Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Forward (+)

12640814 .. 12642144

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTTGTGAAGCAAATCTTATAGTGTTTACATCTGAGGACTTGAAACTTTGCACCAACAATTTCCATAAGAACAATCTGATTGGATTGACCCAGTTTGGCAAATTATACAGAGGTCAGATTAAGCAACAAGGGTTTAACATTGGATCACAAGCTGGAGATGTTACTGTCAAAATATGGGATGAGAGATCAAGCTGCATAACATTCACAAATGATGAGTTTCTCATGGTCAAGGAAGAAGTTCAATTCTTAACACAGCCAAGTATAAAGGGTTATCCAAACTTGGCGAAGTTGATTGGATATTGCTGTGAAAAAGAAGTGAAGGGTGTTGTCTATGACCTTAATCCATGGGATACCCTTCATAATTTGACCCCAACGGATAACCTCACCTGGGTTCAAAGGATCAATGTGCTTCTTCAATTTGCCCAACTACTTGAATTTCTACACAACAAGGAAAAGCCATATCTGGTGTTAAATACTAACGCATCTCATATTATACTGGATTGGGAGTGCAAGCCAACACTAGTTGATTTTGGATTAATTAGTGGAGGAATCATTGGTGAAATGACACCACTAAAAAAGAAGATGCCAATGTCCACCATTGGGCTTGTTGATCCATTTTTTGCTGCAAAAGGTGGTAGTTATTGGGATACCAGCTGTGATGTATTTTCATTTGGTGTGATTCTGCTGGGACTAATAGCCAAGAGAAATTCTGAGCTAGAAAATCTGGGAAAGCCTCAGTTGGGCCTGGACAGTCTGGTGCACAACTGGGCCAAGAATGTATACAGGCCCAATTGCTCACTTGTACACAGAAGCTTGCAGGAAGATTGGGGTTGTTTTGCTGAAGATGGCAGTGCAATTACAGAGCTGGGAATGAGGTGTGTTGAGTTCTTTCCGGTAAACCGTCCGACTATGAAGAAGGTCGTAGGGTGTCTTCAAGGTTTGCTGGCTTTGCAACGCCTTGAAGATGCTAGACCTAGCAAAAGGGAAAAGGCATTTCATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

