Rorug04G0237300

Indole-3-acetic acid-induced protein ARG7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000824
Physical Location & Seq
Reverse (-)
40390445 .. 40392243
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0237300.1

Sequence Viewer

Length: 1065 bp
ATGGTGAGGTTGAATAATAGGAGAAATGCTGCAGCTAAGTGGAGATGCAACGTTGGACCCAGAATTGAAAAGCTTTTGAAGAAGAATGCTACCTGGAGTCATGATTACAAGGCGCTGCAGTCAAGTGAGCAGAGGTTTGATTTGCAAGGAAGAGGGGTTGCATGTGAGAGTGGAGTAATCAGTCAACATTTTGTTCAACTAGATATGAAGTCATGCACTTGCAGAAGATGGGATCTCTCTGCACTCCCATGTGGACATGTTATAGCAGCACTTTATAGCAAAGGTTGGAGCCCAGATGACTTTGTCTCTGAGTGGTATACTAAGAAGAAATATTTGGAGGCATATGAGGTTGTCATAAATCCCATTGCTGGTGTGGCTGAATGGGAAAAAAAGGATAGGTCAATAGCACCTCCATTGTATAGGAGGCAGCCAGGGAGGCCCAAAAGCAAGAGGACCAAAGAACCAGGTGAGGAACCCCTACTAGCTGGAGTTGAAAGGCTCCCAAAAAGCTACTACTCTCAGATCACTTGTGGCACATGTCACCAGAAGGGTCATAATAAGAGGACTTGTCAAAGAAGGAACCAAGGTAGGAATGCAGCAGGTGAGACTCAAGTTCCACAAGTGCATGTTCAGCCTGAAAATGATGCACATAATGTTCAACCAGCAGCAGAGAACACAGAAGATATCCACATTCCAGATGGTGAACCACTGCCTACACAAGAATCAACCTTTGATAATGCAGATCATTTTCAATCTCAAACTTCATCTGCCATGCCCCCATCGGTGAATGAGAATCAAAATGTCAACCTAAATGTCAATGTCAATCTTAACATTGACTCTGTAGGTATTGATGGGAATACTATGTTTTCTCAAACCACTAACAATGTTGTGCATCCAAGTTCTGAGGGATCCCCTGCTAGACCTGCTACCTCAGGCAAGCGAGTGAAGAGGACTGCAGGGAGGAAGTTTATAGCAAGGAAATCACCAAGGCTGGCTGCAGCTTCTGCATCCGCATCTGTTCAAGCTCCAAAGCCCAAACTGCAGAGGGCCTTGTGGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

354

Amino Acids

39.45

Weight (kDa)

