RchiOBHm_Chr4g0440931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015609
Physical Location & Seq
Reverse (-)
62856628 .. 62857297
670 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40885

Sequence Viewer

Length: 474 bp
ATGTCTAAAGCGATGACAACCTCTTCTCTTTGCTTGGCTGTCTCACCGAGACCGTGGTTCAATTCCGGCAATCAGACGTGCTCGAAGACGGGGCTTGTTCGTCTGCAGAGGAGACGAAGCCCTCTGAAGGTTTTTGCATCGTGTGATCGTGACAATCATGACGGTAGACTTGTCGACGAGGACATGATTGTTCTTAGGATGCGGATTCGTGACATTGAGATGACGGAAACACGTGATCCGAATCGACCCCCGTCGAATTGGATGGAATGGGAGAAGCGATACCATGCAAATTACAATTCGGATGTCTATGAAGCCGTCGGGTTGTTGCAGTCACAATTGATGAACACTAGGCCTTCCTTGGCTTTGGGAATGCTTGCTCTTATTACACTTAGCGTGCCGGTCTCTACTGCTGCTTTGATGTCCCCTTTGTTGGACATTATTAAAGGAATATTAGCTAACGGGATTCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

9.21

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 166, 174
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 146
AcvI CACGTG 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 127, 430
AflIII ACRYGT 1 cut(s) 230
AgsI TTSAA 1 cut(s) 61
AjiI CACGTC 1 cut(s) 78
AluBI AGCT 2 cut(s) 455, 469
AluI AGCT 2 cut(s) 455, 469
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 4 cut(s) 43, 46, 106, 406
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 36
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 299
BcoDI GTCTC 4 cut(s) 43, 46, 106, 406
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 78
BmsI GCATC 2 cut(s) 146, 189
BoxI GACNNNNGTC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 43, 406
BsaJI CCNNGG 2 cut(s) 53, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 430
Bse118I RCCGGY 1 cut(s) 397
Bse8I GATNNNNATC 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 53, 357
BseGI GGATG 3 cut(s) 204, 267, 307
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 127, 430
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 66, 398
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 127, 430
BsmAI GTCTC 4 cut(s) 43, 46, 106, 406
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 406
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 352
Bso31I GGTCTC 2 cut(s) 43, 406
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 145, 235
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 352
BspHI TCATGA 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 2 cut(s) 43, 406
BsrFI RCCGGY 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 53, 357
BssMI GATC 2 cut(s) 145, 235
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 54, 164
Bst6I CTCTTC 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 375, 395
BstDEI CTNAG 2 cut(s) 194, 389
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 204, 267, 307
BstKTI GATC 2 cut(s) 148, 238
BstMAI GTCTC 4 cut(s) 43, 46, 106, 406
BstMBI GATC 2 cut(s) 145, 235
BstPAI GACNNNNGTC 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 26
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 204, 267, 307
Cac8I GCNNGC 2 cut(s) 375, 395
CciI TCATGA 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 397
CviAII CATG 3 cut(s) 158, 184, 284
CviJI RGCY 8 cut(s) 38, 94, 120, 314, 352, 362, 455, 469
CviKI_1 RGCY 8 cut(s) 38, 94, 120, 314, 352, 362, 455, 469
DdeI CTNAG 2 cut(s) 194, 389
DpnI GATC 2 cut(s) 147, 237
DpnII GATC 2 cut(s) 145, 235
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 352
Eco31I GGTCTC 2 cut(s) 43, 406
Eco57I CTGAAG 1 cut(s) 146
Eco72I CACGTG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 161, 187, 287
FaiI YATR 4 cut(s) 159, 185, 285, 309
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 157, 183, 283
FblI GTMKAC 2 cut(s) 166, 174
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 3 cut(s) 211, 274, 314
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 352
HapII CCGG 2 cut(s) 66, 398
Hin1II CATG 3 cut(s) 161, 187, 287
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 205, 241, 463
HpaII CCGG 2 cut(s) 66, 398
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 167, 175
Hpy188I TCNGA 4 cut(s) 75, 126, 240, 301
Hpy188III TCNNGA 3 cut(s) 149, 158, 209
Hpy8I GTNNAC 2 cut(s) 167, 175
Hpy99I CGWCG 3 cut(s) 179, 256, 320
HpyAV CCTTC 2 cut(s) 121, 363
HpyCH4III ACNGT 2 cut(s) 54, 164
HpyCH4IV ACGT 2 cut(s) 77, 232
HpyCH4V TGCA 4 cut(s) 106, 137, 287, 328
HpyF3I CTNAG 2 cut(s) 194, 389
HpySE526I ACGT 2 cut(s) 77, 232
Hsp92II CATG 3 cut(s) 161, 187, 287
Kzo9I GATC 2 cut(s) 145, 235
LpnPI CCDG 2 cut(s) 79, 411
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 146, 189
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 77, 232
MaeIII GTNAC 3 cut(s) 149, 209, 330
MalI GATC 2 cut(s) 147, 237
MboI GATC 2 cut(s) 145, 235
MboII GAAGA 2 cut(s) 15, 97
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 5 cut(s) 61, 256, 289, 295, 335
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 4 cut(s) 31, 102, 132, 172
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 66, 398
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 375
NdeII GATC 2 cut(s) 145, 235
NlaIII CATG 3 cut(s) 161, 187, 287
NmuCI GTSAC 3 cut(s) 149, 209, 330
PagI TCATGA 1 cut(s) 157
PceI AGGCCT 1 cut(s) 352
PctI GAATGC 1 cut(s) 375
PfeI GAWTC 3 cut(s) 205, 241, 463
PkrI GCNGC 1 cut(s) 412
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 250
PspCI CACGTG 1 cut(s) 233
PstI CTGCAG 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 218
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 145, 235
SduI GDGCHC 1 cut(s) 83
SetI ASST 6 cut(s) 23, 80, 132, 235, 457, 471
SfaNI GCATC 2 cut(s) 146, 189
SfcI CTRYAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 5 cut(s) 61, 256, 289, 295, 335
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 1 cut(s) 202
SspI AATATT 1 cut(s) 450
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 352
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 54, 164
TaiI ACGT 2 cut(s) 80, 235
TaqI TCGA 4 cut(s) 83, 174, 244, 254
TasI AATT 5 cut(s) 61, 256, 289, 295, 335
TfiI GAWTC 3 cut(s) 205, 241, 463
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseFI GTSAC 3 cut(s) 149, 209, 330
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 3 cut(s) 149, 209, 330
TspDTI ATGAA 2 cut(s) 324, 356
TspGWI ACGGA 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 166, 174
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.