Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019229

Physical Location & Seq

Genomic Coordinates Reverse (-)

60541040 .. 60541270

Gene Structure 231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGGCCTAGAATTTGTGCAGGCTTCAACTTTGCAACCGTTGAAGCAAAGATTGCTCTGTCAATGACTCTACAGCGCTACAGCCTCACCCTTTCCCCAGGTTATGCTCACTCTCCCCATCAATATCACACTATTCGCCCACAACATGGGGTTCAGGTGATGCTCCACCCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

58

Amino Acids

6.47

Weight (kDa)

9.62

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 40	1.8e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29180
malus_domestica	MD13G1057300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339421 RchiOBHm_Chr2g0110971 RchiOBHm_Chr4g0437461
rosa_multiflora	Rmu_sc0002472.1_g000007 Rmu_sc0002638.1_g000038 Rmu_sc0036394.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	12
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	28, 44
AjnI	CCWGG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	2 cut(s)	79, 169
BccI	CCATC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	99
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	71, 79
BfoI	RGCGCY	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	40, 174
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	2 cut(s)	71, 79
BsuRI	GGCC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	5
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	3 cut(s)	7, 24, 84
CviKI_1	RGCY	3 cut(s)	7, 24, 84
Eco47III	AGCGCT	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	149
FaiI	YATR	2 cut(s)	105, 147
FatI	CATG	1 cut(s)	145
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	79, 169
HpyCH4III	ACNGT	2 cut(s)	40, 174
HpyCH4V	TGCA	2 cut(s)	20, 35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	4 cut(s)	6, 84, 111, 140
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	9
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	146
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	2 cut(s)	103, 159
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	2 cut(s)	71, 79
SgeI	CNNG	6 cut(s)	21, 33, 110, 111, 158, 167
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	40, 174
TasI	AATT	1 cut(s)	12
TscAI	CASTG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.