Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Forward (+)

8856546 .. 8858455

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1120500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATTCTGCAGCAAACATTACAGTGTTTACATCTGGGGACTTGAGAGCATGCACCAATGACTTTCACCAGAACAACTTGATTGGATTTACCCAGTTCGGTAAATTATATCGAGGATGGATTAGGCAAGGATTTACTGGAACAGATCAAGTTCGAGATGTTACAGTAAAAGTATGGGATGAAAAATCAGCTGGCTGCAGTAAACTCATGCATGATGAGTTTCTGGTGGTTAAGGAAGAAGTCGAATTTTTGACACATCCCACTTTAAATGATTATCCAAACTTGGTGAAATTGATTGGTTACTGCTGTGAAAAGGAAGTGAAAGGTGTTGTTTATGACCTCAATCCATGGGACACACTGCAAAATTTGACTGTCAAAGATTATCTCAACTGGGTTCAGAGGGTGAATGTGCTTGTGCAATTAGCAGGCCTGCTTGAATTTCTACACAACAAGGAGAAGCCATATTTGGTGCTAAATATGAATGCATCTCATATAATTCTGGATCGGGATTGCAAGCCAAAATTATTTGATTTTGGACTCATCAGTGGAGGAATCATTGGTGACATGACTACACCAAAAAAGCAGATACCAACGTCCATCGGCTTTGTTGACCCATTTTTCGCTGCAAAAGGGGGTAGGTATTGGCATACAAGCTGTGATGTGTACTCATTTGGCGTGATTCTCTTGGGCCTAATAGCCAAGAGAGGGTTTGAGCTAGAGAGTGTGGAAGAACCCCAGTTGGGCCTGGACAATTTAGTCCAGTACTGGGCCAAGAAGGAATATAAGCCCAATTGCTCACTTGTCCACAGAGGCTTACAGGAAGACTGGAGTTATGTTGTTGAAGATGGTACGGCAATTACAGAGCTGGGGATGCGTTGTGTTGAATTTTTCCCGACAAACCGTCCGACAATGAAGAACGTTGTTGAAAGTCTTGAAGGTTTAATGCTTTTGCAACGGTTTGGTGATGCTAGACCTAACAAAAGGGAGAAGACATTTCATGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

336

Amino Acids

38.19

Weight (kDa)

