RLG00000006139

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015609
Physical Location & Seq
Forward (+)
4717383 .. 4717844
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006139

Sequence Viewer

Length: 462 bp
ATGACAACCTCTTCTCTTTGCTTGGCTGTCTCACCGAGACCGTGGTTCAATTCCGGCAATCAGACGTGCTCGAAGACGGGGCTTGTTCGTCTGCAGAGGAGACGAAGCCCTCTGAAGGTTTTTGCATCGTGTGATCGTGACAATCATGACGGTAGACTTGTCGACGAGGACATGATTGTTCTTAGGATGCGGATTCGTGACATTGAGATGACGGAGACGCGTGATCGGAATGGACCCCCGTCGAATTGGATGGAATGGGAGAAGCGATACCATGCAAATTACAGTTCAGATGTCTATGAAGCCGTCGGGTTGATGCAGTCACAATTGATGAACACTAGGCCTTCCTTGGCTTTGGGAATGCTTGCTCTTATTACACTTAGCGTGCCGGTCTCTACTGCTGCTTTGATGTCCCCTTTGTTGGACATTATTAAAGGAATATTAGCTAACGGGATTCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

8.95

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 154, 162
AccII CGCG 1 cut(s) 220
AciI CCGC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 115, 418
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 66
AluBI AGCT 2 cut(s) 443, 457
AluI AGCT 2 cut(s) 443, 457
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 5 cut(s) 31, 34, 94, 209, 394
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 287
BcoDI GTCTC 5 cut(s) 31, 34, 94, 209, 394
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 3 cut(s) 134, 177, 303
BoxI GACNNNNGTC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 80
BsaI GGTCTC 2 cut(s) 31, 394
BsaJI CCNNGG 2 cut(s) 41, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 418
Bse118I RCCGGY 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 41, 345
BseGI GGATG 2 cut(s) 192, 255
BseLI CCNNNNNNNGG 2 cut(s) 115, 418
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 54, 386
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 115, 418
BsmAI GTCTC 5 cut(s) 31, 34, 94, 209, 394
BsmBI CGTCTC 2 cut(s) 94, 209
BsmFI GGGAC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 2 cut(s) 31, 394
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 133, 223
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 340
BspFNI CGCG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 96
BspTNI GGTCTC 2 cut(s) 31, 394
BsrFI RCCGGY 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 41, 345
BssMI GATC 2 cut(s) 133, 223
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 42, 152, 284
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 363, 383
BstDEI CTNAG 2 cut(s) 182, 377
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 192, 255
BstFNI CGCG 1 cut(s) 220
BstKTI GATC 2 cut(s) 136, 226
BstMAI GTCTC 5 cut(s) 31, 34, 94, 209, 394
BstMBI GATC 2 cut(s) 133, 223
BstPAI GACNNNNGTC 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 92
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 192, 255
Cac8I GCNNGC 2 cut(s) 363, 383
CciI TCATGA 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 226
CviAII CATG 3 cut(s) 146, 172, 272
CviJI RGCY 8 cut(s) 26, 82, 108, 302, 340, 350, 443, 457
CviKI_1 RGCY 8 cut(s) 26, 82, 108, 302, 340, 350, 443, 457
DdeI CTNAG 2 cut(s) 182, 377
DpnI GATC 2 cut(s) 135, 225
DpnII GATC 2 cut(s) 133, 223
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 340
Eco31I GGTCTC 2 cut(s) 31, 394
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 2 cut(s) 94, 209
FaeI CATG 3 cut(s) 149, 175, 275
FaiI YATR 4 cut(s) 147, 173, 273, 297
FaqI GGGAC 1 cut(s) 394
FatI CATG 3 cut(s) 145, 171, 271
FblI GTMKAC 2 cut(s) 154, 162
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 199, 262
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 340
HapII CCGG 2 cut(s) 54, 386
HgaI GACGC 1 cut(s) 226
Hin1II CATG 3 cut(s) 149, 175, 275
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 193, 451
HpaII CCGG 2 cut(s) 54, 386
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 155, 163
Hpy188I TCNGA 4 cut(s) 63, 114, 228, 289
Hpy188III TCNNGA 3 cut(s) 137, 146, 197
Hpy8I GTNNAC 2 cut(s) 155, 163
Hpy99I CGWCG 3 cut(s) 167, 244, 308
HpyAV CCTTC 2 cut(s) 109, 351
HpyCH4III ACNGT 3 cut(s) 42, 152, 284
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 94, 125, 275, 316
HpyF3I CTNAG 2 cut(s) 182, 377
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 3 cut(s) 149, 175, 275
Kzo9I GATC 2 cut(s) 133, 223
LpnPI CCDG 2 cut(s) 67, 399
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 3 cut(s) 134, 177, 303
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 137, 197, 318
MalI GATC 2 cut(s) 135, 225
MboI GATC 2 cut(s) 133, 223
MboII GAAGA 2 cut(s) 3, 85
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 49, 244, 277, 323
MluI ACGCGT 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 4 cut(s) 19, 90, 120, 160
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 2 cut(s) 54, 386
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 363
MvnI CGCG 1 cut(s) 220
NdeII GATC 2 cut(s) 133, 223
NlaIII CATG 3 cut(s) 149, 175, 275
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 3 cut(s) 137, 197, 318
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 340
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 193, 451
PkrI GCNGC 1 cut(s) 400
PshAI GACNNNNGTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 206
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 133, 223
Sau96I GGNCC 1 cut(s) 233
SduI GDGCHC 1 cut(s) 71
SetI ASST 5 cut(s) 11, 68, 120, 445, 459
SfaNI GCATC 3 cut(s) 134, 177, 303
SfcI CTRYAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 4 cut(s) 49, 244, 277, 323
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 190
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 1 cut(s) 340
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 3 cut(s) 42, 152, 284
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 71, 162, 242
TasI AATT 4 cut(s) 49, 244, 277, 323
TfiI GAWTC 2 cut(s) 193, 451
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 3 cut(s) 137, 197, 318
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 3 cut(s) 137, 197, 318
TspDTI ATGAA 2 cut(s) 312, 344
TspGWI ACGGA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 154, 162
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.