MD13G1027400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015609
Physical Location & Seq
Forward (+)
1973258 .. 1973500
243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1027400.v1.1.491

Sequence Viewer

Length: 243 bp
ATGATCACCAAACCGCCGTCGAACTGGATGCAGTGGGAGAAGCAATATTATGCACACTACAACTCGGACATCTGCGAAGGCGTGGGGTTGCTGCAATCCCAATTGATGAACACTAGGCCTAGCGTGGCGTTGGGAATGCTTGCTCTTGTTACACTCAGCGTGCCCGTATCCGCGGCTGCTTTGATGTTCCCGTTGCTGGACATTTTCAAGGGGATCTTAGCCAATGGGAATATTCACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.87

Weight (kDa)

6.7

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 3 cut(s) 14, 171, 173
AclWI GGATC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 208
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 2 cut(s) 91, 176
BaeGI GKGCMC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 78, 163
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 114, 120
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 3 cut(s) 92, 174, 177
BlsI GCNGC 3 cut(s) 93, 175, 178
BmsI GCATC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 2 cut(s) 78, 163
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 141
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 3, 213
BspACI CCGC 3 cut(s) 14, 171, 173
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 1 cut(s) 173
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 3, 213
BstC8I GCNNGC 2 cut(s) 141, 161
BstDEI CTNAG 2 cut(s) 155, 217
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 6, 216
BstMBI GATC 2 cut(s) 3, 213
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 78, 163
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 141, 161
Cfr42I CCGCGG 1 cut(s) 174
CviJI RGCY 3 cut(s) 118, 176, 221
CviKI_1 RGCY 3 cut(s) 118, 176, 221
DdeI CTNAG 2 cut(s) 155, 217
DpnI GATC 2 cut(s) 5, 215
DpnII GATC 2 cut(s) 3, 213
Eco147I AGGCCT 1 cut(s) 118
FaiI YATR 1 cut(s) 51
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 92, 174, 177
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 3 cut(s) 92, 174, 177
FspBI CTAG 2 cut(s) 114, 120
GluI GCNGC 3 cut(s) 92, 174, 177
HaeIII GGCC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 31, 53, 94
HpyF3I CTNAG 2 cut(s) 155, 217
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 2 cut(s) 3, 213
LpnPI CCDG 2 cut(s) 10, 182
Lsp1109I GCAGC 2 cut(s) 78, 163
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 114, 120
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 5, 215
MboI GATC 2 cut(s) 3, 213
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 173
MunI CAATTG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 141
MvnI CGCG 1 cut(s) 173
NdeII GATC 2 cut(s) 3, 213
PceI AGGCCT 1 cut(s) 118
PctI GAATGC 1 cut(s) 141
PkrI GCNGC 3 cut(s) 93, 175, 178
PsuI RGATCY 1 cut(s) 213
SacII CCGCGG 1 cut(s) 174
SatI GCNGC 3 cut(s) 92, 174, 177
Sau3AI GATC 2 cut(s) 3, 213
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 1 cut(s) 18
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 3 cut(s) 14, 171, 173
SspI AATATT 2 cut(s) 47, 232
SspMI CTAG 2 cut(s) 114, 120
StuI AGGCCT 1 cut(s) 118
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 101
TauI GCSGC 1 cut(s) 176
TscAI CASTG 1 cut(s) 38
TseI GCWGC 2 cut(s) 91, 176
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 38
XspI CTAG 2 cut(s) 114, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.