATC 5 cut(s) 325, 703, 1189, 1225, 2020
BstMWI GCNNNNNNNGC 8 cut(s) 35, 216, 500, 1015, 1389, 1599, 2174, 2375
BstNI CCWGG 4 cut(s) 323, 538, 792, 1542
BstPI GGTNACC 1 cut(s) 2195
BstSCI CCNGG 7 cut(s) 108, 121, 321, 536, 790, 1540, 1737
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 2 cut(s) 73, 1035
BstV1I GCAGC 4 cut(s) 583, 1495, 1960, 2422
BstV2I GAAGAC 1 cut(s) 2360
BstXI CCANNNNNNTGG 1 cut(s) 1595
Bsu36I CCTNAGG 3 cut(s) 471, 1083, 1919
BsuRI GGCC 6 cut(s) 38, 464, 535, 1018, 1561, 1737
BtgI CCRYGG 1 cut(s) 546
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 9 cut(s) 622, 706, 775, 1484, 1604, 1642, 1880, 2071, 2367
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 3 cut(s) 489, 1999, 2058
BtuMI TCGCGA 1 cut(s) 1035
BveI ACCTGC 3 cut(s) 741, 913, 1957
Cac8I GCNNGC 9 cut(s) 36, 371, 650, 1263, 1267, 1810, 2139, 2367, 2380
CaiI CAGNNNCTG 2 cut(s) 152, 199
CfoI GCGC 2 cut(s) 75, 553
Cfr10I RCCGGY 1 cut(s) 2199
Cfr13I GGNCC 4 cut(s) 534, 1017, 1544, 1559
CseI GACGC 1 cut(s) 79
Csp6I GTAC 6 cut(s) 543, 840, 1111, 1997, 2087, 2155
CviAII CATG 7 cut(s) 547, 1063, 1419, 1505, 1607, 2122, 2350
CviQI GTAC 6 cut(s) 543, 840, 1111, 1997, 2087, 2155
DinI GGCGCC 1 cut(s) 552
DpnI GATC 5 cut(s) 327, 705, 1191, 1227, 2022
DpnII GATC 5 cut(s) 325, 703, 1189, 1225, 2020
DraI TTTAAA 2 cut(s) 360, 1732
DraIII CACNNNGTG 1 cut(s) 2336
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 2232
EarI CTCTTC 1 cut(s) 2232
Ecl136II GAGCTC 1 cut(s) 2311
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 2313
Eco31I GGTCTC 2 cut(s) 195, 481
Eco47I GGWCC 1 cut(s) 1544
Eco53kI GAGCTC 1 cut(s) 2311
Eco57I CTGAAG 3 cut(s) 1148, 1785, 2163
Eco81I CCTNAGG 3 cut(s) 471, 1083, 1919
Eco88I CYCGRG 2 cut(s) 308, 1019
Eco91I GGTNACC 1 cut(s) 2195
EcoICRI GAGCTC 1 cut(s) 2311
EcoNI CCTNNNNNAGG 1 cut(s) 1682
EcoO109I RGGNCCY 1 cut(s) 1559
EcoO65I GGTNACC 1 cut(s) 2195
EcoRI GAATTC 2 cut(s) 313, 1026
EcoRII CCWGG 4 cut(s) 321, 536, 790, 1540
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 2313
EgeI GGCGCC 1 cut(s) 552
EheI GGCGCC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 3 cut(s) 39, 85, 2270
FaeI CATG 7 cut(s) 550, 1066, 1422, 1508, 1610, 2125, 2353
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 1920, 1952
FaqI GGGAC 2 cut(s) 1582, 1680
FatI CATG 7 cut(s) 546, 1062, 1418, 1504, 1606, 2121, 2349
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 5 cut(s) 39, 597, 1509, 1974, 2411
FokI GGATG 9 cut(s) 609, 713, 782, 1491, 1611, 1649, 1867, 2078, 2374
FriOI GRGCYC 1 cut(s) 2313