9.61

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 63 - 94 6.8e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 2 cut(s) 590, 931
AccI GTMKAC 1 cut(s) 317
AciI CCGC 1 cut(s) 1011
AclI AACGTT 1 cut(s) 51
AclWI GGATC 3 cut(s) 240, 903, 916
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 2 cut(s) 256, 536
AgsI TTSAA 8 cut(s) 13, 68, 79, 197, 494, 659, 752, 1022
AjnI CCWGG 3 cut(s) 92, 430, 463
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 6 cut(s) 35, 73, 485, 510, 1001, 1025
AluI AGCT 6 cut(s) 35, 73, 485, 510, 1001, 1025
Alw26I GTCTC 2 cut(s) 310, 599
AlwI GGATC 3 cut(s) 240, 903, 916
AlwNI CAGNNNCTG 1 cut(s) 1004
AoxI GGCC 2 cut(s) 437, 1047
ApeKI GCWGC 9 cut(s) 29, 32, 115, 266, 427, 596, 665, 995, 998
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 4 cut(s) 56, 438, 453, 1047
AsuHPI GGTGA 7 cut(s) 16, 479, 533, 614, 713, 796, 975
AvaII GGWCC 2 cut(s) 56, 453
AxyI CCTNAGG 1 cut(s) 931
BamHI GGATCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 293
BbvI GCAGC 9 cut(s) 16, 44, 102, 278, 439, 608, 677, 982, 1010
BccI CCATC 4 cut(s) 222, 692, 787, 845
BciT130I CCWGG 3 cut(s) 94, 432, 465
BcoDI GTCTC 2 cut(s) 310, 599
BfaI CTAG 3 cut(s) 200, 482, 918
BfmI CTRYAG 6 cut(s) 30, 116, 840, 954, 996, 1040
BfoI RGCGCY 1 cut(s) 116
BfuAI ACCTGC 2 cut(s) 590, 931
BglI GCCNNNNNGGC 1 cut(s) 436
BisI GCNGC 9 cut(s) 30, 33, 116, 267, 428, 597, 666, 996, 999
BlsI GCNGC 9 cut(s) 31, 34, 117, 268, 429, 598, 667, 997, 1000
Bme1390I CCNGG 3 cut(s) 94, 432, 465
Bme18I GGWCC 2 cut(s) 56, 453
BmgT120I GGNCC 4 cut(s) 56, 438, 453, 1047
BmiI GGNNCC 6 cut(s) 58, 290, 474, 500, 581, 910
BmrFI CCNGG 3 cut(s) 94, 432, 465
BmsI GCATC 5 cut(s) 35, 634, 901, 1016, 1022
BpmI CTGGAG 2 cut(s) 115, 507
BpuEI CTTGAG 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 431, 583, 986
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse21I CCTNAGG 1 cut(s) 931
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 3 cut(s) 94, 432, 465
BseDI CCNNGG 3 cut(s) 431, 583, 986
BseGI GGATG 2 cut(s) 892, 1007
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 4 cut(s) 300, 533, 894, 945
BseXI GCAGC 9 cut(s) 16, 44, 102, 278, 439, 608, 677, 982, 1010
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 439, 1049
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 2 cut(s) 310, 599
BsmI GAATGC 2 cut(s) 91, 598
BsnI GGCC 2 cut(s) 439, 1049
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 4 cut(s) 232, 522, 742, 908
BspACI CCGC 1 cut(s) 1011
BspANI GGCC 2 cut(s) 439, 1049
BspCNI CTCAG 4 cut(s) 301, 532, 895, 944
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 6 cut(s) 58, 290, 474, 500, 581, 910
BspMAI CTGCAG 5 cut(s) 34, 120, 958, 1000, 1044
BspMI ACCTGC 2 cut(s) 590, 931
BspPI GGATC 3 cut(s) 240, 903, 916
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 3 cut(s) 431, 583, 986
BssMI GATC 4 cut(s) 232, 522, 742, 908
BssNAI GTATAC 1 cut(s) 318
BssT1I CCWWGG 2 cut(s) 583, 986
Bst1107I GTATAC 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 94, 432, 465
Bst6I CTCTTC 2 cut(s) 145, 941
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstC8I GCNNGC 2 cut(s) 938, 993
BstDEI CTNAG 6 cut(s) 36, 309, 321, 519, 903, 931
BstF5I GGATG 2 cut(s) 892, 1007
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 4 cut(s) 235, 525, 745, 911
BstMAI GTCTC 2 cut(s) 310, 599
BstMBI GATC 4 cut(s) 232, 522, 742, 908
BstMWI GCNNNNNNNGC 6 cut(s) 374, 436, 631, 923, 1004, 1039
BstNI CCWGG 3 cut(s) 94, 432, 465
BstNSI RCATGY 4 cut(s) 165, 260, 540, 629
BstSCI CCNGG 3 cut(s) 92, 430, 463
BstSFI CTRYAG 6 cut(s) 30, 116, 840, 954, 996, 1040
BstV1I GCAGC 9 cut(s) 16, 44, 102, 278, 439, 608, 677, 982, 1010
BstX2I RGATCY 2 cut(s) 232, 908
BstYI RGATCY 2 cut(s) 232, 908
BstZ17I GTATAC 1 cut(s) 318
Bsu36I CCTNAGG 1 cut(s) 931
BsuRI GGCC 2 cut(s) 439, 1049
BtsCI GGATG 2 cut(s) 892, 1007
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 1 cut(s) 707
BveI ACCTGC 2 cut(s) 590, 931
Cac8I GCNNGC 2 cut(s) 938, 993
CaiI CAGNNNCTG 1 cut(s) 1004
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 4 cut(s) 56, 438, 453, 1047
CsiI ACCWGGT 1 cut(s) 463
CviAII CATG 9 cut(s) 101, 162, 213, 249, 257, 537, 626, 772, 1062
DdeI CTNAG 6 cut(s) 36, 309, 321, 519, 903, 931
DpnI GATC 4 cut(s) 234, 524, 744, 910
DpnII GATC 4 cut(s) 232, 522, 742, 908
Eam1104I CTCTTC 2 cut(s) 145, 941
EarI CTCTTC 2 cut(s) 145, 941
Eco130I CCWWGG 2 cut(s) 583, 986
Eco24I GRGCYC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 2 cut(s) 56, 453
Eco81I CCTNAGG 1 cut(s) 931
