Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

46956134 .. 46956638

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATATCGTGAAGGGAAGGTGGACGAAGAATCCGATCATCAAGGCGTGGAAGCGATGCAGTACTTTACCCAAACAAAGCAGCACGAAAGGCTCTACAGCAGCTGCTTTATTGACAAGAAGCAAATCATGGAGCTCCAGTACTACTAGTAGTACTGGCACTTGCAAGCAGAAGAAGAACAAGGCCAAGGCATGCCAAGTCGCTCCGGCTGGGTGTTTCACAGTCTACGTTGGACCTGAAAAGCAGCGATTTGTGGTGAAGATGGAGTTTCTTAATCATCCATTGTTCAAGATGCTGTTGGAGGATGCAGCACTGGAGTATGGGTACAAAAGTGACGGTCCGATATTGCTTGCTTGCCATGTGGATCTGTTCTGCAATGTTATGGCAGAGATGGAGAGCAATGATATCGACGAGGATAGGATCAGTGCTCCCCTCCGGCTCGTCGTAGAAATTGTGCTAGCATTACGGTGGTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

160

Amino Acids

17.7

Weight (kDa)

9.21

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 129	1.2e-23	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	372, 428
AfaI	GTAC	4 cut(s)	64, 142, 154, 326
AgsI	TTSAA	1 cut(s)	289
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	104, 135
AluI	AGCT	2 cut(s)	104, 135
Alw21I	GWGCWC	2 cut(s)	137, 430
AlwI	GGATC	2 cut(s)	372, 428
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	81, 101, 104, 244, 308
AspS9I	GGNCC	2 cut(s)	233, 338
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	233, 338
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	137, 430
BbvI	GCAGC	5 cut(s)	91, 93, 113, 256, 320
BccI	CCATC	2 cut(s)	256, 385
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 458
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
BlsI	GCNGC	5 cut(s)	83, 103, 106, 246, 310
BmcAI	AGTACT	3 cut(s)	64, 142, 154
Bme18I	GGWCC	2 cut(s)	233, 338
BmgT120I	GGNCC	2 cut(s)	233, 338
BmsI	GCATC	3 cut(s)	47, 282, 295
BmtI	GCTAGC	1 cut(s)	461
BpmI	CTGGAG	2 cut(s)	121, 335
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 308, 338
Bse1I	ACTGG	3 cut(s)	138, 160, 318
Bse3DI	GCAATG	2 cut(s)	382, 406
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	277, 310
BseMI	GCAATG	2 cut(s)	382, 406
BseNI	ACTGG	3 cut(s)	138, 160, 318
BseXI	GCAGC	5 cut(s)	91, 93, 113, 256, 320
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	137, 430
BsiSI	CCGG	2 cut(s)	206, 436
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	137, 430
Bsp143I	GATC	3 cut(s)	36, 364, 420
BspANI	GGCC	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	372, 428
BsrDI	GCAATG	2 cut(s)	382, 406
BsrI	ACTGG	3 cut(s)	138, 160, 318
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	36, 364, 420
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	223, 338, 468
BstC8I	GCNNGC	5 cut(s)	167, 193, 351, 355, 459
BstF5I	GGATG	2 cut(s)	277, 310
BstKTI	GATC	3 cut(s)	39, 367, 423
BstMBI	GATC	3 cut(s)	36, 364, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	5 cut(s)	91, 93, 113, 256, 320
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	277, 310
BtsIMutI	CAGTG	2 cut(s)	311, 430
Cac8I	GCNNGC	5 cut(s)	167, 193, 351, 355, 459
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	233, 338
CpoI	CGGWCCG	1 cut(s)	338
Csp6I	GTAC	4 cut(s)	63, 141, 153, 325
CspI	CGGWCCG	1 cut(s)	338
CviAII	CATG	3 cut(s)	129, 192, 359
CviJI	RGCY	6 cut(s)	93, 104, 135, 185, 209, 439
CviKI_1	RGCY	6 cut(s)	93, 104, 135, 185, 209, 439
CviQI	GTAC	4 cut(s)	63, 141, 153, 325
DpnI	GATC	3 cut(s)	38, 366, 422
DpnII	GATC	3 cut(s)	36, 364, 420
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	2 cut(s)	7, 406