Fsp4HI GCNGC 5 cut(s) 39, 597, 1509, 1974, 2411
FspBI CTAG 9 cut(s) 864, 915, 1014, 1455, 1670, 1778, 1869, 2148, 2358
GlaI GCGC 2 cut(s) 74, 552
GluI GCNGC 5 cut(s) 39, 597, 1509, 1974, 2411
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 3 cut(s) 263, 954, 2324
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 6 cut(s) 38, 464, 535, 1018, 1561, 1737
HapII CCGG 6 cut(s) 42, 110, 122, 258, 1738, 2200
HgaI GACGC 1 cut(s) 79
HhaI GCGC 2 cut(s) 75, 553
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 7 cut(s) 550, 1066, 1422, 1508, 1610, 2125, 2353
Hin6I GCGC 2 cut(s) 73, 551
HinP1I GCGC 2 cut(s) 73, 551
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 2 cut(s) 437, 1007
HpaII CCGG 6 cut(s) 42, 110, 122, 258, 1738, 2200
HphI GGTGA 7 cut(s) 20, 79, 410, 527, 1168, 1261, 2137
Hpy166II GTNNAC 4 cut(s) 273, 745, 1997, 2330
Hpy188III TCNNGA 9 cut(s) 194, 242, 308, 933, 942, 1034, 1082, 1395, 2213
Hpy8I GTNNAC 4 cut(s) 273, 745, 1997, 2330
HpyCH4III ACNGT 8 cut(s) 419, 515, 719, 962, 1451, 1697, 2086, 2111
HpyCH4IV ACGT 3 cut(s) 78, 388, 1341
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 216, 500, 1015, 1389, 1599, 2174, 2375
HpySE526I ACGT 3 cut(s) 78, 388, 1341
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 7 cut(s) 550, 1066, 1422, 1508, 1610, 2125, 2353
HspAI GCGC 2 cut(s) 73, 551
KasI GGCGCC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 325, 703, 1189, 1225, 2020
LmnI GCTCC 5 cut(s) 196, 310, 1075, 1687, 2308
Lsp1109I GCAGC 4 cut(s) 583, 1495, 1960, 2422
LweI GCATC 6 cut(s) 631, 801, 1569, 1589, 1795, 2352
MaeI CTAG 9 cut(s) 864, 915, 1014, 1455, 1670, 1778, 1869, 2148, 2358
MaeII ACGT 3 cut(s) 78, 388, 1341
MaeIII GTNAC 5 cut(s) 8, 67, 900, 1457, 2195
MalI GATC 5 cut(s) 327, 705, 1191, 1227, 2022
MboI GATC 5 cut(s) 325, 703, 1189, 1225, 2020
MfeI CAATTG 1 cut(s) 1229
MhlI GDGCHC 3 cut(s) 31, 731, 2313
Mly113I GGCGCC 1 cut(s) 551
MlyI GAGTC 2 cut(s) 649, 1058
MmeI TCCRAC 1 cut(s) 1456
MroXI GAANNNNTTC 3 cut(s) 677, 832, 2254
MseI TTAA 7 cut(s) 129, 359, 569, 1536, 1632, 1701, 1731
MslI CAYNNNNRTG 1 cut(s) 1423
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 6 cut(s) 42, 110, 122, 258, 1738, 2200
MspR9I CCNGG 7 cut(s) 110, 123, 323, 538, 792, 1542, 1739
MunI CAATTG 1 cut(s) 1229
MvaI CCWGG 4 cut(s) 323, 538, 792, 1542
MvnI CGCG 2 cut(s) 73, 1035
MwoI GCNNNNNNNGC 8 cut(s) 35, 216, 500, 1015, 1389, 1599, 2174, 2375
NarI GGCGCC 1 cut(s) 551
NciI CCSGG 3 cut(s) 110, 123, 1739
NcoI CCATGG 1 cut(s) 546
NdeII GATC 5 cut(s) 325, 703, 1189, 1225, 2020
