Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Reverse (-)

53399837 .. 53401298

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGTTGTGAAGCAAATCTTATAGTCTTTACATCTGAGGACTTGAAACTTTACACCAACAATTTCCACAAGAACAATCTGATTGGATTGACCCAGTTTGGCAAATTATTCAGAGGTCAGATTAAGCAACAAGGGTTTAACATTGGATCACAAACTGGAGATGTTTCTGTCAAAATATGGGATGAGAGATCAAGCTGCATAACATTCACAAATGATGAGTTTCTCATGGTCAAGGAAGAAGTTCAATTCTTAACACAGCCAAGTATAAAGGGTTATCCAAACTTGGTGAAGTTGATTGGATATTGCTGTGAAAAAGAAGTGAAGGGTGTTGTCTATGACCTTAATCCATGGGATACCCTTCACAATTTGACCCCAAAAGATAATCTCAACTGGGTTCAAAGGATCAATGTGCTTCTTCAATTTGCCCAACAACTTGAATTTCTACACAGCAAGGAAAAGCCATATCTGGTGTTGAATACTAATGCATCTCATATAATGCTGGATTGGGAGTGCAAGCCAACACTAGTTGATTTTGGATTAATTAGTGGAGGAATCATTGGTGAAATGACACCACTAAAAAAGAAGATGCCAATGTCCACCATTGGGTTTGTTGATCCATTTTTTGCTGCAAAAGGTGGTAGTTATTGGGATACCAGCTGTGATGTATTTTCATTTGGTGTGATTCTGCTGGGACTAATTGCCAAGAGAAATTCTGAGCTAGAAAATGTGGGAAAGCCACAGTTGGGCCTGGACAGTCTGGTGCACAACTGGGCCAAGAATGTATACAGGCCCAATTGCTCACTTGTACACAAAAGCTTGCAGGAAGATTGGGGTTGTTTTGCTGAAGATGGTAGTGCAATTACAGAGCTGGGAATGAGGTGTGTTGAGTTCTTTCCGGTAAACCGTCCGACGATGAAGAAGGTCGTAGAGTGTCTTCAAGGTTTGCTGGCTTTTCAACGCCTTGAAGATGCTAGACCTAGCAAAAGGGAAAAGACATTTCATGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

336

Amino Acids

38.08

Weight (kDa)