Eco47I	GGWCC	2 cut(s)	233, 338
Eco53kI	GAGCTC	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	135
EcoRV	GATATC	2 cut(s)	7, 406
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	132, 195, 362
FaiI	YATR	6 cut(s)	130, 193, 321, 360, 383, 478
FatI	CATG	3 cut(s)	128, 191, 358
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
FokI	GGATG	2 cut(s)	264, 317
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
FspBI	CTAG	2 cut(s)	147, 458
GluI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	121, 335
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	206, 436
Hin1II	CATG	3 cut(s)	132, 195, 362
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	206, 436
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	24, 226
Hpy188I	TCNGA	2 cut(s)	36, 342
Hpy188III	TCNNGA	2 cut(s)	10, 289
Hpy8I	GTNNAC	2 cut(s)	24, 226
Hpy99I	CGWCG	2 cut(s)	413, 446
HpyAV	CCTTC	2 cut(s)	7, 12
HpyCH4III	ACNGT	3 cut(s)	223, 338, 468
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	60, 165, 308, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	132, 195, 362
Kzo9I	GATC	3 cut(s)	36, 364, 420
LmnI	GCTCC	4 cut(s)	132, 140, 208, 433
LpnPI	CCDG	7 cut(s)	141, 151, 195, 219, 249, 299, 449
Lsp1109I	GCAGC	5 cut(s)	91, 93, 113, 256, 320
LweI	GCATC	3 cut(s)	47, 282, 295
MaeI	CTAG	2 cut(s)	147, 458
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	38, 366, 422
MboI	GATC	3 cut(s)	36, 364, 420
MboII	GAAGA	4 cut(s)	40, 184, 187, 271
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	137, 430
MluCI	AATT	1 cut(s)	450
MmeI	TCCRAC	2 cut(s)	211, 279
MnlI	CCTC	3 cut(s)	295, 406, 443
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	2 cut(s)	206, 436
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	3 cut(s)	36, 364, 420
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	132, 195, 362
NmuCI	GTSAC	1 cut(s)	332
NspI	RCATGY	1 cut(s)	195
PaeI	GCATGC	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	83, 103, 106, 246, 310
Psp124BI	GAGCTC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	233, 338
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	4 cut(s)	64, 142, 154, 326
RsaNI	GTAC	4 cut(s)	63, 141, 153, 325
RseI	CAYNNNNRTG	1 cut(s)	466
Rsr2I	CGGWCCG	1 cut(s)	338
RsrII	CGGWCCG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	82, 102, 105, 245, 309
Sau3AI	GATC	3 cut(s)	36, 364, 420
Sau96I	GGNCC	2 cut(s)	233, 338
ScaI	AGTACT	3 cut(s)	64, 142, 154
SduI	GDGCHC	2 cut(s)	137, 430
SetI	ASST	5 cut(s)	23, 106, 137, 231, 238
SfaNI	GCATC	3 cut(s)	47, 282, 295
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	233, 338
SmiMI	CAYNNNNRTG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	1 cut(s)	450
SspMI	CTAG	2 cut(s)	147, 458
SstI	GAGCTC	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	223, 338, 468
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	450
TatI	WGTACW	3 cut(s)	62, 140, 152
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	318, 430
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	5 cut(s)	81, 101, 104, 244, 308
Tsp45I	GTSAC	1 cut(s)	332
TspRI	CASTG	2 cut(s)	318, 430
VpaK11BI	GGWCC	2 cut(s)	233, 338
XceI	RCATGY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	147, 458
ZrmI	AGTACT	3 cut(s)	64, 142, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.