pycom16g02650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015609
Physical Location & Seq
Forward (+)
1719359 .. 1719919
561 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02650.1

Sequence Viewer

Length: 561 bp
ATGTACCATGTACGAACCTCGTTGTCAAACAAAAACACACATCAAAATCTTAAATCGTCAAACTTTCGAGAAGCTGCAAGCTTTGTCATCATGTCTACATCAACGCAAACCTGTGCTCTTCTCTCAGCTCCGCCACCGCCGCGGCGTTTCATTTCCGGCGTTAACCGAAAGACCGGGTTGCTGGAAATGCGGCGTAGGCGTCGTCCTCTGACGATTTCTGCGTCGTCGCGTGGTCCTGATAATTACGACGGTAGACTTGTGGACGAGGACATGATTGTGCTTCGGATGCGAATTCACGACACGGAGATGCTGCAGGAAGACAATCACCAACCGCCGTCGAACTGGATGCGGTGGGAGAAGCAATATTATGCACACTACAACTCGGACATCTGCAAAGGCGTGGGGTTGTTGCAATCCCAATTGATGAACACTAGGCCAAGCGTGGCGTTGGGAATGCTAGCTCTTGTTACAATTAGCGTGCCAATATCCACGGCTGCTTTGATGTTCCCATTGCTGGACATCTTTAAGGGGATCTTAGGCAGTGGGAATATTCACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.06

Weight (kDa)

