Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002638.1

Orthogroup ID

OG0019229

Physical Location & Seq

Genomic Coordinates Reverse (-)

125117 .. 126924

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002638.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaccttcaattctggggacaagacgcatatcttttcaaaccagaccgattctcacaaggagttgctaaagcaactaacaacaacatggcgacattcttaccatttgaaatgtgacctaggaattgtgtatgtaggccttcactttggcaccactgaagccaagattgctctttcaatgatcctacagcgctacttctttacgctgtctcagggttatgttcactcgcccttgaggcagctggcactgcgcccacggcatggagttcaagtcttggtcaatcaagcaaaacctagctctagggttttgagcatagcccatcgcggcgcggctattaagccttctcaccggctagtccctcgtcgtggatcagagacaggcgctaaaggcgttggggttcgatcggagctcggtcacagcgttcttgatcgggctcgaggaggcagagtgcaggaggtgacttctggcggatctgactgggagttctgtgttgcctggttgcgtggagtccaggaagcatcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

174

Amino Acids

19.33

Weight (kDa)

10.27

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29180
malus_domestica	MD13G1057300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339421 RchiOBHm_Chr2g0110971 RchiOBHm_Chr4g0437461
rosa_multiflora	Rmu_sc0002472.1_g000007 Rmu_sc0002638.1_g000038 Rmu_sc0036394.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	2 cut(s)	324, 329
AciI	CCGC	3 cut(s)	324, 329, 468
AclWI	GGATC	3 cut(s)	175, 376, 478
AcuI	CTGAAG	1 cut(s)	177
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	260, 365
AgsI	TTSAA	5 cut(s)	10, 39, 109, 177, 269
AjnI	CCWGG	2 cut(s)	494, 510
AluBI	AGCT	3 cut(s)	241, 297, 409
AluI	AGCT	3 cut(s)	241, 297, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	213, 368
AlwI	GGATC	3 cut(s)	175, 376, 478
Ama87I	CYCGRG	1 cut(s)	435
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	238
AspA2I	CCTAGG	1 cut(s)	118
AspLEI	GCGC	4 cut(s)	192, 252, 329, 383
AsuHPI	GGTGA	2 cut(s)	338, 469
AvaI	CYCGRG	1 cut(s)	435
AvrII	CCTAGG	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	411, 436
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	496, 512
BcoDI	GTCTC	2 cut(s)	213, 368
BfaI	CTAG	4 cut(s)	119, 294, 300, 353
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	193, 384
BglI	GCCNNNNNGGC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	239, 325, 330
BlnI	CCTAGG	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	240, 326, 331
Bme1390I	CCNGG	2 cut(s)	496, 512
BmeT110I	CYCGRG	1 cut(s)	435
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	496, 512
BmrI	ACTGGG	1 cut(s)	487
BmuI	ACTGGG	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	118, 254
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 365
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	2 cut(s)	496, 512
BseDI	CCNNGG	2 cut(s)	118, 254
BseLI	CCNNNNNNNGG	2 cut(s)	260, 365
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	324, 329
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	32, 341
BslI	CCNNNNNNNGG	2 cut(s)	260, 365
BsmAI	GTCTC	2 cut(s)	213, 368
BsmFI	GGGAC	2 cut(s)	32, 341
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	411, 436
Bsp143I	GATC	5 cut(s)	180, 368, 401, 427, 470
BspACI	CCGC	3 cut(s)	324, 329, 468
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	324, 329
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	3 cut(s)	175, 376, 478
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	118, 254
BssMI	GATC	5 cut(s)	180, 368, 401, 427, 470
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	496, 512
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	324, 329
BstH2I	RGCGCY	2 cut(s)	193, 384
BstHHI	GCGC	4 cut(s)	192, 252, 329, 383
BstKTI	GATC	5 cut(s)	183, 371, 404, 430, 473
BstMAI	GTCTC	2 cut(s)	213, 368
BstMBI	GATC	5 cut(s)	180, 368, 401, 427, 470
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 387
BstNI	CCWGG	2 cut(s)	496, 512
BstSCI	CCNGG	2 cut(s)	494, 510
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	2 cut(s)	324, 329
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	305
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	153, 245
