Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019229

Physical Location & Seq

Genomic Coordinates Forward (+)

22629464 .. 22629640

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGACATAGGAATTGTGTGGGCACTAACTTTGCCACCATTGAAGCCAAGATTGCTCTTTCAATGATCCTACAGCGCTACTTCTTTACGCTGTCTCCGGGTTATGTTCACTCGCCCTTGAAGCATCTGGCACTGCACCCACAACATGGAGTTCAAATAATGCTACACTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

58

Amino Acids

6.53

Weight (kDa)

9.63

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 45	1.8e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29180
malus_domestica	MD13G1057300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339421 RchiOBHm_Chr2g0110971 RchiOBHm_Chr4g0437461
rosa_multiflora	Rmu_sc0002472.1_g000007 Rmu_sc0002638.1_g000038 Rmu_sc0036394.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AclWI	GGATC	1 cut(s)	61
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	44, 63, 121, 155
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	61
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 121
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 170
CfoI	GCGC	1 cut(s)	78
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	77
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	9, 105, 147
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	145
GlaI	GCGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	79
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 121
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	111, 113
LweI	GCATC	1 cut(s)	133
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	13
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	53, 121
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	71
SgeI	CNNG	7 cut(s)	61, 110, 111, 124, 130, 140, 158
Sse9I	AATT	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	174
TasI	AATT	1 cut(s)	13
TscAI	CASTG	2 cut(s)	138, 177
TspRI	CASTG	2 cut(s)	138, 177
Van91I	CCANNNNNTGG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.