6.66

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 309	1.6e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AclWI	GGATC	3 cut(s)	154, 410, 608
AcsI	RAATTY	2 cut(s)	437, 709
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	3 cut(s)	391, 603, 743
AgsI	TTSAA	7 cut(s)	46, 245, 398, 419, 437, 938, 965
AhlI	ACTAGT	1 cut(s)	523
AjnI	CCWGG	2 cut(s)	389, 747
AluBI	AGCT	6 cut(s)	155, 195, 657, 718, 816, 868
AluI	AGCT	6 cut(s)	155, 195, 657, 718, 816, 868
Alw21I	GWGCWC	1 cut(s)	765
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	3 cut(s)	154, 410, 608
AoxI	GGCC	3 cut(s)	745, 771, 788
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	2 cut(s)	195, 626
ApoI	RAATTY	2 cut(s)	437, 709
AseI	ATTAAT	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	745, 771, 789
AsuHPI	GGTGA	2 cut(s)	379, 572
BaeGI	GKGCMC	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	182, 613
BccI	CCATC	1 cut(s)	842
BciT130I	CCWGG	2 cut(s)	391, 749
BciVI	GTATCC	2 cut(s)	346, 643
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	4 cut(s)	524, 719, 972, 978
BfuI	GTATCC	2 cut(s)	346, 643
BisI	GCNGC	2 cut(s)	196, 627
BlsI	GCNGC	2 cut(s)	197, 628
Bme1390I	CCNGG	2 cut(s)	391, 749
BmgT120I	GGNCC	3 cut(s)	745, 771, 789
BmrFI	CCNGG	2 cut(s)	391, 749
BmrI	ACTGGG	2 cut(s)	88, 778
BmsI	GCATC	3 cut(s)	494, 576, 958
BmuI	ACTGGG	2 cut(s)	88, 778
BpiI	GAAGAC	1 cut(s)	926
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	347, 390
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 603, 743
Bse1I	ACTGG	3 cut(s)	94, 504, 773
BseBI	CCWGG	2 cut(s)	391, 749
BseDI	CCNNGG	2 cut(s)	347, 390
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	3 cut(s)	391, 603, 743
BseMII	CTCAG	3 cut(s)	27, 705, 752
BseNI	ACTGG	3 cut(s)	94, 504, 773
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	182, 613
BseYI	CCCAGC	2 cut(s)	688, 868
BshFI	GGCC	3 cut(s)	747, 773, 790
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	3 cut(s)	391, 603, 743
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	747, 773, 790
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	4 cut(s)	146, 188, 402, 613
Bsp19I	CCATGG	1 cut(s)	347
BspANI	GGCC	3 cut(s)	747, 773, 790
BspCNI	CTCAG	3 cut(s)	28, 706, 751
BspPI	GGATC	3 cut(s)	154, 410, 608
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	3 cut(s)	94, 504, 773
BssECI	CCNNGG	2 cut(s)	347, 390
BssMI	GATC	4 cut(s)	146, 188, 402, 613
BssNAI	GTATAC	1 cut(s)	784
BssT1I	CCWWGG	1 cut(s)	347
Bst1107I	GTATAC	1 cut(s)	784
Bst2UI	CCWGG	2 cut(s)	391, 749
Bst4CI	ACNGT	3 cut(s)	169, 755, 905
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	515, 818, 948
BstDEI	CTNAG	3 cut(s)	36, 714, 738
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	149, 191, 405, 616
BstMBI	GATC	4 cut(s)	146, 188, 402, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	952
BstNI	CCWGG	2 cut(s)	391, 749
BstSCI	CCNGG	2 cut(s)	389, 747
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	182, 613
BstV2I	GAAGAC	1 cut(s)	926
BstZ17I	GTATAC	1 cut(s)	784
BsuI	GTATCC	2 cut(s)	346, 643
BsuRI	GGCC	3 cut(s)	747, 773, 790
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	3 cut(s)	515, 818, 948
Cfr13I	GGNCC	3 cut(s)	745, 771, 789
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	3 cut(s)	226, 348, 1001
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	3 cut(s)	36, 714, 738
DpnI	GATC	4 cut(s)	148, 190, 404, 615
DpnII	GATC	4 cut(s)	146, 188, 402, 613
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	389, 747
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	229, 351, 1004
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	3 cut(s)	225, 347, 1000
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	2 cut(s)	196, 627
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	196, 627
FspBI	CTAG	4 cut(s)	524, 719, 972, 978
GluI	GCNGC	2 cut(s)	196, 627
GsaI	CCCAGC	2 cut(s)	692, 872
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	747, 773, 790
HapII	CCGG	1 cut(s)	896
Hin1II	CATG	3 cut(s)	229, 351, 1004
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	2 cut(s)	552, 682
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	2 cut(s)	379, 572
Hpy166II	GTNNAC	6 cut(s)	30, 597, 763, 784, 808, 901
Hpy188I	TCNGA	5 cut(s)	37, 81, 120, 715, 909
Hpy8I	GTNNAC	6 cut(s)	30, 597, 763, 784, 808, 901
HpyAV	CCTTC	3 cut(s)	316, 368, 913
HpyCH4III	ACNGT	3 cut(s)	169, 755, 905
HpyCH4V	TGCA	8 cut(s)	54, 198, 513, 629, 763, 820, 857, 955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	952
HpyF3I	CTNAG	3 cut(s)	36, 714, 738
Hsp92II	CATG	3 cut(s)	229, 351, 1004
Kzo9I	GATC	4 cut(s)	146, 188, 402, 613
Lsp1109I	GCAGC	2 cut(s)	182, 613
LweI	GCATC	3 cut(s)	494, 576, 958
MaeI	CTAG	4 cut(s)	524, 719, 972, 978
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	148, 190, 404, 615
MboI	GATC	4 cut(s)	146, 188, 402, 613
MboII	GAAGA	8 cut(s)	248, 407, 595, 836, 857, 926, 928, 977
MfeI	CAATTG	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	765
MmeI	TCCRAC	1 cut(s)	932
MnlI	CCTC	6 cut(s)	31, 107, 395, 542, 747, 870
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	6 cut(s)	123, 138, 251, 342, 473, 539
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	2 cut(s)	391, 749
MunI	CAATTG	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	391, 749
MwoI	GCNNNNNNNGC	1 cut(s)	952
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	4 cut(s)	146, 188, 402, 613
NlaIII	CATG	3 cut(s)	229, 351, 1004
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	552, 682
PkrI	GCNGC	2 cut(s)	197, 628
PshBI	ATTAAT	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	389, 747
PspFI	CCCAGC	2 cut(s)	688, 868
PspGI	CCWGG	2 cut(s)	389, 747
PspPI	GGNCC	3 cut(s)	745, 771, 789
PvuII	CAGCTG	1 cut(s)	657
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
SaqAI	TTAA	6 cut(s)	123, 138, 251, 342, 473, 539
SatI	GCNGC	2 cut(s)	196, 627
Sau3AI	GATC	4 cut(s)	146, 188, 402, 613
Sau96I	GGNCC	3 cut(s)	745, 771, 789
ScrFI	CCNGG	2 cut(s)	391, 749
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	494, 576, 958
SpeI	ACTAGT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	524, 719, 972, 978
StyD4I	CCNGG	2 cut(s)	389, 747
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	169, 755, 905
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	2 cut(s)	552, 682
Tru1I	TTAA	6 cut(s)	123, 138, 251, 342, 473, 539
Tru9I	TTAA	6 cut(s)	123, 138, 251, 342, 473, 539
TscAI	CASTG	1 cut(s)	859
TseI	GCWGC	2 cut(s)	195, 626
TspDTI	ATGAA	4 cut(s)	350, 660, 929, 989
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	859
VneI	GTGCAC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	539
XapI	RAATTY	2 cut(s)	437, 709
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	524, 719, 972, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.