Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

5034118 .. 5034576

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATATTGTGAAGGGAAAGTTGGCGAAGAATGTGATAATGAAGGCATGGAGGAAGTGCAATTTAACAAACCAGAGCAGCAGCAAGAGGAAGAAGAGCAAGGGCTGCAGAGTACTAGCTCCGGATGGGTGCTTCTCGGTCTACGTTGGACCAGAGAAGCAACGATTCGTGGTGAAGGTTGAGTTTGCTAACCATCCATTGTTCAAGGTACTGTTAGAGGATGCTGCCTGGGAATACGGGTACAGTACTGGAGGTCCAATTTTGCTTCCTTGCGATGTGGATTTGTTCTGCAATGTTTTGGCAGAGATGGAGAACAATGTTGATGGCGATATGATGAGTTTATCCGACGAGTTTTTTTTCATACAATGTAGCAGTCCAGCTCGTCGTCCTCGTTCAGATTCGAGCATGATTAAGGGCTATGATGGTGCTTATATGCTGCTTAGTCCATCAGTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

8.51

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	15 - 101	1e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	121
AfaI	GTAC	4 cut(s)	114, 210, 242, 247
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	119, 380
AluI	AGCT	2 cut(s)	119, 380
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	5 cut(s)	78, 81, 105, 224, 436
AspS9I	GGNCC	2 cut(s)	149, 254
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	149, 254
BbvI	GCAGC	5 cut(s)	90, 92, 93, 211, 423
BccI	CCATC	6 cut(s)	119, 201, 301, 317, 416, 454
BciT130I	CCWGG	1 cut(s)	229
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	5 cut(s)	79, 82, 106, 225, 437
BlsI	GCNGC	5 cut(s)	80, 83, 107, 226, 438
BmcAI	AGTACT	2 cut(s)	114, 247
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	2 cut(s)	149, 254
BmgT120I	GGNCC	2 cut(s)	149, 254
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	130, 193, 226
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	90, 92, 93, 211, 423
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	452
Bsp13I	TCCGGA	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	213, 245
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	3 cut(s)	130, 193, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	5 cut(s)	90, 92, 93, 211, 423
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	130, 193, 226
Cfr13I	GGNCC	2 cut(s)	149, 254
Csp6I	GTAC	4 cut(s)	113, 209, 241, 246
CviAII	CATG	2 cut(s)	48, 406
CviJI	RGCY	4 cut(s)	105, 119, 380, 417
CviKI_1	RGCY	4 cut(s)	105, 119, 380, 417
CviQI	GTAC	4 cut(s)	113, 209, 241, 246
DdeI	CTNAG	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	149, 254
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	51, 409
FaiI	YATR	7 cut(s)	49, 332, 362, 407, 420, 432, 434
FatI	CATG	2 cut(s)	47, 405
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	79, 82, 106, 225, 437
FokI	GGATG	3 cut(s)	137, 180, 233
Fsp4HI	GCNGC	5 cut(s)	79, 82, 106, 225, 437
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	5 cut(s)	79, 82, 106, 225, 437
GsuI	CTGGAG	1 cut(s)	270
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	51, 409
HinfI	GANTC	2 cut(s)	165, 398
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	346, 397
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	2 cut(s)	350, 387
HpyAV	CCTTC	3 cut(s)	7, 37, 169
HpyCH4III	ACNGT	2 cut(s)	213, 245
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	60, 108, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	51, 409
Kpn2I	TCCGGA	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	7 cut(s)	86, 135, 165, 214, 234, 241, 390
Lsp1109I	GCAGC	5 cut(s)	90, 92, 93, 211, 423
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	144
MboII	GAAGA	3 cut(s)	40, 103, 106
MluCI	AATT	2 cut(s)	61, 258
MmeI	TCCRAC	2 cut(s)	127, 369
MnlI	CCTC	5 cut(s)	45, 81, 211, 245, 399
MroI	TCCGGA	1 cut(s)	121
MseI	TTAA	3 cut(s)	65, 411, 457
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	51, 409
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	165, 398
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	80, 83, 107, 226, 438
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	149, 254
PstI	CTGCAG	1 cut(s)	110
RsaI	GTAC	4 cut(s)	114, 210, 242, 247
RsaNI	GTAC	4 cut(s)	113, 209, 241, 246
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	65, 411, 457
SatI	GCNGC	5 cut(s)	79, 82, 106, 225, 437
Sau96I	GGNCC	2 cut(s)	149, 254
ScaI	AGTACT	2 cut(s)	114, 247
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	6 cut(s)	121, 147, 180, 210, 256, 382
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	149, 254
Sse9I	AATT	2 cut(s)	61, 258
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	213, 245
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	401
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	61, 258
TatI	WGTACW	2 cut(s)	112, 245
TfiI	GAWTC	2 cut(s)	165, 398
Tru1I	TTAA	3 cut(s)	65, 411, 457
Tru9I	TTAA	3 cut(s)	65, 411, 457
TseI	GCWGC	5 cut(s)	78, 81, 105, 224, 436
TspDTI	ATGAA	2 cut(s)	56, 349
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	149, 254
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	2 cut(s)	114, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.