Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002472.1

Orthogroup ID

OG0019229

Physical Location & Seq

Genomic Coordinates Forward (+)

12004 .. 12294

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002472.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgaccttcaattctggggacaagacgcatatcttttcaaaccagaccgattctcacaaggagttgctaaagcaactaacaacaacatggcgacattcttaccatttgaaatgtgacctaggaattgtgtatgtaggccttcactttggcaccactgaagccaagattgctctttcaatgatcctacagcgctacttctttacgctgtctcagggttatgttcactcgcccttgaggcagctggcactgcgcccacggcatggagttcaagtaatgctacactcgctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

9.73

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29180
malus_domestica	MD13G1057300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339421 RchiOBHm_Chr2g0110971 RchiOBHm_Chr4g0437461
rosa_multiflora	Rmu_sc0002472.1_g000007 Rmu_sc0002638.1_g000038 Rmu_sc0036394.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	260
AclWI	GGATC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	177
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	10, 39, 109, 177, 269
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	238
AspA2I	CCTAGG	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	192, 252
AvrII	CCTAGG	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	239
BlnI	CCTAGG	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	118, 254
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	118, 254
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	118, 254
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 252
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 283
BstSFI	CTRYAG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	153, 245
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	2 cut(s)	192, 252
CseI	GACGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	87, 260
CviJI	RGCY	3 cut(s)	138, 161, 241
CviKI_1	RGCY	3 cut(s)	138, 161, 241
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	138
Eco47III	AGCGCT	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	90, 263
FaiI	YATR	5 cut(s)	30, 88, 132, 219, 261
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	86, 259
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	2 cut(s)	191, 251
GluI	GCNGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	192, 252
Hin1II	CATG	2 cut(s)	90, 263
Hin6I	GCGC	2 cut(s)	190, 250
HinP1I	GCGC	2 cut(s)	190, 250
HinfI	GANTC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	16, 149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 283
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	90, 263
HspAI	GCGC	2 cut(s)	190, 250
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	3 cut(s)	56, 197, 227
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MluCI	AATT	2 cut(s)	10, 123
MnlI	CCTC	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	241
MwoI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 283
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	90, 263
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	241
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	180
SetI	ASST	3 cut(s)	8, 120, 243
SfcI	CTRYAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	10, 123
SseBI	AGGCCT	1 cut(s)	138
SspMI	CTAG	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	118
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	10, 123
TfiI	GAWTC	1 cut(s)	50
TscAI	CASTG	2 cut(s)	160, 252
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	113
TspRI	CASTG	2 cut(s)	160, 252
Van91I	CCANNNNNTGG	1 cut(s)	260
XmaJI	CCTAGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.