5.94

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 311	7e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	48 - 309	2.9e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	755
AclI	AACGTT	1 cut(s)	918
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	4 cut(s)	245, 364, 437, 884
AfaI	GTAC	3 cut(s)	665, 764, 850
AfiI	CCNNNNNNNGG	3 cut(s)	705, 740, 766
AgsI	TTSAA	5 cut(s)	437, 842, 884, 926, 935
AhdI	GACNNNNNGTC	1 cut(s)	900
AjnI	CCWGG	1 cut(s)	744
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	4 cut(s)	191, 654, 715, 865
AluI	AGCT	4 cut(s)	191, 654, 715, 865
AlwI	GGATC	1 cut(s)	510
AoxI	GGCC	4 cut(s)	427, 688, 742, 768
ApeKI	GCWGC	3 cut(s)	11, 195, 623
ApoI	RAATTY	4 cut(s)	245, 364, 437, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	602, 634
AspS9I	GGNCC	3 cut(s)	688, 742, 768
AsuHPI	GGTGA	5 cut(s)	59, 298, 415, 572, 974
BaeI	ACNNNNGTAYC	2 cut(s)	578, 611
BbsI	GAAGAC	2 cut(s)	828, 995
BbvI	GCAGC	3 cut(s)	23, 182, 610
BccI	CCATC	3 cut(s)	111, 605, 839
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	1 cut(s)	746
BfaI	CTAG	2 cut(s)	716, 969
BfmI	CTRYAG	2 cut(s)	9, 196
BisI	GCNGC	3 cut(s)	12, 196, 624
BlsI	GCNGC	3 cut(s)	13, 197, 625
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	900
BmgT120I	GGNCC	3 cut(s)	688, 742, 768
BmrFI	CCNGG	1 cut(s)	746
BmrI	ACTGGG	4 cut(s)	88, 400, 730, 775
BmsI	GCATC	3 cut(s)	494, 861, 955
BmuI	ACTGGG	4 cut(s)	88, 400, 730, 775
BpiI	GAAGAC	2 cut(s)	828, 995
BpmI	CTGGAG	1 cut(s)	847
BpuEI	CTTGAG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	3 cut(s)	705, 740, 766
Bse1I	ACTGG	7 cut(s)	94, 142, 395, 736, 760, 770, 830
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	4 cut(s)	122, 184, 256, 876
BseLI	CCNNNNNNNGG	3 cut(s)	705, 740, 766
BseNI	ACTGG	7 cut(s)	94, 142, 395, 736, 760, 770, 830
BseXI	GCAGC	3 cut(s)	23, 182, 610
BseYI	CCCAGC	1 cut(s)	865
BshFI	GGCC	4 cut(s)	429, 690, 744, 770
BslFI	GGGAC	2 cut(s)	53, 365
BslI	CCNNNNNNNGG	3 cut(s)	705, 740, 766
BsmFI	GGGAC	2 cut(s)	53, 365
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	4 cut(s)	429, 690, 744, 770
Bsp143I	GATC	2 cut(s)	145, 502
Bsp19I	CCATGG	1 cut(s)	347
BspANI	GGCC	4 cut(s)	429, 690, 744, 770
BspMAI	CTGCAG	2 cut(s)	13, 200
BspPI	GGATC	1 cut(s)	510
BsrI	ACTGG	7 cut(s)	94, 142, 395, 736, 760, 770, 830
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	145, 502
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	5 cut(s)	25, 166, 373, 902, 957
BstC8I	GCNNGC	5 cut(s)	52, 193, 427, 431, 515
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	4 cut(s)	122, 184, 256, 876
BstKTI	GATC	2 cut(s)	148, 505
BstMBI	GATC	2 cut(s)	145, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	2 cut(s)	54, 1006
BstSCI	CCNGG	1 cut(s)	744
BstSFI	CTRYAG	2 cut(s)	9, 196
BstV1I	GCAGC	3 cut(s)	23, 182, 610
BstV2I	GAAGAC	2 cut(s)	828, 995
BsuRI	GGCC	4 cut(s)	429, 690, 744, 770
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	4 cut(s)	122, 184, 256, 876
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	3 cut(s)	30, 356, 550
Cac8I	GCNNGC	5 cut(s)	52, 193, 427, 431, 515
Cfr13I	GGNCC	3 cut(s)	688, 742, 768
Csp6I	GTAC	3 cut(s)	664, 763, 849
CviAII	CATG	7 cut(s)	51, 208, 212, 348, 565, 998, 1003
CviQI	GTAC	3 cut(s)	664, 763, 849
DpnI	GATC	2 cut(s)	147, 504
DpnII	GATC	2 cut(s)	145, 502
DraI	TTTAAA	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	755
DriI	GACNNNNNGTC	1 cut(s)	900
DseDI	GACNNNNNNGTC	1 cut(s)	755
Eam1105I	GACNNNNNGTC	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	2 cut(s)	213, 487