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 3 cut(s) 92, 430, 463
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 583, 986
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 2 cut(s) 583, 986
FaeI CATG 9 cut(s) 104, 165, 216, 252, 260, 540, 629, 775, 1065
FatI CATG 9 cut(s) 100, 161, 212, 248, 256, 536, 625, 771, 1061
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 317
Fnu4HI GCNGC 9 cut(s) 30, 33, 116, 267, 428, 597, 666, 996, 999
FokI GGATG 2 cut(s) 879, 994
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 9 cut(s) 30, 33, 116, 267, 428, 597, 666, 996, 999
FspBI CTAG 3 cut(s) 200, 482, 918
GlaI GCGC 1 cut(s) 114
GluI GCNGC 9 cut(s) 30, 33, 116, 267, 428, 597, 666, 996, 999
GsuI CTGGAG 2 cut(s) 115, 507
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 2 cut(s) 439, 1049
HhaI GCGC 1 cut(s) 115
Hin1II CATG 9 cut(s) 104, 165, 216, 252, 260, 540, 629, 775, 1065
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 2 cut(s) 185, 805
HindII GTYRAC 2 cut(s) 185, 805
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 5 cut(s) 97, 607, 722, 793, 836
HphI GGTGA 7 cut(s) 16, 479, 533, 614, 713, 796, 975
Hpy166II GTNNAC 5 cut(s) 185, 254, 318, 704, 805
Hpy188I TCNGA 3 cut(s) 310, 522, 904
Hpy188III TCNNGA 2 cut(s) 101, 695
Hpy8I GTNNAC 5 cut(s) 185, 254, 318, 704, 805
HpyAV CCTTC 2 cut(s) 541, 570
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 436, 631, 923, 1004, 1039
HpyF3I CTNAG 6 cut(s) 36, 309, 321, 519, 903, 931
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 9 cut(s) 104, 165, 216, 252, 260, 540, 629, 775, 1065
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 4 cut(s) 232, 522, 742, 908
LmnI GCTCC 3 cut(s) 288, 504, 1030
Lsp1109I GCAGC 9 cut(s) 16, 44, 102, 278, 439, 608, 677, 982, 1010
LweI GCATC 5 cut(s) 35, 634, 901, 1016, 1022
MabI ACCWGGT 1 cut(s) 463
MaeI CTAG 3 cut(s) 200, 482, 918
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 539
MalI GATC 4 cut(s) 234, 524, 744, 910
MboI GATC 4 cut(s) 232, 522, 742, 908
MboII GAAGA 7 cut(s) 91, 94, 162, 237, 337, 692, 958
MflI RGATCY 2 cut(s) 232, 908
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 1 cut(s) 63
MlyI GAGTC 3 cut(s) 106, 601, 830
MmeI TCCRAC 2 cut(s) 34, 266
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 1 cut(s) 247
MspR9I CCNGG 3 cut(s) 94, 432, 465
Mva1269I GAATGC 2 cut(s) 91, 598
MvaI CCWGG 3 cut(s) 94, 432, 465
MwoI GCNNNNNNNGC 6 cut(s) 374, 436, 631, 923, 1004, 1039
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 232, 522, 742, 908
NlaIII CATG 9 cut(s) 104, 165, 216, 252, 260, 540, 629, 775, 1065
NlaIV GGNNCC 6 cut(s) 58, 290, 474, 500, 581, 910
NmuCI GTSAC 1 cut(s) 539
NspI RCATGY 4 cut(s) 165, 260, 540, 629
PagI TCATGA 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 590
PciI ACATGT 2 cut(s) 256, 536
PctI GAATGC 2 cut(s) 91, 598
PfeI GAWTC 2 cut(s) 722, 793
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 9 cut(s) 31, 34, 117, 268, 429, 598, 667, 997, 1000
PleI GAGTC 3 cut(s) 105, 601, 830
PpsI GAGTC 3 cut(s) 105, 601, 830
PscI ACATGT 2 cut(s) 256, 536
Psp1406I AACGTT 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 92, 430, 463
PspGI CCWGG 3 cut(s) 92, 430, 463
PspN4I GGNNCC 6 cut(s) 58, 290, 474, 500, 581, 910
PspPI GGNCC 4 cut(s) 56, 438, 453, 1047
PstI CTGCAG 5 cut(s) 34, 120, 958, 1000, 1044
PstNI CAGNNNCTG 1 cut(s) 1004
PsuI RGATCY 2 cut(s) 232, 908
PsyI GACNNNGTC 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 9 cut(s) 30, 33, 116, 267, 428, 597, 666, 996, 999
Sau3AI GATC 4 cut(s) 232, 522, 742, 908
Sau96I GGNCC 4 cut(s) 56, 438, 453, 1047
SchI GAGTC 3 cut(s) 106, 601, 830
ScrFI CCNGG 3 cut(s) 94, 432, 465
SduI GDGCHC 1 cut(s) 293
SexAI ACCWGGT 1 cut(s) 463
SfaNI GCATC 5 cut(s) 35, 634, 901, 1016, 1022
SfcI CTRYAG 6 cut(s) 30, 116, 840, 954, 996, 1040
SinI GGWCC 2 cut(s) 56, 453
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 1011
SspI AATATT 1 cut(s) 332
SspMI CTAG 3 cut(s) 200, 482, 918
StyD4I CCNGG 3 cut(s) 92, 430, 463
StyI CCWWGG 2 cut(s) 583, 986
TaiI ACGT 1 cut(s) 54
TasI AATT 1 cut(s) 63
TfiI GAWTC 2 cut(s) 722, 793
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 9 cut(s) 29, 32, 115, 266, 427, 596, 665, 995, 998
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 221, 753
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 56, 453
XceI RCATGY 4 cut(s) 165, 260, 540, 629
XcmI CCANNNNNNNNNTGG 2 cut(s) 370, 695
XmiI GTMKAC 1 cut(s) 317
XspI CTAG 3 cut(s) 200, 482, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.