6.66

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 312	3.3e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	76 - 309	5.3e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AclWI	GGATC	3 cut(s)	154, 410, 608
AcsI	RAATTY	2 cut(s)	437, 709
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	2 cut(s)	603, 743
AgsI	TTSAA	9 cut(s)	46, 245, 398, 419, 437, 475, 938, 956, 965
AhlI	ACTAGT	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	195, 657, 718, 816, 868
AluI	AGCT	5 cut(s)	195, 657, 718, 816, 868
Alw21I	GWGCWC	1 cut(s)	765
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	3 cut(s)	154, 410, 608
AoxI	GGCC	3 cut(s)	745, 771, 788
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	2 cut(s)	195, 626
ApoI	RAATTY	2 cut(s)	437, 709
AseI	ATTAAT	1 cut(s)	539
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	745, 771, 789
AsuHPI	GGTGA	2 cut(s)	298, 572
BaeGI	GKGCMC	1 cut(s)	765
BarI	GAAGNNNNNNTAC	2 cut(s)	918, 950
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	182, 613
BccI	CCATC	1 cut(s)	842
BciT130I	CCWGG	1 cut(s)	749
BciVI	GTATCC	2 cut(s)	346, 643
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	4 cut(s)	524, 719, 972, 978
BfuI	GTATCC	2 cut(s)	346, 643
BisI	GCNGC	2 cut(s)	196, 627
BlsI	GCNGC	2 cut(s)	197, 628
Bme1390I	CCNGG	1 cut(s)	749
BmgT120I	GGNCC	3 cut(s)	745, 771, 789
BmrFI	CCNGG	1 cut(s)	749
BmrI	ACTGGG	3 cut(s)	88, 400, 778
BmsI	GCATC	3 cut(s)	494, 576, 958
BmuI	ACTGGG	3 cut(s)	88, 400, 778
BpiI	GAAGAC	1 cut(s)	926
BpmI	CTGGAG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 743
Bse1I	ACTGG	4 cut(s)	94, 160, 395, 773
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	603, 743
BseMII	CTCAG	2 cut(s)	27, 705
BseNI	ACTGG	4 cut(s)	94, 160, 395, 773
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	182, 613
BseYI	CCCAGC	2 cut(s)	688, 868
BshFI	GGCC	3 cut(s)	747, 773, 790
BsiHKAI	GWGCWC	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	705
BslI	CCNNNNNNNGG	2 cut(s)	603, 743
BsmFI	GGGAC	1 cut(s)	705
BsnI	GGCC	3 cut(s)	747, 773, 790
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	4 cut(s)	146, 188, 402, 613
Bsp19I	CCATGG	1 cut(s)	347
BspANI	GGCC	3 cut(s)	747, 773, 790
BspCNI	CTCAG	2 cut(s)	28, 706
BspPI	GGATC	3 cut(s)	154, 410, 608
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	4 cut(s)	94, 160, 395, 773
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	146, 188, 402, 613
BssNAI	GTATAC	1 cut(s)	784
BssT1I	CCWWGG	1 cut(s)	347
Bst1107I	GTATAC	1 cut(s)	784
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	3 cut(s)	741, 755, 905
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	515, 818, 948
BstDEI	CTNAG	2 cut(s)	36, 714
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	4 cut(s)	149, 191, 405, 616
BstMBI	GATC	4 cut(s)	146, 188, 402, 613
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	182, 613
BstV2I	GAAGAC	1 cut(s)	926
BstZ17I	GTATAC	1 cut(s)	784
BsuI	GTATCC	2 cut(s)	346, 643
BsuRI	GGCC	3 cut(s)	747, 773, 790
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	515, 818, 948
Cfr13I	GGNCC	3 cut(s)	745, 771, 789
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	3 cut(s)	226, 348, 1001
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	2 cut(s)	36, 714
DpnI	GATC	4 cut(s)	148, 190, 404, 615
DpnII	GATC	4 cut(s)	146, 188, 402, 613
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	864
EcoRII	CCWGG	1 cut(s)	747
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	3 cut(s)	229, 351, 1004
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	705
FatI	CATG	3 cut(s)	225, 347, 1000
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	2 cut(s)	196, 627
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	196, 627
FspBI	CTAG	4 cut(s)	524, 719, 972, 978
GluI	GCNGC	2 cut(s)	196, 627
GsaI	CCCAGC	2 cut(s)	692, 872
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	747, 773, 790
HapII	CCGG	1 cut(s)	896
Hin1II	CATG	3 cut(s)	229, 351, 1004
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	2 cut(s)	552, 682
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	2 cut(s)	298, 572
Hpy166II	GTNNAC	5 cut(s)	597, 763, 784, 808, 901
Hpy188I	TCNGA	6 cut(s)	37, 81, 113, 120, 715, 909
Hpy8I	GTNNAC	5 cut(s)	597, 763, 784, 808, 901
Hpy99I	CGWCG	1 cut(s)	913
HpyAV	CCTTC	3 cut(s)	316, 368, 913
HpyCH4III	ACNGT	3 cut(s)	741, 755, 905
HpyCH4V	TGCA	7 cut(s)	198, 485, 513, 629, 763, 820, 857
HpyF3I	CTNAG	2 cut(s)	36, 714
Hsp92II	CATG	3 cut(s)	229, 351, 1004
Kzo9I	GATC	4 cut(s)	146, 188, 402, 613
Lsp1109I	GCAGC	2 cut(s)	182, 613
LweI	GCATC	3 cut(s)	494, 576, 958
MaeI	CTAG	4 cut(s)	524, 719, 972, 978
MalI	GATC	4 cut(s)	148, 190, 404, 615
MboI	GATC	4 cut(s)	146, 188, 402, 613
MboII	GAAGA	8 cut(s)	248, 407, 595, 836, 857, 926, 928, 977
MfeI	CAATTG	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	765
MmeI	TCCRAC	1 cut(s)	932
MnlI	CCTC	4 cut(s)	31, 107, 542, 870
Mph1103I	ATGCAT	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	123, 138, 251, 342, 539
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	1 cut(s)	749
MunI	CAATTG	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	4 cut(s)	146, 188, 402, 613
NlaIII	CATG	3 cut(s)	229, 351, 1004
NsiI	ATGCAT	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	552, 682
PkrI	GCNGC	2 cut(s)	197, 628
PshBI	ATTAAT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	747
PspFI	CCCAGC	2 cut(s)	688, 868
PspGI	CCWGG	1 cut(s)	747
PspPI	GGNCC	3 cut(s)	745, 771, 789
PvuII	CAGCTG	1 cut(s)	657
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
SaqAI	TTAA	5 cut(s)	123, 138, 251, 342, 539
SatI	GCNGC	2 cut(s)	196, 627
Sau3AI	GATC	4 cut(s)	146, 188, 402, 613
Sau96I	GGNCC	3 cut(s)	745, 771, 789
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	494, 576, 958
SpeI	ACTAGT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	524, 719, 972, 978
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	741, 755, 905
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	2 cut(s)	552, 682
Tru1I	TTAA	5 cut(s)	123, 138, 251, 342, 539
Tru9I	TTAA	5 cut(s)	123, 138, 251, 342, 539
TseI	GCWGC	2 cut(s)	195, 626
TspDTI	ATGAA	3 cut(s)	660, 929, 989
VneI	GTGCAC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	539
XapI	RAATTY	2 cut(s)	437, 709
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	524, 719, 972, 978
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.