Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Reverse (-)

51867576 .. 51870353

Gene Structure 2778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGTTTGCAAATCTTATAGTGTTTACATCTGAGGACTTGAAACTTTGCACCAACAATTTCCACAAGAACAATCTGATTGGATTGACCCAGTTTGGCAAATTATACAGAGGTCAGATTAAGCAACAAGGGTTTCACATTGGATCACAAGCTGGAGACGTTACTGTCAAAATATGGGATGAGAGATCAAGCTGCATAACATTCACAAATGATGAGTTTCTCATGGAAGAAGTTCAATTCTTAACACAGCCAAGTATAAAGGGTTATCCAAACTTGGTGAAGTTGATTGGATATTGCTGTGAAAAAGAAGTGAAGGGTGTTGTCTATGACCTTAATCCATGGGATACCCTTCACAATTTGACCCCAAAAGATAACCTCAACTGGGTTCAAAGGATCAATGTGCTTCTTCAATTTGCCCAACTACTTGAATTTCTACACAACAAGGAAAAGCCATATCTGGTGTTGAACACTAATGCATCTCATATAATGCTGGATTGGGAGTGCAAGCCAACACTAGTTGATTTTGGATTAATTAGTGGAGGAATCATTGGTGAAATGACACCACTAAAAAAGAAGATGCCAATGTCCACCATTGGGTTTGTTGATCCATTTTTTGCTGCAAAAGGTGGTAGTTATTGGGATACCAGCTGTGATGTATTTTCATTTGGTGTGATTCTTCTGGGACTAATAGCCAAGAGAGATTCTGAGCTAGAAAATGTGGGGAAGCCTCAGTTGGGCCTGGACAGTCTGGTGCAAAACTGGGCCAAGAATGTATACAGGCCCAATTGCTCACTTGTACACAGAAGCTTGCAGGAAGATTGGGGTTGTTTTGCTGAAGATGGTAGTGTAATTACAGAGCTGGGAATGAGGTGTGTTGAGTTCTTTCCGGTAAACCGTCCAACGATGAAGAAGGTCGTAGAGTGTCTTCAAGGTTTGCTGGCTTTTCAACGCCTTGAAGATGCTAGACCTAGCAAAAGGGAAAAGACATTTCATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.86

Weight (kDa)

