Prupe.1G322500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015609
Physical Location & Seq
Reverse (-)
30834082 .. 30835313
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G322500.1

Sequence Viewer

Length: 474 bp
ATGTCTAGCACAGTGCTAATCTCTTCTCTTCACTCAGCTCTGCCACCACCAACACCGCCATGTTCCAATTCCGGCATTCATCGACCGCACCTGAAGACGGGGTTATTTGAGATGCAGAGGAGGAGGAGGAGGCATCCTTTGAAGATTTTCGCATCGTGCGGTCGTGATAACTACGATGGTAAACTTGTTGACGAAGACATGATTGTTCTTCGAATGCGAATTCACGACATGAAGATGGCAGCGGAGATGCAAGATGATGATCATAAACCCCCAGCAAATTGGATGCAATGGGAAAAGCGATATTATGATAATTACAATTCGGACATCTTTGAAGCCGTGGGGTTATTGCAAACCCATTTGATGAACACAAGGCCTTGCGTGGCTCTGGGAATGCTTGCTCTCATTACACTCAGCGTCCCAATTTCTACGGCTGCTTTGTTGGACATTTTCAAGGGGATCTTATTAGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.87

Weight (kDa)

8.5

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 56, 86, 159, 242
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 142, 332, 451
AluBI AGCT 2 cut(s) 38, 467
AluI AGCT 2 cut(s) 38, 467
AlwI GGATC 1 cut(s) 464
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 239, 431
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 146
AsuII TTCGAA 1 cut(s) 211
BbsI GAAGAC 2 cut(s) 101, 201
BbvI GCAGC 2 cut(s) 251, 418
BccI CCATC 2 cut(s) 170, 229
BceAI ACGGC 2 cut(s) 320, 444
BclI TGATCA 1 cut(s) 259
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 240, 432
BlsI GCNGC 2 cut(s) 241, 433
BmsI GCATC 5 cut(s) 102, 142, 161, 237, 273
BpiI GAAGAC 2 cut(s) 101, 201
Bpu14I TTCGAA 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 133, 288
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 48, 424
BseRI GAGGAG 4 cut(s) 133, 136, 139, 142
BseXI GCAGC 2 cut(s) 251, 418
BseYI CCCAGC 1 cut(s) 271
Bsh1285I CGRYCG 2 cut(s) 86, 163
BshFI GGCC 1 cut(s) 373
BsiEI CGRYCG 2 cut(s) 86, 163
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 3 cut(s) 75, 219, 396
BsnI GGCC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 211
Bsp143I GATC 2 cut(s) 259, 456
BspACI CCGC 4 cut(s) 56, 86, 159, 242
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 2 cut(s) 47, 423
BspPI GGATC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 259, 456
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 28, 33
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 34, 410
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 133, 288
BstKTI GATC 2 cut(s) 262, 459
BstMBI GATC 2 cut(s) 259, 456
BstMCI CGRYCG 2 cut(s) 86, 163
BstV1I GCAGC 2 cut(s) 251, 418
BstV2I GAAGAC 2 cut(s) 101, 201
BstX2I RGATCY 1 cut(s) 456
BstXI CCANNNNNNTGG 1 cut(s) 279
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 133, 288
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 396
CseI GACGC 1 cut(s) 403
CviAII CATG 3 cut(s) 60, 199, 229
CviJI RGCY 6 cut(s) 38, 335, 373, 383, 431, 467
CviKI_1 RGCY 6 cut(s) 38, 335, 373, 383, 431, 467
DdeI CTNAG 2 cut(s) 34, 410
DpnI GATC 2 cut(s) 261, 458
DpnII GATC 2 cut(s) 259, 456
Eam1104I CTCTTC 2 cut(s) 28, 33
EarI CTCTTC 2 cut(s) 28, 33
Eco147I AGGCCT 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 219
FaeI CATG 3 cut(s) 63, 202, 232
FaiI YATR 5 cut(s) 61, 200, 230, 264, 306
FalI AAGNNNNNCTT 1 cut(s) 443
FaqI GGGAC 1 cut(s) 401
FatI CATG 3 cut(s) 59, 198, 228
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 240, 432
FokI GGATG 2 cut(s) 120, 295
Fsp4HI GCNGC 2 cut(s) 240, 432
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 240, 432
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 63, 202, 232
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 182, 190
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 164, 224
Hpy8I GTNNAC 2 cut(s) 182, 190
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 115, 250, 286, 349
HpyF3I CTNAG 2 cut(s) 34, 410
Hsp92II CATG 3 cut(s) 63, 202, 232
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 456
LpnPI CCDG 4 cut(s) 85, 104, 285, 371
Lsp1109I GCAGC 2 cut(s) 251, 418
LweI GCATC 5 cut(s) 102, 142, 161, 237, 273
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 261, 458
MboI GATC 2 cut(s) 259, 456
MboII GAAGA 7 cut(s) 15, 20, 106, 154, 200, 206, 244
MflI RGATCY 1 cut(s) 456
MluCI AATT 6 cut(s) 67, 219, 277, 310, 316, 420
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 5 cut(s) 111, 114, 117, 120, 123
MroXI GAANNNNTTC 1 cut(s) 146
MslI CAYNNNNRTG 2 cut(s) 58, 233
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 72
Mva1269I GAATGC 3 cut(s) 75, 219, 396
NdeII GATC 2 cut(s) 259, 456
NlaIII CATG 3 cut(s) 63, 202, 232
NspV TTCGAA 1 cut(s) 211
PceI AGGCCT 1 cut(s) 373
PctI GAATGC 3 cut(s) 75, 219, 396
PdmI GAANNNNTTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 241, 433
PspFI CCCAGC 1 cut(s) 271
PsuI RGATCY 1 cut(s) 456
RseI CAYNNNNRTG 2 cut(s) 58, 233
SatI GCNGC 2 cut(s) 240, 432
Sau3AI GATC 2 cut(s) 259, 456
SetI ASST 3 cut(s) 40, 93, 469
SfaNI GCATC 5 cut(s) 102, 142, 161, 237, 273
SfuI TTCGAA 1 cut(s) 211
SmiMI CAYNNNNRTG 2 cut(s) 58, 233
Sse9I AATT 6 cut(s) 67, 219, 277, 310, 316, 420
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 4 cut(s) 56, 86, 159, 242
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 373
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 82, 211
TasI AATT 6 cut(s) 67, 219, 277, 310, 316, 420
TscAI CASTG 1 cut(s) 18
TseI GCWGC 2 cut(s) 239, 431
TspDTI ATGAA 3 cut(s) 68, 245, 377
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.