Rh7BG105800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000824
Physical Location & Seq
Forward (+)
7961651 .. 7962261
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG105800.1

Sequence Viewer

Length: 459 bp
ATGGAAATGGTGAAGGCAGAGTCGACAAAGAATCTGATTATCAAGGCGTGGAGGCTATGCACTACTTTACATAAACAAACCAGCATCAAAAGGTGCACAGCACCCAGTTCAGCAAGGAGTTGCAGTACTAGCAATGGCAAGCGGAAGAAGAACAAGGCCGACGAAGTAACTCCTGTTGGGTGTTTCTCTGTCTACATCGGACCCGAAAAACAACGGTTTGTGGTGAAGGTGGAGTTTGCTAATCATCCGTTGTTCAAGGTGCTGTTAGAGGATGCAGCATTGGAGTATGGGTACAAAAATGATGGTCCACTGTTGCTTCCTTGTGATGTGGATTTGTTCTACAATGTTTTGGCAGAGATGGAGAGCATGGATAACATCAATGAGGAAATCATAAAGTTCCAACCGGTCTTTGATACAAATTTTCTTCAGTCCAACTCGCAGTCATCATTCAGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

152

Amino Acids

17.28

Weight (kDa)

8.25

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 34 - 118 1.2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 23, 192
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 2 cut(s) 127, 293
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 256
Alw21I GWGCWC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 94
AoxI GGCC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 418
AsiGI ACCGGT 1 cut(s) 403
AspS9I GGNCC 2 cut(s) 200, 305
AsuHPI GGTGA 2 cut(s) 22, 235
AvaII GGWCC 2 cut(s) 200, 305
BaeGI GKGCMC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 296, 352
BfaI CTAG 2 cut(s) 129, 457
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmcAI AGTACT 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 200, 305
BmgT120I GGNCC 2 cut(s) 200, 305
BmiI GGNNCC 1 cut(s) 202
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 93, 262
BmuI ACTGGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 275, 305
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 139
BseGI GGATG 2 cut(s) 244, 277
BseMI GCAATG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 404
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 98
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 216, 312
BstC8I GCNNGC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 244, 277
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 2 cut(s) 244, 277
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 200, 305
Csp6I GTAC 2 cut(s) 126, 292
CspAI ACCGGT 1 cut(s) 403
CviAII CATG 1 cut(s) 367
CviJI RGCY 2 cut(s) 55, 158
CviKI_1 RGCY 2 cut(s) 55, 158
CviQI GTAC 2 cut(s) 126, 292
Eco47I GGWCC 2 cut(s) 200, 305
Eco57I CTGAAG 1 cut(s) 410
FaeI CATG 1 cut(s) 370
FaiI YATR 5 cut(s) 58, 72, 288, 368, 392
FatI CATG 1 cut(s) 366
FblI GTMKAC 2 cut(s) 23, 192
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 231, 284
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 129, 457
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 404
Hin1II CATG 1 cut(s) 370
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 3 cut(s) 20, 31, 453
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 22, 235
Hpy166II GTNNAC 4 cut(s) 24, 96, 193, 308
Hpy188I TCNGA 3 cut(s) 36, 200, 452
Hpy8I GTNNAC 4 cut(s) 24, 96, 193, 308
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 7, 220
HpyCH4III ACNGT 2 cut(s) 216, 312
HpyCH4V TGCA 4 cut(s) 60, 96, 123, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 370
LpnPI CCDG 4 cut(s) 94, 118, 186, 417
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 93, 262
MaeI CTAG 2 cut(s) 129, 457
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 3 cut(s) 157, 160, 416
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 418
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 424, 456
MnlI CCTC 3 cut(s) 45, 262, 376
MspI CCGG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 129
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 31, 453
PinAI ACCGGT 1 cut(s) 403
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 200, 305
RsaI GTAC 2 cut(s) 127, 293
RsaNI GTAC 2 cut(s) 126, 292
SalI GTCGAC 1 cut(s) 22
SatI GCNGC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 200, 305
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 98
SetI ASST 3 cut(s) 95, 231, 261
SfaNI GCATC 2 cut(s) 93, 262
SinI GGWCC 2 cut(s) 200, 305
Sse9I AATT 1 cut(s) 418
SsiI CCGC 1 cut(s) 142
SspMI CTAG 2 cut(s) 129, 457
TaaI ACNGT 2 cut(s) 216, 312
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 418
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 2 cut(s) 31, 453
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 200, 305
XapI RAATTY 1 cut(s) 418
XmiI GTMKAC 2 cut(s) 23, 192
XspI CTAG 2 cut(s) 129, 457
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.