Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0016828

Physical Location & Seq

Genomic Coordinates Forward (+)

7019299 .. 7021214

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAATCAGCTATTTTTCTGCTCAGTTGTCATCTGAATTTTTTTCTGTGGCTGATGGATTCTGCAGCAAACATTACAGTGTTTACATCTGGGGACTTGAAAGCATGCACCAATGATTTTCACCAGAAAAACCTGATTGGATTTACCCAGTTCGGTAAATTATATCGAGGACGGATTAGGCAAGGATTTACTGGAACAGATCAAGTTCGAGATGTTACAGTAAAAATATGGGATGAAAAATCAGCAGGCTGCAGTAAACTCATGCATGATGAGTTTCTGGTGGTTAAGGAAGAAGTCGAATTTTTGACACATCCCACTTTAAATGGTCATCCAAACTTGGTGAAATTGATTGCTTACTGCTGTGAAAAAGAAGTGAAAGGTGTTGTTTATGACCTCAATCCATGGGACACACTGCATAATTTGACTGACAAGGATTATCTCAACTGGGTTCAGAGGGTGAATGTGCTTGTGCAATTAGCAGGCCTGCTTGAATTTCTACACAACAAGGAGAAGCCATATTTGGTGCTAAATACGAATGCATCTCATATAATTCTGGATCGGGATTGCAAGCCAAAATTATTTGATTTTGGACTCATTAGTGGAGGAATCAATGGTGAAATGACTACACCAAAAAAGCAGATACCAATGTCCATCGGCTTTGTTGACCCATTTTTTGCTGCTAAAGGTGGTAGGTATTGGCATACGAGCTGTGATGTGTACTCATTCGGTGTGATTCTCTTGGGCCTGATAGCCAAGAGAGGGTTTGAGCCAGAGAGTGTGGAAGAACCCCATTTGGGCCTGGACAATTTAGTCCAGTACTGGGCCAAGAAGGAATATAAGCCCAATTGCTCACTTGTCCACAGAAGCTTACAGGAAGACTGGAGTTATGTTATTGAAGATGGTACGGCAATTACAGAGCTGGGGATGCGTTGTGTTGAATTTTTCCCGACAAACCGTCCGACAATGAAGAACGTTGTTGAAAGTCTTGAAGGTTTAATGCTTTTACAACGGTTTGGTGATGCTAGACCTAACAAAAGGGAGAAGACAGTTCATGGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

40.29

Weight (kDa)