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	7 cut(s)	54, 211, 215, 351, 568, 1001, 1006
FaqI	GGGAC	2 cut(s)	53, 365
FatI	CATG	7 cut(s)	50, 207, 211, 347, 564, 997, 1002
Fnu4HI	GCNGC	3 cut(s)	12, 196, 624
FokI	GGATG	4 cut(s)	129, 191, 243, 883
Fsp4HI	GCNGC	3 cut(s)	12, 196, 624
FspBI	CTAG	2 cut(s)	716, 969
GluI	GCNGC	3 cut(s)	12, 196, 624
GsaI	CCCAGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	847
HaeIII	GGCC	4 cut(s)	429, 690, 744, 770
Hin1II	CATG	7 cut(s)	54, 211, 215, 351, 568, 1001, 1006
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	5, 537, 552, 679
HphI	GGTGA	5 cut(s)	59, 298, 415, 572, 974
Hpy166II	GTNNAC	5 cut(s)	30, 203, 610, 664, 805
Hpy188I	TCNGA	2 cut(s)	399, 906
Hpy188III	TCNNGA	5 cut(s)	155, 500, 506, 892, 932
Hpy8I	GTNNAC	5 cut(s)	30, 203, 610, 664, 805
HpyAV	CCTTC	2 cut(s)	769, 929
HpyCH4III	ACNGT	5 cut(s)	25, 166, 373, 902, 957
HpyCH4IV	ACGT	2 cut(s)	593, 918
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpySE526I	ACGT	2 cut(s)	593, 918
Hsp92II	CATG	7 cut(s)	54, 211, 215, 351, 568, 1001, 1006
Kzo9I	GATC	2 cut(s)	145, 502
Lsp1109I	GCAGC	3 cut(s)	23, 182, 610
LweI	GCATC	3 cut(s)	494, 861, 955
MaeI	CTAG	2 cut(s)	716, 969
MaeII	ACGT	2 cut(s)	593, 918
MaeIII	GTNAC	3 cut(s)	160, 299, 560
MalI	GATC	2 cut(s)	147, 504
MboI	GATC	2 cut(s)	145, 502
MboII	GAAGA	6 cut(s)	248, 740, 833, 854, 925, 1000
MfeI	CAATTG	1 cut(s)	790
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	929
MnlI	CCTC	6 cut(s)	107, 350, 393, 542, 698, 803
Mph1103I	ATGCAT	2 cut(s)	213, 487
MseI	TTAA	3 cut(s)	231, 266, 941
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	790
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	1 cut(s)	871
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	2 cut(s)	145, 502
NlaIII	CATG	7 cut(s)	54, 211, 215, 351, 568, 1001, 1006
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	2 cut(s)	213, 487
NspI	RCATGY	2 cut(s)	54, 1006
PaeI	GCATGC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	5, 552, 679
PkrI	GCNGC	3 cut(s)	13, 197, 625
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Psp1406I	AACGTT	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	1 cut(s)	744
PspPI	GGNCC	3 cut(s)	688, 742, 768
PstI	CTGCAG	2 cut(s)	13, 200
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	665, 764, 850
RsaNI	GTAC	3 cut(s)	664, 763, 849
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	231, 266, 941
SatI	GCNGC	3 cut(s)	12, 196, 624
Sau3AI	GATC	2 cut(s)	145, 502
Sau96I	GGNCC	3 cut(s)	688, 742, 768
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	746
SfaNI	GCATC	3 cut(s)	494, 861, 955
SfcI	CTRYAG	2 cut(s)	9, 196
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SphI	GCATGC	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	429
SspMI	CTAG	2 cut(s)	716, 969
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	744
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	5 cut(s)	25, 166, 373, 902, 957
TaiI	ACGT	2 cut(s)	596, 921
TaqI	TCGA	3 cut(s)	112, 154, 243
TatI	WGTACW	2 cut(s)	663, 762
TfiI	GAWTC	3 cut(s)	5, 552, 679
Tru1I	TTAA	3 cut(s)	231, 266, 941
Tru9I	TTAA	3 cut(s)	231, 266, 941
TscAI	CASTG	3 cut(s)	30, 363, 550
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	3 cut(s)	11, 195, 623
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	4 cut(s)	195, 494, 926, 986
TspRI	CASTG	3 cut(s)	30, 363, 550
XapI	RAATTY	4 cut(s)	245, 364, 437, 884
XceI	RCATGY	2 cut(s)	54, 1006
XspI	CTAG	2 cut(s)	716, 969
ZrmI	AGTACT	1 cut(s)	764
Zsp2I	ATGCAT	2 cut(s)	213, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.