Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

60715517 .. 60717203

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGTCGGCGACGGAGTGTTCTAAGTGGCGGCTGAGTGAAGACGACGTCGGCGGCAGTGGTGTTGAGGATGACGGCATGGATATCGTGAAGGGAAAGTGGACGAAGAATCTGATCATCAAGGCGTGGAAGCGATGCAGTACTTTACCGAAACAAAGCAGCAGGAAAGGCTCTACAGCAGCAGCTTCATTGACAAGGAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGACATGCCTAGTCGCTCCAGTTGGGTGTTTCACGGTCCATGTTGGACCCGAAAAGCAGCGATTTGTGGTGAGGATGGAGTATGTTAATCATCCATTGTTCAAGATGCTGCTGGAGGATGCAGCATTGGAGTACGGGTACAAAAGTGACGGTCCGATAGTGCTTCCTTGCCATGTGGATCTGTTCTGCAATGTTATGGCAGAGATGGAGAACAATGATATCGATGAGGATAGGATCAGTGCTCCCAGTAATTGTTCTCCGATAATCTTCAGTCCAGCTCGCCGTAGAAATTGTGCCAGTAACAGAGGTTACAGTGGTGCTTATAGGGTACTTAGTCCAACATCATCGTCATCATCAATGGTGGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

212

Amino Acids

23.12

Weight (kDa)