6.32

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016828)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23630
malus_domestica	MD13G1120500.v1.1
prunus_persica	Prupe.1G224700_v2.0.a1
pyrus_communis	pycom13g10490
rosa_chinensis	RchiOBHm_Chr4g0430091
rosa_laevigata	RLG00000007004
rosa_multiflora	Rmu_ssc0000150.1_g000025
rosa_roxburghii	Rroxscaffold_5G00371910
rosa_rugosa	Rorug04G0240100
rosa_samantha	Rh4AG297200 Rh4BG303600 Rh4CG319200 Rh4DG301100
rosa_wichuraiana	Rw4G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	809
AclI	AACGTT	1 cut(s)	972
AclWI	GGATC	1 cut(s)	564
AcsI	RAATTY	4 cut(s)	37, 299, 491, 938
AfaI	GTAC	3 cut(s)	719, 818, 904
AfiI	CCNNNNNNNGG	3 cut(s)	759, 794, 820
AgsI	TTSAA	6 cut(s)	100, 491, 896, 938, 980, 989
AhdI	GACNNNNNGTC	1 cut(s)	954
AjnI	CCWGG	1 cut(s)	798
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	4 cut(s)	11, 708, 867, 919
AluI	AGCT	4 cut(s)	11, 708, 867, 919
AlwI	GGATC	1 cut(s)	564
AoxI	GGCC	4 cut(s)	481, 742, 796, 822
ApeKI	GCWGC	3 cut(s)	65, 249, 677
ApoI	RAATTY	4 cut(s)	37, 299, 491, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspS9I	GGNCC	3 cut(s)	742, 796, 822
AsuHPI	GGTGA	5 cut(s)	113, 352, 469, 626, 1028
BaeI	ACNNNNGTAYC	2 cut(s)	632, 665
BbsI	GAAGAC	2 cut(s)	882, 1049
BbvI	GCAGC	3 cut(s)	77, 236, 664
BccI	CCATC	3 cut(s)	49, 659, 893
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	1 cut(s)	800
BfaI	CTAG	1 cut(s)	1023
BfmI	CTRYAG	2 cut(s)	63, 250
BisI	GCNGC	3 cut(s)	66, 250, 678
BlsI	GCNGC	3 cut(s)	67, 251, 679
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	1 cut(s)	800
BmeRI	GACNNNNNGTC	1 cut(s)	954
BmgT120I	GGNCC	3 cut(s)	742, 796, 822
BmrFI	CCNGG	1 cut(s)	800
BmrI	ACTGGG	3 cut(s)	142, 454, 829
BmsI	GCATC	3 cut(s)	548, 915, 1009
BmuI	ACTGGG	3 cut(s)	142, 454, 829
BpiI	GAAGAC	2 cut(s)	882, 1049
BpmI	CTGGAG	1 cut(s)	901
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	3 cut(s)	759, 794, 820
Bse1I	ACTGG	6 cut(s)	148, 196, 449, 814, 824, 884
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	4 cut(s)	238, 310, 328, 930
BseLI	CCNNNNNNNGG	3 cut(s)	759, 794, 820
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	6 cut(s)	148, 196, 449, 814, 824, 884
BseXI	GCAGC	3 cut(s)	77, 236, 664
BseYI	CCCAGC	1 cut(s)	919
BshFI	GGCC	4 cut(s)	483, 744, 798, 824
BslFI	GGGAC	2 cut(s)	107, 419
BslI	CCNNNNNNNGG	3 cut(s)	759, 794, 820
BsmFI	GGGAC	2 cut(s)	107, 419
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	483, 744, 798, 824
Bsp143I	GATC	2 cut(s)	199, 556
Bsp19I	CCATGG	1 cut(s)	401
BspANI	GGCC	4 cut(s)	483, 744, 798, 824
BspCNI	CTCAG	1 cut(s)	36
BspMAI	CTGCAG	2 cut(s)	67, 254
BspPI	GGATC	1 cut(s)	564
BsrI	ACTGG	6 cut(s)	148, 196, 449, 814, 824, 884
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	2 cut(s)	199, 556
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	5 cut(s)	79, 220, 956, 1011, 1048
BstC8I	GCNNGC	5 cut(s)	106, 247, 481, 485, 569
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	4 cut(s)	238, 310, 328, 930
BstKTI	GATC	2 cut(s)	202, 559
BstMBI	GATC	2 cut(s)	199, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	925
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	2 cut(s)	108, 1060
BstSCI	CCNGG	1 cut(s)	798
BstSFI	CTRYAG	2 cut(s)	63, 250
BstV1I	GCAGC	3 cut(s)	77, 236, 664
BstV2I	GAAGAC	2 cut(s)	882, 1049
BsuRI	GGCC	4 cut(s)	483, 744, 798, 824
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	4 cut(s)	238, 310, 328, 930
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	84, 410
Cac8I	GCNNGC	5 cut(s)	106, 247, 481, 485, 569
Cfr13I	GGNCC	3 cut(s)	742, 796, 822
Csp6I	GTAC	3 cut(s)	718, 817, 903
CviAII	CATG	6 cut(s)	105, 262, 266, 402, 1052, 1057
CviQI	GTAC	3 cut(s)	718, 817, 903