6.19

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	23 - 308	7.9e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	54 - 306	9e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	774
AclWI	GGATC	3 cut(s)	151, 401, 599
AcsI	RAATTY	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	855
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	3 cut(s)	382, 594, 734
AgsI	TTSAA	9 cut(s)	43, 236, 389, 410, 428, 466, 929, 947, 956
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	738
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AluBI	AGCT	6 cut(s)	152, 192, 648, 709, 807, 859
AluI	AGCT	6 cut(s)	152, 192, 648, 709, 807, 859
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	3 cut(s)	151, 401, 599
AoxI	GGCC	3 cut(s)	736, 762, 779
ApeKI	GCWGC	2 cut(s)	192, 617
ApoI	RAATTY	1 cut(s)	428
AseI	ATTAAT	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	736, 762, 780
AsuHPI	GGTGA	2 cut(s)	289, 563
BarI	GAAGNNNNNNTAC	2 cut(s)	909, 941
BbsI	GAAGAC	1 cut(s)	917
BbvI	GCAGC	2 cut(s)	179, 604
BccI	CCATC	1 cut(s)	833
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	2 cut(s)	337, 634
BcoDI	GTCTC	1 cut(s)	150
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	4 cut(s)	515, 710, 963, 969
BfuI	GTATCC	2 cut(s)	337, 634
BisI	GCNGC	2 cut(s)	193, 618
BlsI	GCNGC	2 cut(s)	194, 619
Bme1390I	CCNGG	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	736, 762, 780
BmrFI	CCNGG	1 cut(s)	740
BmrI	ACTGGG	3 cut(s)	85, 391, 769
BmsI	GCATC	3 cut(s)	485, 567, 949
BmuI	ACTGGG	3 cut(s)	85, 391, 769
BpiI	GAAGAC	1 cut(s)	917
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 594, 734
Bse1I	ACTGG	3 cut(s)	91, 386, 764
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	3 cut(s)	382, 594, 734
BseMII	CTCAG	3 cut(s)	24, 696, 743
BseNI	ACTGG	3 cut(s)	91, 386, 764
BseXI	GCAGC	2 cut(s)	179, 604
BseYI	CCCAGC	1 cut(s)	859
BshFI	GGCC	3 cut(s)	738, 764, 781
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	3 cut(s)	382, 594, 734
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	696
BsnI	GGCC	3 cut(s)	738, 764, 781
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	143, 185, 393, 604
Bsp19I	CCATGG	1 cut(s)	338
BspANI	GGCC	3 cut(s)	738, 764, 781
BspCNI	CTCAG	3 cut(s)	25, 697, 742
BspPI	GGATC	3 cut(s)	151, 401, 599
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	3 cut(s)	91, 386, 764
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	4 cut(s)	143, 185, 393, 604
BssNAI	GTATAC	1 cut(s)	775
BssT1I	CCWWGG	1 cut(s)	338
Bst1107I	GTATAC	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	3 cut(s)	166, 746, 896
BstAUI	TGTACA	1 cut(s)	796
BstC8I	GCNNGC	3 cut(s)	506, 809, 939
BstDEI	CTNAG	3 cut(s)	33, 705, 729
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	4 cut(s)	146, 188, 396, 607
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	143, 185, 393, 604
BstNI	CCWGG	1 cut(s)	740
BstSCI	CCNGG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	179, 604
BstV2I	GAAGAC	1 cut(s)	917
BstZ17I	GTATAC	1 cut(s)	775
BsuI	GTATCC	2 cut(s)	337, 634
BsuRI	GGCC	3 cut(s)	738, 764, 781
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	506, 809, 939
Cfr13I	GGNCC	3 cut(s)	736, 762, 780
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	3 cut(s)	223, 339, 992
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	3 cut(s)	33, 705, 729
DpnI	GATC	4 cut(s)	145, 187, 395, 606
DpnII	GATC	4 cut(s)	143, 185, 393, 604
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	855
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	338
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	226, 342, 995
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	3 cut(s)	222, 338, 991
FblI	GTMKAC	1 cut(s)	774
Fnu4HI	GCNGC	2 cut(s)	193, 618
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	193, 618
FspBI	CTAG	4 cut(s)	515, 710, 963, 969
GluI	GCNGC	2 cut(s)	193, 618
GsaI	CCCAGC	1 cut(s)	863
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	738, 764, 781
HapII	CCGG	1 cut(s)	887
Hin1II	CATG	3 cut(s)	226, 342, 995
HindIII	AAGCTT	1 cut(s)	805
HinfI	GANTC	3 cut(s)	543, 673, 701
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	2 cut(s)	289, 563
Hpy166II	GTNNAC	5 cut(s)	27, 588, 775, 799, 892
Hpy188I	TCNGA	4 cut(s)	34, 78, 117, 706
Hpy8I	GTNNAC	5 cut(s)	27, 588, 775, 799, 892
HpyAV	CCTTC	3 cut(s)	307, 359, 904
HpyCH4III	ACNGT	3 cut(s)	166, 746, 896
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	8 cut(s)	11, 51, 195, 476, 504, 620, 754, 811
HpyF3I	CTNAG	3 cut(s)	33, 705, 729
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	226, 342, 995
Kzo9I	GATC	4 cut(s)	143, 185, 393, 604
Lsp1109I	GCAGC	2 cut(s)	179, 604
LweI	GCATC	3 cut(s)	485, 567, 949
MaeI	CTAG	4 cut(s)	515, 710, 963, 969
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	4 cut(s)	145, 187, 395, 606
MboI	GATC	4 cut(s)	143, 185, 393, 604
MboII	GAAGA	9 cut(s)	239, 398, 586, 668, 827, 848, 917, 919, 968
MfeI	CAATTG	1 cut(s)	784
MluCI	AATT	9 cut(s)	58, 101, 236, 355, 410, 428, 531, 784, 849
MmeI	TCCRAC	1 cut(s)	923
MnlI	CCTC	6 cut(s)	28, 104, 386, 533, 738, 861
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	120, 242, 333, 530
MspA1I	CMGCKG	1 cut(s)	648
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	1 cut(s)	740
MunI	CAATTG	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	740
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	4 cut(s)	143, 185, 393, 604
NlaIII	CATG	3 cut(s)	226, 342, 995
NsiI	ATGCAT	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	543, 673, 701
PkrI	GCNGC	2 cut(s)	194, 619
PshBI	ATTAAT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	738
PspPI	GGNCC	3 cut(s)	736, 762, 780
PvuII	CAGCTG	1 cut(s)	648
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	120, 242, 333, 530
SatI	GCNGC	2 cut(s)	193, 618
Sau3AI	GATC	4 cut(s)	143, 185, 393, 604
Sau96I	GGNCC	3 cut(s)	736, 762, 780
ScrFI	CCNGG	1 cut(s)	740
SfaNI	GCATC	3 cut(s)	485, 567, 949
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	9 cut(s)	58, 101, 236, 355, 410, 428, 531, 784, 849
SspMI	CTAG	4 cut(s)	515, 710, 963, 969
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	166, 746, 896
TaiI	ACGT	1 cut(s)	162
TasI	AATT	9 cut(s)	58, 101, 236, 355, 410, 428, 531, 784, 849
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	3 cut(s)	543, 673, 701
Tru1I	TTAA	4 cut(s)	120, 242, 333, 530
Tru9I	TTAA	4 cut(s)	120, 242, 333, 530
TseI	GCWGC	2 cut(s)	192, 617
TspDTI	ATGAA	3 cut(s)	651, 920, 980
VspI	ATTAAT	1 cut(s)	530
XapI	RAATTY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	515, 710, 963, 969
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.