Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011557

Physical Location & Seq

Genomic Coordinates Reverse (-)

9144678 .. 9145173

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCATCTGTCGGAACCATGATTTTCTAAGTCAGTTTTTGGCATTTCAGCGGATCTGGTTCCAAATTTCCAATCTTATCTTCATAAAAAAATCTACCTTCTGTTTGTCTGCAACTCAAACCTTTATTCCCGGTAGATTAATATTTTTCTTTTGCTACATATGCAGCATTTCCAGCCTTATGTATCGCATGCGAACCGAAAATATAGTTTCTGTAATGTGCAATGGCCTGTGGATTATGAAGGATAAGAAGATTGTGAACGTGGATGAGGAAGAAGTTCTTGCAAAGGCAAAGCAAGCTTCCGCAGAACTTTCGAAGCGGGCAGGGATCAAAATACCAATTACCAAGCAGAAGGAATTTTCTTTAGGCCGAAGAAACGCCACACGTGAGGCAATGGATGAAGGGATCCCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

139

Amino Acids

15.91

Weight (kDa)

9.51

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011557)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23250 FvH4_4g23250 FvH4_4g23250 FvH4_4g23250
malus_domestica	MD10G1063400.v1.1 MD13G1123400.v1.1 MD16G1124200.v1.1
prunus_persica	Prupe.1G221400_v2.0.a1 Prupe.4G226800_v2.0.a1
pyrus_communis	pycom16g10610
rosa_chinensis	RchiOBHm_Chr4g0429611
rosa_laevigata	RLG00000007058
rosa_multiflora	Rmu_sc0006590.1_g000013 Rmu_sc0013109.1_g000001 Rmu_sc0017032.1_g000003
rosa_roxburghii	Rroxscaffold_5G00371300
rosa_rugosa	Rorug04G0237300
rosa_samantha	Rh4BG298900 Rh4CG314500
rosa_wichuraiana	Rw4G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 303, 319
AclWI	GGATC	4 cut(s)	62, 335, 400, 413
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	66, 356
AcvI	CACGTG	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AlwI	GGATC	4 cut(s)	62, 335, 400, 413
AoxI	GGCC	3 cut(s)	3, 226, 367
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	66, 356
AseI	ATTAAT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	132
AsuII	TTCGAA	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BcnI	CCSGG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	3 cut(s)	17, 62, 407
BmrFI	CCNGG	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse3DI	GCAATG	2 cut(s)	229, 399
BseGI	GGATG	2 cut(s)	271, 403
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	2 cut(s)	229, 399
BseXI	GCAGC	1 cut(s)	177
BshFI	GGCC	3 cut(s)	5, 228, 369
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	3 cut(s)	5, 228, 369
Bsp119I	TTCGAA	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	54, 327, 405
BspACI	CCGC	3 cut(s)	52, 303, 319
BspANI	GGCC	3 cut(s)	5, 228, 369
BspLI	GGNNCC	3 cut(s)	17, 62, 407
BspPI	GGATC	4 cut(s)	62, 335, 400, 413
BspT104I	TTCGAA	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	229, 399
BssMI	GATC	3 cut(s)	54, 327, 405
BstBAI	YACGTR	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	191, 297, 321
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	271, 403
BstKTI	GATC	3 cut(s)	57, 330, 408
BstMBI	GATC	3 cut(s)	54, 327, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 174, 296
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	2 cut(s)	54, 405
BstYI	RGATCY	2 cut(s)	54, 405
BsuRI	GGCC	3 cut(s)	5, 228, 369
BtsCI	GGATG	2 cut(s)	271, 403
Cac8I	GCNNGC	3 cut(s)	191, 297, 321
CviAII	CATG	2 cut(s)	20, 190
CviJI	RGCY	5 cut(s)	5, 177, 228, 299, 369
CviKI_1	RGCY	5 cut(s)	5, 177, 228, 299, 369
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	3 cut(s)	56, 329, 407
DpnII	GATC	3 cut(s)	54, 327, 405
EaeI	YGGCCR	1 cut(s)	3
Eco72I	CACGTG	1 cut(s)	386
FaeI	CATG	2 cut(s)	23, 193
FaiI	YATR	8 cut(s)	21, 86, 161, 163, 182, 191, 206, 239
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FatI	CATG	2 cut(s)	19, 189
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	278, 410
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	5, 228, 369
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	23, 193
HindIII	AAGCTT	1 cut(s)	297
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	4 cut(s)	109, 235, 346, 395
HpyCH4IV	ACGT	2 cut(s)	261, 385
HpyCH4V	TGCA	4 cut(s)	113, 165, 222, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 174, 296
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	2 cut(s)	261, 385
Hsp92II	CATG	2 cut(s)	23, 193
Kzo9I	GATC	3 cut(s)	54, 327, 405
LpnPI	CCDG	5 cut(s)	43, 145, 187, 242, 309
Lsp1109I	GCAGC	1 cut(s)	177
MaeII	ACGT	2 cut(s)	261, 385
MalI	GATC	3 cut(s)	56, 329, 407
MboI	GATC	3 cut(s)	54, 327, 405
MboII	GAAGA	4 cut(s)	73, 262, 284, 384
MflI	RGATCY	2 cut(s)	54, 405
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	66, 339, 356
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	262, 382
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	162, 174, 296
NciI	CCSGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	161
NdeII	GATC	3 cut(s)	54, 327, 405
NlaIII	CATG	2 cut(s)	23, 193
NlaIV	GGNNCC	3 cut(s)	17, 62, 407
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	386
PmlI	CACGTG	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	386
PshBI	ATTAAT	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	386
PspN4I	GGNNCC	3 cut(s)	17, 62, 407
PsuI	RGATCY	2 cut(s)	54, 405
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	54, 327, 405
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	5 cut(s)	101, 125, 264, 301, 388
SfuI	TTCGAA	1 cut(s)	314
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	66, 339, 356
SsiI	CCGC	3 cut(s)	52, 303, 319
SspI	AATATT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	264, 388
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	66, 339, 356
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	73, 254, 414
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	2 cut(s)	66, 356
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.