Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019229

Physical Location & Seq

Genomic Coordinates Reverse (-)

4013388 .. 4013932

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1057300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGAACTTCGCACTTATTGAAGCAAAGATTGCTCTGTCAATGATTCTGCAGCGCTACCATTTCACCCTTTCCCCGGGTTATGTACACTCACCCATTCAGTTTCTGACAGTTCGCCCACAACATGGAGTTCCAGTGATGCTACGCCCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

51

Amino Acids

5.73

Weight (kDa)

10.27

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29180
malus_domestica	MD13G1057300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339421 RchiOBHm_Chr2g0110971 RchiOBHm_Chr4g0437461
rosa_multiflora	Rmu_sc0002472.1_g000007 Rmu_sc0002638.1_g000038 Rmu_sc0036394.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	73, 122
AgsI	TTSAA	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	2 cut(s)	74, 75
AsuHPI	GGTGA	2 cut(s)	55, 81
AvaI	CYCGRG	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	74, 75
BfmI	CTRYAG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	74, 75
BmeT110I	CYCGRG	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	74, 75
BmsI	GCATC	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	74, 75
BsaJI	CCNNGG	2 cut(s)	72, 73
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 122
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	72, 73
BseLI	CCNNNNNNNGG	2 cut(s)	73, 122
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	73, 122
BsoBI	CYCGRG	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	82
BspMAI	CTGCAG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	72, 73
Bst4CI	ACNGT	2 cut(s)	109, 150
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	72, 73
BstSFI	CTRYAG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	138, 146
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	1 cut(s)	54
Cfr9I	CCCGGG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	122
CviQI	GTAC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	73
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	81, 123
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	55
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	55, 81
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	109, 150
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	87, 144
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	126
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 75
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	2 cut(s)	74, 75
NlaIII	CATG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	74, 75
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	47
SgeI	CNNG	5 cut(s)	85, 86, 87, 134, 143
SmaI	CCCGGG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	72, 73
TaaI	ACNGT	2 cut(s)	109, 150
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	2 cut(s)	138, 153
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	73
TspRI	CASTG	2 cut(s)	138, 153
Van91I	CCANNNNNTGG	1 cut(s)	122
XmaI	CCCGGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.