Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Reverse (-)

58144099 .. 58146848

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGTTGTGAAGCAAATCTTATGGTGTTTACATCTGAGGACTTGAAACTTTGCACCAACAATTTCCACAAGAACAATCTGATTGGATTGACCCAGTTTGGCAAATTATACAGAGGTCAGATTAAGCAACAAGGGTTTAACATTGGATCACAAGCTGGAGATGTTACTGTCAAAATATGGGATGAGAGATCAAGCTGCATAACATTCACAAATGATGAGTTTCTCATGGTCAAGGAAGAAGTTCAATTCTTAACACAGCCAAGTATAAAGGGTTATCCAAACTTGGTGAAGTTGATTGGATATTGCTGTGAAAAAGAAGTGAAGGGTGTTGTCTATGACCTTAATCCATGGGATACCCTTCACAATTTGACCCCAAAAGGTACATCAAGTTTTCACTTAACCTTCAGTTTTCTATATAAATTGCTTCATACAAGATACAACTCATTGTATAGAATCTATACAGATAACCTCAACTGGGTTCAAAGGATCAATGTGCTTCTTCAATTTGCCCAACTACTTGAATTTCTACACAACAAGGAAAAGCCATATCTGATGTTGAACACTAATGCATCACATATAATGCTGGATTGGGAGTGCAAGCCAACACTAGTTGATTTTGGATTAATTAGTGGAGGAATCATTGGTGAAATGACACCACTAAAAAAGAAGATGCCAATGTCCACCATTGGGTTTGTTGATCCATTTTTTGCTGCAAAAGGTGGAAGTTATTGGGATACCAGCTGTGATGTATTTTCATTTGGTGTGATTCTTCTGGGACTAATAGCCAAGAGAAATTCTGAGCTAGAAAATGTGGGGAAGCCTCAGTTGGGCCTGGACAGTCTGGTGCAAAACTGGGCCAAGAATGTATACAGGCCCAATTGCTCACTTGTACACAGAAGCTTGCAGGAAGATTGGGGTTGTTTTGCTGAAGATGGTAGTGCAATTACAGAGCTGGGAATGAGGTGTGTTGAGTTCTTTCCGGTAAACCGTCCGACGATGAAGAAGGTCGTAGAGTGTCTTCAAGGTTTGCTGGCTTTTCAACGCCTTGAAGATGCTAGACCTAGCAAAAGGGAAAAGACATTTCATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

364

Amino Acids

41.51

Weight (kDa)