9.93

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 95, 253
AccII CGCG 2 cut(s) 142, 229
AciI CCGC 7 cut(s) 131, 137, 140, 142, 190, 332, 349
AclWI GGATC 1 cut(s) 539
AcsI RAATTY 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 2 cut(s) 5, 12
AfiI CCNNNNNNNGG 1 cut(s) 514
AluBI AGCT 4 cut(s) 74, 81, 128, 461
AluI AGCT 4 cut(s) 74, 81, 128, 461
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 1 cut(s) 539
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 3 cut(s) 74, 310, 494
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 317
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 61, 297, 481
BceAI ACGGC 2 cut(s) 319, 507
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 2 cut(s) 432, 458
BfmI CTRYAG 1 cut(s) 311
BisI GCNGC 6 cut(s) 75, 140, 143, 191, 311, 495
BlsI GCNGC 6 cut(s) 76, 141, 144, 192, 312, 496
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 3 cut(s) 276, 297, 336
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 140, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 140, 489
BseGI GGATG 2 cut(s) 291, 351
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 3 cut(s) 61, 297, 481
Bsh1236I CGCG 2 cut(s) 142, 229
BshFI GGCC 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 2 cut(s) 156, 174
BslI CCNNNNNNNGG 1 cut(s) 514
BsmI GAATGC 1 cut(s) 459
BsnI GGCC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 7 cut(s) 131, 137, 140, 142, 190, 332, 349
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 137
BspFNI CGCG 2 cut(s) 142, 229
BspMAI CTGCAG 1 cut(s) 315
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 539
BspQI GCTCTTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 140, 489
BssMI GATC 1 cut(s) 531
BssNI GRCGYC 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 79, 459, 479
BstDEI CTNAG 2 cut(s) 124, 535
BstDSI CCRYGG 2 cut(s) 140, 489
BstF5I GGATG 2 cut(s) 291, 351
BstFNI CGCG 2 cut(s) 142, 229
BstKTI GATC 1 cut(s) 534
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 4 cut(s) 139, 187, 196, 286
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 311
BstUI CGCG 2 cut(s) 142, 229
BstV1I GCAGC 3 cut(s) 61, 297, 481
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 1 cut(s) 436
BtgI CCRYGG 2 cut(s) 140, 489
BtsCI GGATG 2 cut(s) 291, 351
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 79, 459, 479
Cfr13I GGNCC 1 cut(s) 233
Cfr42I CCGCGG 1 cut(s) 143
CseI GACGC 2 cut(s) 188, 210
Csp6I GTAC 2 cut(s) 4, 11
CviAII CATG 3 cut(s) 8, 91, 271
CviJI RGCY 6 cut(s) 74, 81, 128, 436, 461, 494
CviKI_1 RGCY 6 cut(s) 74, 81, 128, 436, 461, 494
CviQI GTAC 2 cut(s) 4, 11
DdeI CTNAG 2 cut(s) 124, 535
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 291
FaeI CATG 3 cut(s) 11, 94, 274
FaiI YATR 4 cut(s) 9, 92, 272, 369
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FatI CATG 3 cut(s) 7, 90, 270
FblI GTMKAC 2 cut(s) 95, 253
Fnu4HI GCNGC 6 cut(s) 75, 140, 143, 191, 311, 495
FokI GGATG 2 cut(s) 298, 358
Fsp4HI GCNGC 6 cut(s) 75, 140, 143, 191, 311, 495
FspBI CTAG 2 cut(s) 432, 458
GluI GCNGC 6 cut(s) 75, 140, 143, 191, 311, 495
HaeIII GGCC 1 cut(s) 436
HapII CCGG 2 cut(s) 156, 174
HgaI GACGC 2 cut(s) 188, 210
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 3 cut(s) 11, 94, 274
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 79
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 2 cut(s) 156, 174
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 4 cut(s) 96, 163, 254, 262
Hpy188I TCNGA 3 cut(s) 210, 285, 385
Hpy188III TCNNGA 3 cut(s) 68, 236, 296
Hpy8I GTNNAC 4 cut(s) 96, 163, 254, 262
Hpy99I CGWCG 5 cut(s) 204, 226, 229, 251, 340
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 5 cut(s) 77, 313, 371, 393, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 187, 196, 286
HpyF3I CTNAG 2 cut(s) 124, 535
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 3 cut(s) 11, 94, 274
KspAI GTTAAC 1 cut(s) 163
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 531
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 124, 167, 169, 187, 249, 299, 328, 500
Lsp1109I GCAGC 3 cut(s) 61, 297, 481
LweI GCATC 3 cut(s) 276, 297, 336
MaeI CTAG 2 cut(s) 432, 458
MaeIII GTNAC 1 cut(s) 466
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 2 cut(s) 110, 329
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 4 cut(s) 241, 291, 419, 471
MnlI CCTC 3 cut(s) 28, 216, 259
MseI TTAA 3 cut(s) 51, 162, 525
MslI CAYNNNNRTG 2 cut(s) 275, 305
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 2 cut(s) 156, 174
MspR9I CCNGG 1 cut(s) 175
MunI CAATTG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 459
MvnI CGCG 2 cut(s) 142, 229
MwoI GCNNNNNNNGC 4 cut(s) 139, 187, 196, 286
NciI CCSGG 1 cut(s) 175
NdeII GATC 1 cut(s) 531
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 3 cut(s) 11, 94, 274
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 1 cut(s) 459
PkrI GCNGC 6 cut(s) 76, 141, 144, 192, 312, 496
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 315
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 2 cut(s) 5, 12
RsaNI GTAC 2 cut(s) 4, 11
RseI CAYNNNNRTG 2 cut(s) 275, 305
SacII CCGCGG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 51, 162, 525
SatI GCNGC 6 cut(s) 75, 140, 143, 191, 311, 495
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 20, 76, 83, 113, 130, 463
SfaNI GCATC 3 cut(s) 276, 297, 336
SfcI CTRYAG 1 cut(s) 311
Sfr303I CCGCGG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 275, 305
Sse9I AATT 4 cut(s) 241, 291, 419, 471
SsiI CCGC 7 cut(s) 131, 137, 140, 142, 190, 332, 349
SspI AATATT 2 cut(s) 365, 550
SspMI CTAG 2 cut(s) 432, 458
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 2 cut(s) 67, 338
TasI AATT 4 cut(s) 241, 291, 419, 471
TauI GCSGC 3 cut(s) 142, 145, 193
Tru1I TTAA 3 cut(s) 51, 162, 525
Tru9I TTAA 3 cut(s) 51, 162, 525
TscAI CASTG 1 cut(s) 547
TseI GCWGC 3 cut(s) 74, 310, 494
TspDTI ATGAA 2 cut(s) 139, 440
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 291
XmiI GTMKAC 2 cut(s) 95, 253
XspI CTAG 2 cut(s) 432, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.