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	4 cut(s)	192, 252, 329, 383
Cfr10I	RCCGGY	1 cut(s)	348
CseI	GACGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	87, 260
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	5 cut(s)	182, 370, 403, 429, 472
DpnII	GATC	5 cut(s)	180, 368, 401, 427, 470
EciI	GGCGGA	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	411, 436
Eco47III	AGCGCT	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	435
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	494, 510
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	2 cut(s)	411, 436
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	90, 263
FaiI	YATR	6 cut(s)	30, 88, 132, 219, 261, 314
FaqI	GGGAC	2 cut(s)	32, 341
FatI	CATG	2 cut(s)	86, 259
Fnu4HI	GCNGC	3 cut(s)	239, 325, 330
FriOI	GRGCYC	2 cut(s)	411, 436
Fsp4HI	GCNGC	3 cut(s)	239, 325, 330
FspBI	CTAG	4 cut(s)	119, 294, 300, 353
GlaI	GCGC	4 cut(s)	191, 251, 328, 382
GluI	GCNGC	3 cut(s)	239, 325, 330
HaeII	RGCGCY	2 cut(s)	193, 384
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	4 cut(s)	192, 252, 329, 383
Hin1II	CATG	2 cut(s)	90, 263
Hin6I	GCGC	4 cut(s)	190, 250, 327, 381
HinP1I	GCGC	4 cut(s)	190, 250, 327, 381
HinfI	GANTC	2 cut(s)	50, 507
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	338, 469
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	373, 406, 475
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	16, 149, 351
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 387
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	90, 263
HspAI	GCGC	4 cut(s)	190, 250, 327, 381
Kzo9I	GATC	5 cut(s)	180, 368, 401, 427, 470
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	4 cut(s)	119, 294, 300, 353
MaeIII	GTNAC	3 cut(s)	113, 413, 457
MalI	GATC	5 cut(s)	182, 370, 403, 429, 472
MboI	GATC	5 cut(s)	180, 368, 401, 427, 470
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	411, 436
MluCI	AATT	2 cut(s)	10, 123
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	5 cut(s)	228, 369, 431, 434, 448
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	2 cut(s)	496, 512
MvaI	CCWGG	2 cut(s)	496, 512
MvnI	CGCG	2 cut(s)	324, 329
MwoI	GCNNNNNNNGC	5 cut(s)	167, 235, 247, 256, 387
NdeII	GATC	5 cut(s)	180, 368, 401, 427, 470
NlaIII	CATG	2 cut(s)	90, 263
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	3 cut(s)	113, 413, 457
PaeR7I	CTCGAG	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	50
PflMI	CCANNNNNTGG	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	3 cut(s)	240, 326, 331
Ple19I	CGATCG	1 cut(s)	404
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	494, 510
PspGI	CCWGG	2 cut(s)	494, 510
PspN4I	GGNNCC	1 cut(s)	151
PspXI	VCTCGAGB	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	470
PvuI	CGATCG	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	3 cut(s)	239, 325, 330
Sau3AI	GATC	5 cut(s)	180, 368, 401, 427, 470
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	2 cut(s)	496, 512
SduI	GDGCHC	2 cut(s)	411, 436
SetI	ASST	7 cut(s)	8, 120, 243, 295, 299, 411, 459
SfcI	CTRYAG	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	435
SlaI	CTCGAG	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	232, 435
SmoI	CTYRAG	2 cut(s)	232, 435
Sse9I	AATT	2 cut(s)	10, 123
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	3 cut(s)	324, 329, 468
SspMI	CTAG	4 cut(s)	119, 294, 300, 353
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	494, 510
StyI	CCWWGG	1 cut(s)	118
TaqI	TCGA	2 cut(s)	400, 436
TaqII	GACCGA	2 cut(s)	62, 401
TasI	AATT	2 cut(s)	10, 123
TauI	GCSGC	2 cut(s)	327, 332
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	160, 252
TseFI	GTSAC	3 cut(s)	113, 413, 457
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	3 cut(s)	113, 413, 457
TspRI	CASTG	2 cut(s)	160, 252
Van91I	CCANNNNNTGG	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	118
XspI	CTAG	4 cut(s)	119, 294, 300, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.