7.94

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 339	4.3e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	867
AclWI	GGATC	3 cut(s)	154, 494, 692
AcsI	RAATTY	2 cut(s)	521, 793
AcuI	CTGAAG	2 cut(s)	388, 948
AfaI	GTAC	2 cut(s)	382, 891
AfiI	CCNNNNNNNGG	3 cut(s)	475, 687, 827
AgsI	TTSAA	9 cut(s)	46, 245, 482, 503, 521, 559, 1022, 1040, 1049
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	831
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	6 cut(s)	155, 195, 741, 802, 900, 952
AluI	AGCT	6 cut(s)	155, 195, 741, 802, 900, 952
AlwI	GGATC	3 cut(s)	154, 494, 692
AoxI	GGCC	3 cut(s)	829, 855, 872
ApeKI	GCWGC	2 cut(s)	195, 710
ApoI	RAATTY	2 cut(s)	521, 793
AseI	ATTAAT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	829, 855, 873
AsuHPI	GGTGA	2 cut(s)	298, 656
BarI	GAAGNNNNNNTAC	2 cut(s)	1002, 1034
BbsI	GAAGAC	1 cut(s)	1010
BbvI	GCAGC	2 cut(s)	182, 697
BccI	CCATC	1 cut(s)	926
BciT130I	CCWGG	1 cut(s)	833
BciVI	GTATCC	2 cut(s)	346, 727
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	4 cut(s)	608, 803, 1056, 1062
BfuI	GTATCC	2 cut(s)	346, 727
BisI	GCNGC	2 cut(s)	196, 711
BlsI	GCNGC	2 cut(s)	197, 712
Bme1390I	CCNGG	1 cut(s)	833
BmgT120I	GGNCC	3 cut(s)	829, 855, 873
BmrFI	CCNGG	1 cut(s)	833
BmrI	ACTGGG	3 cut(s)	88, 484, 862
BmsI	GCATC	3 cut(s)	578, 660, 1042
BmuI	ACTGGG	3 cut(s)	88, 484, 862
BpiI	GAAGAC	1 cut(s)	1010
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 687, 827
Bse1I	ACTGG	3 cut(s)	94, 479, 857
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	3 cut(s)	475, 687, 827
BseMII	CTCAG	3 cut(s)	27, 789, 836
BseNI	ACTGG	3 cut(s)	94, 479, 857
BseXI	GCAGC	2 cut(s)	182, 697
BseYI	CCCAGC	1 cut(s)	952
BshFI	GGCC	3 cut(s)	831, 857, 874
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	3 cut(s)	475, 687, 827
BsmFI	GGGAC	1 cut(s)	789
BsnI	GGCC	3 cut(s)	831, 857, 874
Bsp1407I	TGTACA	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	146, 188, 486, 697
Bsp19I	CCATGG	1 cut(s)	347
BspANI	GGCC	3 cut(s)	831, 857, 874
BspCNI	CTCAG	3 cut(s)	28, 790, 835
BspPI	GGATC	3 cut(s)	154, 494, 692
BsrGI	TGTACA	1 cut(s)	889
BsrI	ACTGG	3 cut(s)	94, 479, 857
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	146, 188, 486, 697
BssNAI	GTATAC	1 cut(s)	868
BssT1I	CCWWGG	1 cut(s)	347
Bst1107I	GTATAC	1 cut(s)	868
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	3 cut(s)	169, 839, 989
BstAUI	TGTACA	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	599, 902, 1032
BstDEI	CTNAG	3 cut(s)	36, 798, 822
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	149, 191, 489, 700
BstMBI	GATC	4 cut(s)	146, 188, 486, 697
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	182, 697
BstV2I	GAAGAC	1 cut(s)	1010
BstZ17I	GTATAC	1 cut(s)	868
BsuI	GTATCC	2 cut(s)	346, 727
BsuRI	GGCC	3 cut(s)	831, 857, 874
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	599, 902, 1032
Cfr13I	GGNCC	3 cut(s)	829, 855, 873
Csp6I	GTAC	2 cut(s)	381, 890
CviAII	CATG	3 cut(s)	226, 348, 1085
CviQI	GTAC	2 cut(s)	381, 890
DdeI	CTNAG	3 cut(s)	36, 798, 822
DpnI	GATC	4 cut(s)	148, 190, 488, 699
DpnII	GATC	4 cut(s)	146, 188, 486, 697
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	388, 948
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	229, 351, 1088
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	3 cut(s)	225, 347, 1084
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	196, 711
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	196, 711
FspBI	CTAG	4 cut(s)	608, 803, 1056, 1062
GluI	GCNGC	2 cut(s)	196, 711
GsaI	CCCAGC	1 cut(s)	956
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	831, 857, 874
HapII	CCGG	1 cut(s)	980
Hin1II	CATG	3 cut(s)	229, 351, 1088
HindIII	AAGCTT	1 cut(s)	898
HinfI	GANTC	3 cut(s)	453, 636, 766
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	2 cut(s)	298, 656
Hpy166II	GTNNAC	5 cut(s)	30, 681, 868, 892, 985
Hpy188I	TCNGA	6 cut(s)	37, 81, 120, 552, 799, 993
Hpy8I	GTNNAC	5 cut(s)	30, 681, 868, 892, 985
Hpy99I	CGWCG	1 cut(s)	997
HpyAV	CCTTC	4 cut(s)	316, 368, 412, 997
HpyCH4III	ACNGT	3 cut(s)	169, 839, 989
HpyCH4V	TGCA	8 cut(s)	54, 198, 569, 597, 713, 847, 904, 941
HpyF3I	CTNAG	3 cut(s)	36, 798, 822
Hsp92II	CATG	3 cut(s)	229, 351, 1088
Kzo9I	GATC	4 cut(s)	146, 188, 486, 697
Lsp1109I	GCAGC	2 cut(s)	182, 697
LweI	GCATC	3 cut(s)	578, 660, 1042
MaeI	CTAG	4 cut(s)	608, 803, 1056, 1062
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	148, 190, 488, 699
MboI	GATC	4 cut(s)	146, 188, 486, 697
MboII	GAAGA	9 cut(s)	248, 491, 679, 761, 920, 941, 1010, 1012, 1061
MfeI	CAATTG	1 cut(s)	877
MmeI	TCCRAC	1 cut(s)	1016
MnlI	CCTC	6 cut(s)	31, 107, 479, 626, 831, 954
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	6 cut(s)	123, 138, 251, 342, 398, 623
MspA1I	CMGCKG	1 cut(s)	741
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	1 cut(s)	833
MunI	CAATTG	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	833
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	4 cut(s)	146, 188, 486, 697
NlaIII	CATG	3 cut(s)	229, 351, 1088
NsiI	ATGCAT	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	453, 636, 766
PkrI	GCNGC	2 cut(s)	197, 712
PshBI	ATTAAT	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	831
PspFI	CCCAGC	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	831
PspPI	GGNCC	3 cut(s)	829, 855, 873
PvuII	CAGCTG	1 cut(s)	741
RsaI	GTAC	2 cut(s)	382, 891
RsaNI	GTAC	2 cut(s)	381, 890
SaqAI	TTAA	6 cut(s)	123, 138, 251, 342, 398, 623
SatI	GCNGC	2 cut(s)	196, 711
Sau3AI	GATC	4 cut(s)	146, 188, 486, 697
Sau96I	GGNCC	3 cut(s)	829, 855, 873
ScrFI	CCNGG	1 cut(s)	833
SfaNI	GCATC	3 cut(s)	578, 660, 1042
SpeI	ACTAGT	1 cut(s)	607
SspMI	CTAG	4 cut(s)	608, 803, 1056, 1062
StyD4I	CCNGG	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	169, 839, 989
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	3 cut(s)	453, 636, 766
Tru1I	TTAA	6 cut(s)	123, 138, 251, 342, 398, 623
Tru9I	TTAA	6 cut(s)	123, 138, 251, 342, 398, 623
TseI	GCWGC	2 cut(s)	195, 710
TspDTI	ATGAA	4 cut(s)	416, 744, 1013, 1073
VspI	ATTAAT	1 cut(s)	623
XapI	RAATTY	2 cut(s)	521, 793
XmiI	GTMKAC	1 cut(s)	867
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	608, 803, 1056, 1062
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.