Rmu_sc0005054.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005054.1
OG0015609
Physical Location & Seq
Forward (+)
3108 .. 3569
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005054.1_g000002.1.cds

Sequence Viewer

Length: 462 bp
atgacaacctcttctctttgcttggctgtctcaccgagaccgtggttcaattccggcaatcagacgtgcttgaagacggggcttgttcgtctgcagaggagacgaagccccctgaaggtttttgcatcgtgtgatcgtgacaatcatgacggtagacttgtcgacgaggccatgattgttcttaggatgcggattcgtgacattgagatgacgaaaacacgtgatccggatcgacccccgtcgaattggatggaatgggagaagcgataccatgcaaattacaattcggatgtctatgaagccgtcgggttgttgcagtcacagttgatgaacactaggccttccttggctttgggaatgcttgctcttattacacttagcgtgccggtctctactgctgctttgatgtcccctttgttggacattattaaaggaatattagctaacgggattcagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.26

Weight (kDa)

9.45

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 154, 162
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 218, 237
AcuI CTGAAG 1 cut(s) 134
AcvI CACGTG 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 115, 418
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 2 cut(s) 49, 73
AjiI CACGTC 1 cut(s) 66
AluBI AGCT 2 cut(s) 443, 457
AluI AGCT 2 cut(s) 443, 457
Alw26I GTCTC 4 cut(s) 31, 34, 94, 394
AlwI GGATC 2 cut(s) 218, 237
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 168, 338
ApeKI GCWGC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 24
BbrPI CACGTG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 287
BcoDI GTCTC 4 cut(s) 31, 34, 94, 394
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 66
BmsI GCATC 2 cut(s) 134, 177
BoxI GACNNNNGTC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 31, 394
BsaJI CCNNGG 2 cut(s) 41, 345
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 418
Bse118I RCCGGY 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 41, 345
BseGI GGATG 3 cut(s) 192, 255, 295
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 115, 418
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 2 cut(s) 170, 340
BsiSI CCGG 3 cut(s) 54, 227, 386
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 115, 418
BsmAI GTCTC 4 cut(s) 31, 34, 94, 394
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 2 cut(s) 170, 340
Bso31I GGTCTC 2 cut(s) 31, 394
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 133, 223, 229
BspACI CCGC 1 cut(s) 190
BspANI GGCC 2 cut(s) 170, 340
BspEI TCCGGA 1 cut(s) 226
BspHI TCATGA 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 96
BspPI GGATC 2 cut(s) 218, 237
BspTNI GGTCTC 2 cut(s) 31, 394
BsrFI RCCGGY 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 41, 345
BssMI GATC 3 cut(s) 133, 223, 229
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 42, 152, 324
Bst6I CTCTTC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 363, 383
BstDEI CTNAG 2 cut(s) 182, 377
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 3 cut(s) 192, 255, 295
BstKTI GATC 3 cut(s) 136, 226, 232
BstMAI GTCTC 4 cut(s) 31, 34, 94, 394
BstMBI GATC 3 cut(s) 133, 223, 229
BstPAI GACNNNNGTC 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 170, 340
BtgI CCRYGG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 3 cut(s) 192, 255, 295
Cac8I GCNNGC 2 cut(s) 363, 383
CciI TCATGA 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 385
CviAII CATG 3 cut(s) 146, 172, 272
CviJI RGCY 9 cut(s) 26, 82, 108, 170, 302, 340, 350, 443, 457
CviKI_1 RGCY 9 cut(s) 26, 82, 108, 170, 302, 340, 350, 443, 457
DdeI CTNAG 2 cut(s) 182, 377
DpnI GATC 3 cut(s) 135, 225, 231
DpnII GATC 3 cut(s) 133, 223, 229
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 340
Eco31I GGTCTC 2 cut(s) 31, 394
Eco57I CTGAAG 1 cut(s) 134
Eco72I CACGTG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 3 cut(s) 149, 175, 275
FaiI YATR 4 cut(s) 147, 173, 273, 297
FaqI GGGAC 1 cut(s) 394
FatI CATG 3 cut(s) 145, 171, 271
FblI GTMKAC 2 cut(s) 154, 162
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 3 cut(s) 199, 262, 302
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 2 cut(s) 170, 340
HapII CCGG 3 cut(s) 54, 227, 386
Hin1II CATG 3 cut(s) 149, 175, 275
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 193, 451
HpaII CCGG 3 cut(s) 54, 227, 386
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 155, 163
Hpy188I TCNGA 2 cut(s) 63, 289
Hpy188III TCNNGA 4 cut(s) 137, 146, 197, 227
Hpy8I GTNNAC 2 cut(s) 155, 163
Hpy99I CGWCG 3 cut(s) 167, 244, 308
HpyAV CCTTC 2 cut(s) 109, 351
HpyCH4III ACNGT 3 cut(s) 42, 152, 324
HpyCH4IV ACGT 2 cut(s) 65, 220
HpyCH4V TGCA 4 cut(s) 94, 125, 275, 316
HpyF3I CTNAG 2 cut(s) 182, 377
HpySE526I ACGT 2 cut(s) 65, 220
Hsp92II CATG 3 cut(s) 149, 175, 275
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 133, 223, 229
LpnPI CCDG 4 cut(s) 67, 125, 240, 399
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 134, 177
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 65, 220
MaeIII GTNAC 3 cut(s) 137, 197, 318
MalI GATC 3 cut(s) 135, 225, 231
MboI GATC 3 cut(s) 133, 223, 229
MboII GAAGA 2 cut(s) 3, 85
MluCI AATT 4 cut(s) 49, 244, 277, 283
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 3 cut(s) 19, 90, 160
MroI TCCGGA 1 cut(s) 226
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 3 cut(s) 54, 227, 386
Mva1269I GAATGC 1 cut(s) 363
NdeII GATC 3 cut(s) 133, 223, 229
NlaIII CATG 3 cut(s) 149, 175, 275
NmuCI GTSAC 3 cut(s) 137, 197, 318
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 340
PctI GAATGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 193, 451
PkrI GCNGC 1 cut(s) 400
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 221
PshAI GACNNNNGTC 1 cut(s) 238
PspCI CACGTG 1 cut(s) 221
PstI CTGCAG 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 206
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 3 cut(s) 133, 223, 229
SetI ASST 6 cut(s) 11, 68, 120, 223, 445, 459
SfaNI GCATC 2 cut(s) 134, 177
SfcI CTRYAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 4 cut(s) 49, 244, 277, 283
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 190
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 1 cut(s) 340
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 3 cut(s) 42, 152, 324
TaiI ACGT 2 cut(s) 68, 223
TaqI TCGA 3 cut(s) 162, 232, 242
TasI AATT 4 cut(s) 49, 244, 277, 283
TfiI GAWTC 2 cut(s) 193, 451
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 3 cut(s) 137, 197, 318
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 3 cut(s) 137, 197, 318
TspDTI ATGAA 2 cut(s) 312, 344
XmiI GTMKAC 2 cut(s) 154, 162
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.