Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Reverse (-)

23857821 .. 23859778

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTGAGGAGCTACTTAGCAACATGATGGATTGTGCAGCAAAGCTTAAAGAGTTTACAGCAGAGGACTTGAAAGCATGCACCAATGGTTTTCACCAGAACAACCTGATTGGAGCTACTCAGTTTGGCAAATTATATAGAGGACAGATTAAGCTAGGGTTTATTGGAACAGATCAAGCTCGAGCCGTTACAGTCAAAATATGGGATGAGAAGTCAAGGTGCATAACATCCATACATGATGAGTTTCTGATGGTTAAGGAAGAAGTTCAGTTTTTAACACATCCAAGTATAAATGGTCATCCAAACTTGGTGAAATTGATTGGTTATTGCTGTGAAAAGGAAGTCAAGGCTGTTGTCTATGACCTCAATCCATGGGATACTCTGCATAATTTGACAGTGAAAGATTATCTCAACTGGGTTCAGAGGCTCAATGTGCTTCTCCAATTTGCACGCCTCCTTGAATTTCTACACAACCAGGACAAGCCATATTTGGTGTTGAACATCAATGCATCTCATATAATGCTGGATTGGGATTGCAGGCCAAAATTATTTGATTTTGGACACATTACTGGAGGAATCATTGGTGAAATGACCACACTAAAAAAGCAGATACCAATCTCCATTGGCTTTGTTGATCCATTTTTCACTGCAAAAGGTGGTAGTTTTTGGCACACAAGCTGTGATGTGTTTTCATTTGGTGTGATTCTCTTAGGCCTAATAGCTAAGAGAGGCTTTGAGCCAGTCTGTGTGGAAAACCCCCATTTGGGACTGGACTGTTTAGTACAGTACTGGGCCAAGAAGGAATACAAGCCCAATGGGTCACTTGTCCACAGGAGCTTGCAGGAAGACTGGGGTTACGTTGATGAAGATGGTCTTGCAATTACAGAGCTGGGAATGCGTTGTGTTGAATTCTTCCCAAGAAACCGCCCTACAATTAAGAAAGCTGTTGAGCTTCTTGAGGGTTTACTGGTTTTTCAACGCTTTGGTGATGCCAGGCCTAACAAAAGAGAAAAGACATTTCACGGCATTGGCAACCATGCAGGAGGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

351

Amino Acids

39.76

Weight (kDa)