NlaIII CATG 7 cut(s) 550, 1066, 1422, 1508, 1610, 2125, 2353
NlaIV GGNNCC 4 cut(s) 306, 552, 1502, 1560
NmuCI GTSAC 2 cut(s) 8, 67
NruI TCGCGA 1 cut(s) 1035
PdmI GAANNNNTTC 3 cut(s) 677, 832, 2254
PkrI GCNGC 5 cut(s) 40, 598, 1510, 1975, 2412
PleI GAGTC 2 cut(s) 649, 1057
PluTI GGCGCC 1 cut(s) 554
PpsI GAGTC 2 cut(s) 649, 1057
Psp124BI GAGCTC 1 cut(s) 2313
Psp6I CCWGG 4 cut(s) 321, 536, 790, 1540
PspEI GGTNACC 1 cut(s) 2195
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 4 cut(s) 321, 536, 790, 1540
PspN4I GGNNCC 4 cut(s) 306, 552, 1502, 1560
PspPI GGNCC 4 cut(s) 534, 1017, 1544, 1559
PstNI CAGNNNCTG 2 cut(s) 152, 199
PvuII CAGCTG 1 cut(s) 596
RruI TCGCGA 1 cut(s) 1035
RsaI GTAC 6 cut(s) 544, 841, 1112, 1998, 2088, 2156
RsaNI GTAC 6 cut(s) 543, 840, 1111, 1997, 2087, 2155
RseI CAYNNNNRTG 1 cut(s) 1423
SacI GAGCTC 1 cut(s) 2313
SaqAI TTAA 7 cut(s) 129, 359, 569, 1536, 1632, 1701, 1731
SatI GCNGC 5 cut(s) 39, 597, 1509, 1974, 2411
Sau3AI GATC 5 cut(s) 325, 703, 1189, 1225, 2020
Sau96I GGNCC 4 cut(s) 534, 1017, 1544, 1559
ScaI AGTACT 1 cut(s) 1112
SchI GAGTC 2 cut(s) 649, 1058
ScrFI CCNGG 7 cut(s) 110, 123, 323, 538, 792, 1542, 1739
SduI GDGCHC 3 cut(s) 31, 731, 2313
SfaNI GCATC 6 cut(s) 631, 801, 1569, 1589, 1795, 2352
SfoI GGCGCC 1 cut(s) 552
SinI GGWCC 1 cut(s) 1544
SmiMI CAYNNNNRTG 1 cut(s) 1423
SmlI CTYRAG 3 cut(s) 440, 1114, 1175
SmoI CTYRAG 3 cut(s) 440, 1114, 1175
SsiI CCGC 3 cut(s) 39, 1247, 1288
SspDI GGCGCC 1 cut(s) 550
SspMI CTAG 9 cut(s) 864, 915, 1014, 1455, 1670, 1778, 1869, 2148, 2358
SstI GAGCTC 1 cut(s) 2313
StyD4I CCNGG 7 cut(s) 108, 121, 321, 536, 790, 1540, 1737
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 8 cut(s) 419, 515, 719, 962, 1451, 1697, 2086, 2111
TaiI ACGT 3 cut(s) 81, 391, 1344
TaqI TCGA 7 cut(s) 658, 665, 681, 806, 826, 941, 1100
TatI WGTACW 2 cut(s) 1110, 1996
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 7 cut(s) 129, 359, 569, 1536, 1632, 1701, 1731
Tru9I TTAA 7 cut(s) 129, 359, 569, 1536, 1632, 1701, 1731
TscAI CASTG 3 cut(s) 496, 1999, 2065
TseFI GTSAC 2 cut(s) 8, 67
TseI GCWGC 4 cut(s) 596, 1508, 1973, 2410
Tsp45I GTSAC 2 cut(s) 8, 67
TspDTI ATGAA 2 cut(s) 1407, 2366
TspGWI ACGGA 4 cut(s) 1589, 2063, 2194, 2294
TspRI CASTG 3 cut(s) 496, 1999, 2065
VpaK11BI GGWCC 1 cut(s) 1544
XagI CCTNNNNNAGG 1 cut(s) 1682
XapI RAATTY 5 cut(s) 313, 661, 1026, 1354, 1441
XcmI CCANNNNNNNNNTGG 2 cut(s) 544, 1511
XmnI GAANNNNTTC 3 cut(s) 677, 832, 2254
XspI CTAG 9 cut(s) 864, 915, 1014, 1455, 1670, 1778, 1869, 2148, 2358
ZrmI AGTACT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.