8.95

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	69 - 155	3.5e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AciI	CCGC	2 cut(s)	31, 54
AclWI	GGATC	2 cut(s)	450, 506
AcuI	CTGAAG	1 cut(s)	517
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	6 cut(s)	142, 220, 232, 398, 404, 594
AgsI	TTSAA	1 cut(s)	367
AhlI	ACTAGT	1 cut(s)	224
AluBI	AGCT	3 cut(s)	185, 213, 542
AluI	AGCT	3 cut(s)	185, 213, 542
Alw21I	GWGCWC	2 cut(s)	215, 508
AlwI	GGATC	2 cut(s)	450, 506
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	6 cut(s)	159, 179, 182, 322, 373, 386
AspS9I	GGNCC	3 cut(s)	301, 311, 416
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	3 cut(s)	301, 311, 416
BaeI	ACNNNNGTAYC	2 cut(s)	394, 427
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	215, 508
BbvI	GCAGC	6 cut(s)	171, 191, 194, 334, 360, 398
BccI	CCATC	2 cut(s)	334, 463
BceAI	ACGGC	2 cut(s)	91, 531
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BclI	TGATCA	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	225, 275, 634
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	8 cut(s)	32, 55, 160, 180, 183, 323, 374, 387
BlsI	GCNGC	8 cut(s)	33, 56, 161, 181, 184, 324, 375, 388
BmcAI	AGTACT	3 cut(s)	142, 220, 232
Bme18I	GGWCC	3 cut(s)	301, 311, 416
BmgT120I	GGNCC	3 cut(s)	301, 311, 416
BmiI	GGNNCC	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	125, 360, 373
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	3 cut(s)	199, 267, 398
Bsa29I	ATCGAT	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 386, 416
Bse1I	ACTGG	5 cut(s)	216, 238, 284, 510, 561
Bse3DI	GCAATG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	486
BseGI	GGATG	4 cut(s)	76, 345, 355, 388
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	5 cut(s)	216, 238, 284, 510, 561
BseXI	GCAGC	6 cut(s)	171, 191, 194, 334, 360, 398
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	2 cut(s)	215, 508
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	215, 508
Bsp143I	GATC	3 cut(s)	114, 442, 498
BspACI	CCGC	2 cut(s)	31, 54
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	450, 506
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	5 cut(s)	216, 238, 284, 510, 561
BssMI	GATC	3 cut(s)	114, 442, 498
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	301, 416, 578
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	245, 544
BstDEI	CTNAG	3 cut(s)	24, 35, 596
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	4 cut(s)	76, 345, 355, 388
BstKTI	GATC	3 cut(s)	117, 445, 501
BstMBI	GATC	3 cut(s)	114, 442, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	6 cut(s)	171, 191, 194, 334, 360, 398
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	4 cut(s)	76, 345, 355, 388
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 508, 583
Cac8I	GCNNGC	2 cut(s)	245, 544
Cfr13I	GGNCC	3 cut(s)	301, 311, 416
ClaI	ATCGAT	1 cut(s)	486
CpoI	CGGWCCG	1 cut(s)	416
Csp6I	GTAC	6 cut(s)	141, 219, 231, 397, 403, 593
CspI	CGGWCCG	1 cut(s)	416
CviAII	CATG	5 cut(s)	79, 207, 270, 305, 437
CviJI	RGCY	6 cut(s)	34, 171, 185, 213, 263, 542
CviKI_1	RGCY	6 cut(s)	34, 171, 185, 213, 263, 542
CviQI	GTAC	6 cut(s)	141, 219, 231, 397, 403, 593
DdeI	CTNAG	3 cut(s)	24, 35, 596
DpnI	GATC	3 cut(s)	116, 444, 500
DpnII	GATC	3 cut(s)	114, 442, 498
Ecl136II	GAGCTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	215
Eco32I	GATATC	2 cut(s)	85, 484
Eco47I	GGWCC	3 cut(s)	301, 311, 416
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	628
EcoRV	GATATC	2 cut(s)	85, 484
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	5 cut(s)	82, 210, 273, 308, 440
FaiI	YATR	8 cut(s)	80, 208, 271, 306, 348, 438, 461, 588
FatI	CATG	5 cut(s)	78, 206, 269, 304, 436
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	32, 55, 160, 180, 183, 323, 374, 387
FokI	GGATG	4 cut(s)	83, 342, 352, 395
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	8 cut(s)	32, 55, 160, 180, 183, 323, 374, 387
FspBI	CTAG	3 cut(s)	225, 275, 634
GluI	GCNGC	8 cut(s)	32, 55, 160, 180, 183, 323, 374, 387
GsuI	CTGGAG	3 cut(s)	199, 267, 398
HaeIII	GGCC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	82, 210, 273, 308, 440
HinfI	GANTC	2 cut(s)	5, 109
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	3 cut(s)	114, 420, 525
Hpy188III	TCNNGA	2 cut(s)	88, 367
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	3 cut(s)	16, 50, 53
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	301, 416, 578
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	138, 243, 386, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	3 cut(s)	24, 35, 596
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	82, 210, 273, 308, 440
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 442, 498
LmnI	GCTCC	5 cut(s)	198, 210, 218, 286, 511
LpnPI	CCDG	8 cut(s)	148, 219, 229, 297, 362, 523, 552, 574
Lsp1109I	GCAGC	6 cut(s)	171, 191, 194, 334, 360, 398
LweI	GCATC	3 cut(s)	125, 360, 373
MaeI	CTAG	3 cut(s)	225, 275, 634
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	410, 563, 572, 628
MalI	GATC	3 cut(s)	116, 444, 500
MboI	GATC	3 cut(s)	114, 442, 498
MboII	GAAGA	5 cut(s)	53, 118, 262, 265, 523
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	215, 508
MluCI	AATT	2 cut(s)	514, 553
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	289, 626
MnlI	CCTC	5 cut(s)	61, 330, 373, 484, 563
MseI	TTAA	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	3 cut(s)	114, 442, 498
NlaIII	CATG	5 cut(s)	82, 210, 273, 308, 440
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	8 cut(s)	33, 56, 161, 181, 184, 324, 375, 388
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	3 cut(s)	301, 311, 416
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	6 cut(s)	142, 220, 232, 398, 404, 594
RsaNI	GTAC	6 cut(s)	141, 219, 231, 397, 403, 593
Rsr2I	CGGWCCG	1 cut(s)	416
RsrII	CGGWCCG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	8 cut(s)	32, 55, 160, 180, 183, 323, 374, 387
Sau3AI	GATC	3 cut(s)	114, 442, 498
Sau96I	GGNCC	3 cut(s)	301, 311, 416
ScaI	AGTACT	3 cut(s)	142, 220, 232
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	215, 508
SetI	ASST	6 cut(s)	51, 187, 215, 544, 574, 635
SfaNI	GCATC	3 cut(s)	125, 360, 373
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	301, 311, 416
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	514, 553
SsiI	CCGC	2 cut(s)	31, 54
SspMI	CTAG	3 cut(s)	225, 275, 634
SstI	GAGCTC	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	301, 416, 578
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	486
TasI	AATT	2 cut(s)	514, 553
TatI	WGTACW	3 cut(s)	140, 218, 230
TauI	GCSGC	2 cut(s)	34, 57
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	64, 508, 583
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	6 cut(s)	159, 179, 182, 322, 373, 386
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	64, 508, 583
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	301, 311, 416
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	3 cut(s)	225, 275, 634
ZraI	GACGTC	1 cut(s)	49
ZrmI	AGTACT	3 cut(s)	142, 220, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.