6.67

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	925
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	461, 908
AcvI	CACGTG	1 cut(s)	1050
AfaI	GTAC	2 cut(s)	783, 788
AfiI	CCNNNNNNNGG	2 cut(s)	763, 764
AgsI	TTSAA	5 cut(s)	73, 461, 499, 908, 977
AjnI	CCWGG	2 cut(s)	474, 992
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	4 cut(s)	539, 712, 792, 995
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	461, 908
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	4 cut(s)	86, 322, 596, 998
AvaI	CYCGRG	1 cut(s)	180
BbrPI	CACGTG	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	852
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	3 cut(s)	22, 244, 863
BceAI	ACGGC	2 cut(s)	170, 1039
BciT130I	CCWGG	2 cut(s)	476, 994
BciVI	GTATCC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmcAI	AGTACT	1 cut(s)	788
Bme1390I	CCNGG	2 cut(s)	476, 994
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	476, 994
BmrI	ACTGGG	3 cut(s)	424, 799, 859
BmsI	GCATC	2 cut(s)	518, 979
BmuI	ACTGGG	3 cut(s)	424, 799, 859
BpiI	GAAGAC	1 cut(s)	852
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	977
BsaAI	YACGTR	1 cut(s)	1050
BsaBI	GATNNNNATC	1 cut(s)	614
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 764
Bse1I	ACTGG	7 cut(s)	419, 574, 740, 774, 794, 854, 972
Bse8I	GATNNNNATC	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	476, 994
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	4 cut(s)	211, 227, 280, 298
BseJI	GATNNNNATC	1 cut(s)	614
BseLI	CCNNNNNNNGG	2 cut(s)	763, 764
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	7 cut(s)	419, 574, 740, 774, 794, 854, 972
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	889
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	541, 714, 794, 997
BsiHKCI	CYCGRG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	763, 764
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	4 cut(s)	541, 714, 794, 997
BsoBI	CYCGRG	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	172, 634
Bsp19I	CCATGG	1 cut(s)	371
BspACI	CCGC	1 cut(s)	925
BspANI	GGCC	4 cut(s)	541, 714, 794, 997
BspCNI	CTCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	629
BsrI	ACTGG	7 cut(s)	419, 574, 740, 774, 794, 854, 972
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	2 cut(s)	172, 634
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	476, 994
Bst4CI	ACNGT	4 cut(s)	193, 397, 776, 786
BstBAI	YACGTR	1 cut(s)	1050
BstC8I	GCNNGC	4 cut(s)	79, 451, 539, 839
BstDEI	CTNAG	5 cut(s)	6, 17, 120, 709, 723
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	4 cut(s)	211, 227, 280, 298
BstKTI	GATC	2 cut(s)	175, 637
BstMBI	GATC	2 cut(s)	172, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 895
BstNI	CCWGG	2 cut(s)	476, 994
BstNSI	RCATGY	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	474, 992
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	541, 714, 794, 997
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	4 cut(s)	211, 227, 280, 298
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	402, 645
Cac8I	GCNNGC	4 cut(s)	79, 451, 539, 839
Cfr13I	GGNCC	1 cut(s)	792
Csp6I	GTAC	2 cut(s)	782, 787
CviAII	CATG	5 cut(s)	25, 78, 236, 372, 1037
CviQI	GTAC	2 cut(s)	782, 787
DdeI	CTNAG	5 cut(s)	6, 17, 120, 709, 723
DpnI	GATC	2 cut(s)	174, 636
DpnII	GATC	2 cut(s)	172, 634
Eco130I	CCWWGG	1 cut(s)	371
Eco147I	AGGCCT	2 cut(s)	714, 997
Eco72I	CACGTG	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	2 cut(s)	474, 992
EcoT14I	CCWWGG	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	5 cut(s)	28, 81, 239, 375, 1040
FalI	AAGNNNNNCTT	4 cut(s)	716, 748, 858, 890
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	24, 77, 235, 371, 1036
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	4 cut(s)	214, 218, 267, 285
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	39
GsaI	CCCAGC	1 cut(s)	893
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	4 cut(s)	541, 714, 794, 997
Hin1II	CATG	5 cut(s)	28, 81, 239, 375, 1040
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	576, 703
HphI	GGTGA	4 cut(s)	86, 322, 596, 998
Hpy166II	GTNNAC	3 cut(s)	57, 829, 965
Hpy188I	TCNGA	2 cut(s)	249, 423
Hpy188III	TCNNGA	1 cut(s)	956
Hpy8I	GTNNAC	3 cut(s)	57, 829, 965
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	4 cut(s)	193, 397, 776, 786
HpyCH4IV	ACGT	2 cut(s)	858, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 895
HpyF3I	CTNAG	5 cut(s)	6, 17, 120, 709, 723
HpySE526I	ACGT	2 cut(s)	858, 1049
Hsp92II	CATG	5 cut(s)	28, 81, 239, 375, 1040
Kzo9I	GATC	2 cut(s)	172, 634
LmnI	GCTCC	3 cut(s)	10, 113, 834
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	518, 979
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	858, 1049
MaeIII	GTNAC	3 cut(s)	187, 819, 854
MalI	GATC	2 cut(s)	174, 636
MboI	GATC	2 cut(s)	172, 634
MboII	GAAGA	4 cut(s)	272, 857, 878, 904
MluCI	AATT	9 cut(s)	131, 314, 388, 443, 461, 545, 879, 908, 933
MnlI	CCTC	9 cut(s)	58, 134, 374, 417, 464, 566, 722, 952, 1037
Mph1103I	ATGCAT	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	5 cut(s)	48, 150, 255, 275, 936
MspR9I	CCNGG	2 cut(s)	476, 994
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	2 cut(s)	476, 994
MwoI	GCNNNNNNNGC	2 cut(s)	433, 895
NcoI	CCATGG	1 cut(s)	371
NdeII	GATC	2 cut(s)	172, 634
NlaIII	CATG	5 cut(s)	28, 81, 239, 375, 1040
NmuCI	GTSAC	1 cut(s)	819
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	180
PceI	AGGCCT	2 cut(s)	714, 997
PctI	GAATGC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	576, 703
PkrI	GCNGC	1 cut(s)	40
PmaCI	CACGTG	1 cut(s)	1050
PmlI	CACGTG	1 cut(s)	1050
Ppu21I	YACGTR	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	474, 992
PspCI	CACGTG	1 cut(s)	1050
PspFI	CCCAGC	1 cut(s)	889
PspGI	CCWGG	2 cut(s)	474, 992
PspPI	GGNCC	1 cut(s)	792
PspXI	VCTCGAGB	1 cut(s)	180
RsaI	GTAC	2 cut(s)	783, 788
RsaNI	GTAC	2 cut(s)	782, 787
SaqAI	TTAA	5 cut(s)	48, 150, 255, 275, 936
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	172, 634
Sau96I	GGNCC	1 cut(s)	792
ScaI	AGTACT	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	476, 994
SfaNI	GCATC	2 cut(s)	518, 979
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	180, 956
SmoI	CTYRAG	2 cut(s)	180, 956
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	9 cut(s)	131, 314, 388, 443, 461, 545, 879, 908, 933
SseBI	AGGCCT	2 cut(s)	714, 997
SsiI	CCGC	1 cut(s)	925
SspMI	CTAG	1 cut(s)	155
StuI	AGGCCT	2 cut(s)	714, 997
StyD4I	CCNGG	2 cut(s)	474, 992
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	193, 397, 776, 786
TaiI	ACGT	2 cut(s)	861, 1052
TaqI	TCGA	1 cut(s)	181
TasI	AATT	9 cut(s)	131, 314, 388, 443, 461, 545, 879, 908, 933
TatI	WGTACW	2 cut(s)	781, 786
TfiI	GAWTC	2 cut(s)	576, 703
Tru1I	TTAA	5 cut(s)	48, 150, 255, 275, 936
Tru9I	TTAA	5 cut(s)	48, 150, 255, 275, 936
TscAI	CASTG	2 cut(s)	402, 652
TseFI	GTSAC	1 cut(s)	819
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	819
TspDTI	ATGAA	2 cut(s)	681, 879
TspRI	CASTG	2 cut(s)	402, 652
XapI	RAATTY	2 cut(s)	461, 908
XceI	RCATGY	1 cut(s)	81
XhoI	CTCGAG	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	788
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.