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	201, 558
DpnII	GATC	2 cut(s)	199, 556
DraI	TTTAAA	1 cut(s)	321
DrdI	GACNNNNNNGTC	1 cut(s)	809
DriI	GACNNNNNGTC	1 cut(s)	954
DseDI	GACNNNNNNGTC	1 cut(s)	809
Eam1105I	GACNNNNNGTC	1 cut(s)	954
Eco130I	CCWWGG	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	2 cut(s)	267, 541
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	6 cut(s)	108, 265, 269, 405, 1055, 1060
FaqI	GGGAC	2 cut(s)	107, 419
FatI	CATG	6 cut(s)	104, 261, 265, 401, 1051, 1056
Fnu4HI	GCNGC	3 cut(s)	66, 250, 678
FokI	GGATG	4 cut(s)	245, 297, 315, 937
Fsp4HI	GCNGC	3 cut(s)	66, 250, 678
FspBI	CTAG	1 cut(s)	1023
GluI	GCNGC	3 cut(s)	66, 250, 678
GsaI	CCCAGC	1 cut(s)	923
GsuI	CTGGAG	1 cut(s)	901
HaeIII	GGCC	4 cut(s)	483, 744, 798, 824
Hin1II	CATG	6 cut(s)	108, 265, 269, 405, 1055, 1060
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	865
HinfI	GANTC	5 cut(s)	5, 59, 591, 606, 733
HphI	GGTGA	5 cut(s)	113, 352, 469, 626, 1028
Hpy166II	GTNNAC	5 cut(s)	84, 257, 664, 718, 859
Hpy188I	TCNGA	3 cut(s)	36, 453, 960
Hpy188III	TCNNGA	5 cut(s)	209, 554, 560, 946, 986
Hpy8I	GTNNAC	5 cut(s)	84, 257, 664, 718, 859
HpyAV	CCTTC	2 cut(s)	823, 983
HpyCH4III	ACNGT	5 cut(s)	79, 220, 956, 1011, 1048
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	8 cut(s)	65, 108, 252, 265, 415, 472, 539, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	925
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	972
Hsp92II	CATG	6 cut(s)	108, 265, 269, 405, 1055, 1060
Kzo9I	GATC	2 cut(s)	199, 556
Lsp1109I	GCAGC	3 cut(s)	77, 236, 664
LweI	GCATC	3 cut(s)	548, 915, 1009
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	201, 558
MboI	GATC	2 cut(s)	199, 556
MboII	GAAGA	6 cut(s)	302, 794, 887, 908, 979, 1054
MfeI	CAATTG	1 cut(s)	844
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	983
MnlI	CCTC	5 cut(s)	161, 404, 447, 596, 752
Mph1103I	ATGCAT	2 cut(s)	267, 541
MseI	TTAA	3 cut(s)	285, 320, 995
MslI	CAYNNNNRTG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	800
MunI	CAATTG	1 cut(s)	844
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	1 cut(s)	925
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	2 cut(s)	199, 556
NlaIII	CATG	6 cut(s)	108, 265, 269, 405, 1055, 1060
NsiI	ATGCAT	2 cut(s)	267, 541
NspI	RCATGY	2 cut(s)	108, 1060
PaeI	GCATGC	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	4 cut(s)	5, 59, 606, 733
PkrI	GCNGC	3 cut(s)	67, 251, 679
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	798
PspFI	CCCAGC	1 cut(s)	919
PspGI	CCWGG	1 cut(s)	798
PspPI	GGNCC	3 cut(s)	742, 796, 822
PstI	CTGCAG	2 cut(s)	67, 254
RsaI	GTAC	3 cut(s)	719, 818, 904
RsaNI	GTAC	3 cut(s)	718, 817, 903
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	285, 320, 995
SatI	GCNGC	3 cut(s)	66, 250, 678
Sau3AI	GATC	2 cut(s)	199, 556
Sau96I	GGNCC	3 cut(s)	742, 796, 822
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	1 cut(s)	800
SfaNI	GCATC	3 cut(s)	548, 915, 1009
SfcI	CTRYAG	2 cut(s)	63, 250
SmiMI	CAYNNNNRTG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	108
SseBI	AGGCCT	1 cut(s)	483
SspMI	CTAG	1 cut(s)	1023
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	5 cut(s)	79, 220, 956, 1011, 1048
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	3 cut(s)	166, 208, 297
TatI	WGTACW	2 cut(s)	717, 816
TfiI	GAWTC	4 cut(s)	5, 59, 606, 733
Tru1I	TTAA	3 cut(s)	285, 320, 995
Tru9I	TTAA	3 cut(s)	285, 320, 995
TscAI	CASTG	2 cut(s)	84, 417
TseI	GCWGC	3 cut(s)	65, 249, 677
TspDTI	ATGAA	3 cut(s)	249, 980, 1040
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	84, 417
XapI	RAATTY	4 cut(s)	37, 299, 491, 938
XceI	RCATGY	2 cut(s)	108, 1060
XspI	CTAG	1 cut(s)	1023
ZrmI	AGTACT	1 cut(s)	818
Zsp2I	ATGCAT	2 cut(s)	267, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.